Wall clock time and date at job start Sun Mar 29 2020 21:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08994 * 109.48439 * 54.97466 * 3 2 1 5 5 C 1.53094 * 109.47749 * 174.99917 * 3 2 1 6 6 C 1.53179 * 109.16213 * 62.37283 * 5 3 2 7 7 H 1.08994 * 109.54544 * 297.01979 * 6 5 3 8 8 N 1.46901 * 109.54327 * 176.84501 * 6 5 3 9 9 C 1.46900 * 110.99971 * 56.04326 * 8 6 5 10 10 C 1.46898 * 111.00274 * 179.97438 * 8 6 5 11 11 C 1.50696 * 109.47597 * 169.99878 * 10 8 6 12 12 H 1.08012 * 119.99823 * 0.02562 * 11 10 8 13 13 C 1.37875 * 120.00609 * 179.97438 * 11 10 8 14 14 N 1.31513 * 120.00270 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99760 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.46904 * 89.99632 * 15 13 11 17 17 H 1.48493 * 109.47194 * 209.99933 * 15 13 11 18 18 H 1.48501 * 109.46847 * 330.00049 * 15 13 11 19 19 C 1.53184 * 109.03740 * 56.98209 * 6 5 3 20 20 C 1.53091 * 109.15970 * 303.01615 * 19 6 5 21 21 O 1.42901 * 109.48067 * 294.93712 * 3 2 1 22 22 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 23 23 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 24 24 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 26 26 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 27 27 H 1.09000 * 109.51989 * 182.27679 * 5 3 2 28 28 H 1.08992 * 109.52533 * 302.40158 * 5 3 2 29 29 H 1.09001 * 109.47031 * 60.00445 * 9 8 6 30 30 H 1.09004 * 109.47229 * 179.97438 * 9 8 6 31 31 H 1.08996 * 109.47114 * 300.00410 * 9 8 6 32 32 H 1.08995 * 109.47183 * 290.00093 * 10 8 6 33 33 H 1.09006 * 109.46860 * 50.00252 * 10 8 6 34 34 H 0.97004 * 120.00007 * 180.02562 * 14 13 11 35 35 H 1.08995 * 109.52196 * 62.92593 * 19 6 5 36 36 H 1.08999 * 109.51884 * 183.05112 * 19 6 5 37 37 H 1.08998 * 109.48222 * 177.59159 * 20 19 6 38 38 H 1.08997 * 109.48163 * 297.62407 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9818 0.8414 5 6 3.5657 1.4445 0.1258 6 6 4.1715 0.7373 -1.0904 7 1 3.8517 -0.3046 -1.1030 8 7 5.6372 0.8005 -1.0161 9 6 6.1254 0.2298 0.2464 10 6 6.2523 0.1298 -2.1692 11 6 7.7303 0.4228 -2.1914 12 1 8.1691 1.0448 -1.4250 13 6 8.5228 -0.1039 -3.1891 14 7 9.8128 0.1514 -3.2080 15 14 7.7642 -1.1803 -4.5140 16 1 7.3270 -0.3312 -5.6513 17 1 8.7701 -2.1640 -4.9887 18 1 6.5922 -1.9010 -3.9553 19 6 3.6924 1.4378 -2.3657 20 6 2.1618 1.4360 -2.3952 21 8 1.6633 2.0811 -1.2216 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3635 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.9264 2.4723 0.1666 28 1 3.8569 0.9200 1.0358 29 1 5.8167 -0.8132 0.3170 30 1 7.2135 0.2888 0.2751 31 1 5.7085 0.7896 1.0835 32 1 6.0963 -0.9460 -2.0895 33 1 5.7955 0.4961 -3.0887 34 1 10.3702 -0.2189 -3.9103 35 1 4.0557 2.4654 -2.3752 36 1 4.0751 0.9080 -3.2380 37 1 1.8146 1.9708 -3.2793 38 1 1.8000 0.4083 -2.4266 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170204825.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:53 Heat of formation + Delta-G solvation = -50.098389 kcal Electronic energy + Delta-G solvation = -16833.452532 eV Core-core repulsion = 14289.710896 eV Total energy + Delta-G solvation = -2543.741636 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.91610 -36.66431 -33.46391 -32.73919 -31.38951 -30.21498 -27.80000 -25.69442 -24.05094 -22.75558 -22.11689 -20.30303 -18.83525 -17.10491 -16.26102 -15.86841 -15.23618 -14.70073 -14.31860 -13.98425 -13.64675 -13.57232 -13.07427 -12.85445 -12.65063 -12.32958 -12.10519 -11.82784 -11.46857 -11.28935 -11.00701 -10.92565 -10.85231 -10.69947 -10.46414 -10.00734 -9.91825 -9.73841 -9.28866 -9.24668 -8.56717 -7.35994 -6.05839 -4.02683 3.26355 3.34016 3.35358 3.95317 4.40637 4.65406 4.74448 4.97666 5.00039 5.11526 5.24443 5.27806 5.39838 5.47839 5.54947 5.64225 5.72554 5.78927 5.84019 5.88772 6.03777 6.10693 6.12774 6.21811 6.24706 6.31573 6.44126 6.61973 6.71961 6.87607 6.98927 7.34616 7.60303 7.91248 8.06364 8.66165 9.02948 9.56038 11.07386 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.039392 B = 0.006956 C = 0.006536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.626641 B = 4024.198900 C = 4283.047686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.160 4.160 3 C 0.093 3.907 4 H 0.099 0.901 5 C -0.142 4.142 6 C 0.083 3.917 7 H 0.030 0.970 8 N -0.526 5.526 9 C 0.035 3.965 10 C 0.159 3.841 11 C -0.508 4.508 12 H 0.081 0.919 13 C 0.068 3.932 14 N -0.901 5.901 15 Si 0.873 3.127 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.269 1.269 19 C -0.150 4.150 20 C 0.060 3.940 21 O -0.377 6.377 22 H 0.052 0.948 23 H 0.058 0.942 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.009 0.991 30 H 0.080 0.920 31 H 0.051 0.949 32 H -0.014 1.014 33 H 0.028 0.972 34 H 0.263 0.737 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.893 -0.299 5.134 17.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.198 4.198 3 C 0.035 3.965 4 H 0.116 0.884 5 C -0.180 4.180 6 C -0.026 4.026 7 H 0.048 0.952 8 N -0.250 5.250 9 C -0.114 4.114 10 C 0.032 3.968 11 C -0.546 4.546 12 H 0.099 0.901 13 C -0.133 4.133 14 N -0.540 5.540 15 Si 0.700 3.300 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.194 1.194 19 C -0.188 4.188 20 C -0.018 4.018 21 O -0.295 6.295 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.027 0.973 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.003 0.997 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -16.684 0.317 5.009 17.423 hybrid contribution -0.190 -1.792 -0.792 1.969 sum -16.874 -1.476 4.217 17.456 Atomic orbital electron populations 1.21695 0.95404 1.01150 1.02134 1.22215 0.96660 0.97879 1.03018 1.22218 0.94059 0.92765 0.87486 0.88357 1.22303 0.94593 1.02600 0.98547 1.21597 0.90059 0.96502 0.94458 0.95174 1.61995 1.02660 1.56909 1.03460 1.22276 1.02337 0.95408 0.91349 1.20238 0.96147 0.91342 0.89029 1.21044 0.89974 1.31153 1.12437 0.90142 1.24893 0.94725 0.96129 0.97573 1.69893 1.04527 1.45474 1.34083 0.86897 0.79356 0.81029 0.82709 1.20091 1.21162 1.19364 1.22293 0.95037 1.02995 0.98426 1.22605 0.93622 0.97487 0.88037 1.87931 1.74631 1.53291 1.13684 0.92867 0.92255 0.93122 0.91125 0.91174 0.90213 0.91106 0.97258 0.90168 0.93062 0.99679 0.95415 0.92677 0.90060 0.90681 0.89090 0.93332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.81 37.16 0.36 -1.07 16 2 C -0.16 -1.80 4.74 -26.73 -0.13 -1.93 16 3 C 0.09 1.16 3.29 -26.68 -0.09 1.07 16 4 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 5 C -0.14 -2.05 4.45 -26.59 -0.12 -2.17 16 6 C 0.08 1.42 1.72 -67.52 -0.12 1.31 16 7 H 0.03 0.53 6.74 -51.93 -0.35 0.18 16 8 N -0.53 -11.09 4.62 -236.11 -1.09 -12.18 16 9 C 0.03 0.67 8.93 60.06 0.54 1.21 16 10 C 0.16 3.87 3.61 -4.98 -0.02 3.85 16 11 C -0.51 -14.51 9.01 -34.44 -0.31 -14.82 16 12 H 0.08 2.50 7.37 -52.48 -0.39 2.12 16 13 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 14 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 15 Si 0.87 21.54 27.47 -169.99 -4.67 16.87 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 19 C -0.15 -2.44 5.13 -26.59 -0.14 -2.57 16 20 C 0.06 0.80 6.52 37.20 0.24 1.04 16 21 O -0.38 -5.28 10.13 -35.23 -0.36 -5.64 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.62 7.82 -51.93 -0.41 0.21 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.87 4.98 -51.93 -0.26 0.61 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.07 0.95 6.55 -51.93 -0.34 0.61 16 29 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.08 1.73 6.76 -51.93 -0.35 1.37 16 31 H 0.05 0.84 6.31 -51.93 -0.33 0.51 16 32 H -0.01 -0.36 7.18 -51.93 -0.37 -0.73 16 33 H 0.03 0.67 5.35 -51.93 -0.28 0.40 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.07 1.29 6.39 -51.93 -0.33 0.95 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.05 0.61 6.23 -51.93 -0.32 0.29 16 LS Contribution 284.73 15.07 4.29 4.29 Total: -1.00 -30.45 284.73 -7.20 -37.65 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -6.28 Total: -1.87 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 0.13 Total: -12.20 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: -0.32 Total: -39.10 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.36 Total: -5.64 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.45 -7.20 -37.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170204825.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.449 kcal (2) G-P(sol) polarization free energy of solvation -30.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds