Wall clock time and date at job start Sun Mar 29 2020 21:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08994 * 109.48439 * 54.97466 * 3 2 1 5 5 C 1.53094 * 109.47749 * 174.99917 * 3 2 1 6 6 C 1.53179 * 109.16213 * 62.37283 * 5 3 2 7 7 H 1.08994 * 109.54544 * 297.01979 * 6 5 3 8 8 N 1.46901 * 109.54327 * 176.84501 * 6 5 3 9 9 C 1.46900 * 110.99971 * 56.04326 * 8 6 5 10 10 C 1.46898 * 111.00274 * 179.97438 * 8 6 5 11 11 C 1.50696 * 109.47597 * 169.99878 * 10 8 6 12 12 H 1.08012 * 119.99823 * 0.02562 * 11 10 8 13 13 C 1.37875 * 120.00609 * 179.97438 * 11 10 8 14 14 N 1.31513 * 120.00270 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99760 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.46904 * 89.99632 * 15 13 11 17 17 H 1.48493 * 109.47194 * 209.99933 * 15 13 11 18 18 H 1.48501 * 109.46847 * 330.00049 * 15 13 11 19 19 C 1.53184 * 109.03740 * 56.98209 * 6 5 3 20 20 C 1.53091 * 109.15970 * 303.01615 * 19 6 5 21 21 O 1.42901 * 109.48067 * 294.93712 * 3 2 1 22 22 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 23 23 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 24 24 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 26 26 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 27 27 H 1.09000 * 109.51989 * 182.27679 * 5 3 2 28 28 H 1.08992 * 109.52533 * 302.40158 * 5 3 2 29 29 H 1.09001 * 109.47031 * 60.00445 * 9 8 6 30 30 H 1.09004 * 109.47229 * 179.97438 * 9 8 6 31 31 H 1.08996 * 109.47114 * 300.00410 * 9 8 6 32 32 H 1.08995 * 109.47183 * 290.00093 * 10 8 6 33 33 H 1.09006 * 109.46860 * 50.00252 * 10 8 6 34 34 H 0.97004 * 120.00007 * 180.02562 * 14 13 11 35 35 H 1.08995 * 109.52196 * 62.92593 * 19 6 5 36 36 H 1.08999 * 109.51884 * 183.05112 * 19 6 5 37 37 H 1.08998 * 109.48222 * 177.59159 * 20 19 6 38 38 H 1.08997 * 109.48163 * 297.62407 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9818 0.8414 5 6 3.5657 1.4445 0.1258 6 6 4.1715 0.7373 -1.0904 7 1 3.8517 -0.3046 -1.1030 8 7 5.6372 0.8005 -1.0161 9 6 6.1254 0.2298 0.2464 10 6 6.2523 0.1298 -2.1692 11 6 7.7303 0.4228 -2.1914 12 1 8.1691 1.0448 -1.4250 13 6 8.5228 -0.1039 -3.1891 14 7 9.8128 0.1514 -3.2080 15 14 7.7642 -1.1803 -4.5140 16 1 7.3270 -0.3312 -5.6513 17 1 8.7701 -2.1640 -4.9887 18 1 6.5922 -1.9010 -3.9553 19 6 3.6924 1.4378 -2.3657 20 6 2.1618 1.4360 -2.3952 21 8 1.6633 2.0811 -1.2216 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3635 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.9264 2.4723 0.1666 28 1 3.8569 0.9200 1.0358 29 1 5.8167 -0.8132 0.3170 30 1 7.2135 0.2888 0.2751 31 1 5.7085 0.7896 1.0835 32 1 6.0963 -0.9460 -2.0895 33 1 5.7955 0.4961 -3.0887 34 1 10.3702 -0.2189 -3.9103 35 1 4.0557 2.4654 -2.3752 36 1 4.0751 0.9080 -3.2380 37 1 1.8146 1.9708 -3.2793 38 1 1.8000 0.4083 -2.4266 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170204825.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:53 Heat of formation + Delta-G solvation = -71.173483 kcal Electronic energy + Delta-G solvation = -16834.366417 eV Core-core repulsion = 14289.710896 eV Total energy + Delta-G solvation = -2544.655521 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.07590 -38.17390 -34.84435 -34.35935 -32.89664 -31.36081 -29.62692 -27.18812 -25.29609 -23.98578 -23.48662 -21.91512 -20.01747 -19.08837 -17.55855 -17.03634 -16.61636 -16.38845 -15.70618 -15.50041 -14.98169 -14.75931 -14.50301 -14.44198 -14.05769 -13.70154 -13.30927 -13.17686 -12.86281 -12.75721 -12.53083 -12.27767 -12.19565 -11.93302 -11.90422 -11.74967 -11.48180 -11.24117 -10.96223 -10.77385 -10.37764 -9.02697 -8.30148 -6.33226 1.31799 1.33207 1.43662 2.31981 2.92129 3.03067 3.19174 3.72967 3.84153 4.00866 4.07962 4.19592 4.26225 4.35739 4.44308 4.48335 4.60271 4.67890 4.74227 4.77373 4.86739 4.88903 4.91906 5.01305 5.05138 5.13312 5.15759 5.21964 5.32242 5.37093 5.44358 5.54788 5.98408 6.30785 6.37319 6.65452 6.73012 7.30193 8.86589 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.039392 B = 0.006956 C = 0.006536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.626641 B = 4024.198900 C = 4283.047686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.158 4.158 3 C 0.094 3.906 4 H 0.118 0.882 5 C -0.136 4.136 6 C 0.081 3.919 7 H 0.035 0.965 8 N -0.545 5.545 9 C 0.039 3.961 10 C 0.170 3.830 11 C -0.517 4.517 12 H 0.037 0.963 13 C 0.008 3.992 14 N -0.948 5.948 15 Si 0.945 3.055 16 H -0.263 1.263 17 H -0.280 1.280 18 H -0.253 1.253 19 C -0.150 4.150 20 C 0.066 3.934 21 O -0.386 6.386 22 H 0.062 0.938 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.018 0.982 30 H 0.046 0.954 31 H 0.082 0.918 32 H -0.018 1.018 33 H 0.033 0.967 34 H 0.267 0.733 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.108 0.892 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.654 -1.198 5.045 20.