Wall clock time and date at job start Sun Mar 29 2020 21:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46893 * 2 1 4 4 H 1.08993 * 109.49329 * 304.96885 * 3 2