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.195 4.195 3 C 0.036 3.964 4 H 0.136 0.864 5 C -0.174 4.174 6 C -0.027 4.027 7 H 0.053 0.947 8 N -0.269 5.269 9 C -0.109 4.109 10 C 0.043 3.957 11 C -0.555 4.555 12 H 0.055 0.945 13 C -0.189 4.189 14 N -0.589 5.589 15 Si 0.768 3.232 16 H -0.188 1.188 17 H -0.206 1.206 18 H -0.177 1.177 19 C -0.188 4.188 20 C -0.011 4.011 21 O -0.305 6.305 22 H 0.081 0.919 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.036 0.964 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.000 1.000 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.126 0.874 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.468 -0.572 4.940 20.093 hybrid contribution 0.712 -1.439 -0.664 1.738 sum -18.756 -2.012 4.275 19.342 Atomic orbital electron populations 1.21665 0.94163 1.01870 1.02325 1.22190 0.97707 0.96692 1.02936 1.22339 0.92454 0.93996 0.87591 0.86407 1.22272 0.96086 1.01465 0.97616 1.21728 0.87350 0.97284 0.96366 0.94729 1.61913 1.05308 1.56817 1.02886 1.22224 1.00424 0.96474 0.91783 1.19970 0.93604 0.91237 0.90855 1.21278 0.92506 1.30349 1.11365 0.94484 1.25835 0.95065 0.97710 1.00281 1.70049 1.06293 1.47125 1.35396 0.85754 0.78905 0.79130 0.79429 1.18775 1.20583 1.17660 1.22293 0.97405 1.01534 0.97568 1.22602 0.91188 0.98616 0.88660 1.87930 1.74460 1.53881 1.14191 0.91852 0.92899 0.92184 0.92245 0.90229 0.91539 0.89903 0.96385 0.93481 0.89960 1.00009 0.94873 0.92407 0.91809 0.91748 0.87388 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.81 71.98 0.71 -1.62 16 2 C -0.16 -3.04 4.74 30.59 0.15 -2.90 16 3 C 0.09 2.07 3.29 30.63 0.10 2.18 16 4 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 5 C -0.14 -3.64 4.45 30.69 0.14 -3.50 16 6 C 0.08 2.66 1.72 45.04 0.08 2.74 16 7 H 0.03 1.13 6.74 -2.39 -0.02 1.11 16 8 N -0.55 -22.87 4.62 -900.91 -4.17 -27.04 16 9 C 0.04 1.50 8.93 127.69 1.14 2.64 16 10 C 0.17 8.30 3.61 85.56 0.31 8.61 16 11 C -0.52 -30.40 9.01 25.60 0.23 -30.17 16 12 H 0.04 2.43 7.37 -2.90 -0.02 2.41 16 13 C 0.01 0.49 5.47 84.65 0.46 0.95 16 14 N -0.95 -59.86 13.96 21.45 0.30 -59.56 16 15 Si 0.94 44.30 27.47 68.60 1.88 46.19 16 16 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 17 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 18 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 19 C -0.15 -4.70 5.13 30.69 0.16 -4.54 16 20 C 0.07 1.62 6.52 72.01 0.47 2.09 16 21 O -0.39 -9.80 10.13 -148.98 -1.51 -11.31 16 22 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.05 0.93 7.82 -2.39 -0.02 0.91 16 24 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.06 1.29 4.98 -2.39 -0.01 1.28 16 26 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.08 1.99 6.55 -2.39 -0.02 1.98 16 29 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 2.09 6.76 -2.38 -0.02 2.08 16 31 H 0.08 2.60 6.31 -2.39 -0.02 2.58 16 32 H -0.02 -0.87 7.18 -2.39 -0.02 -0.89 16 33 H 0.03 1.58 5.35 -2.38 -0.01 1.57 16 34 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 35 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.06 2.13 6.39 -2.39 -0.02 2.11 16 37 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.06 1.36 6.23 -2.39 -0.01 1.35 16 Total: -1.00 -66.65 284.73 1.41 -65.24 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 0.96 Total: 10.02 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: 3.93 Total: -23.54 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -3.87 Total: -86.60 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -1.51 Total: -11.31 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.19 kcal Total: -66.65 1.41 -65.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170204825.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.934 kcal (2) G-P(sol) polarization free energy of solvation -66.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds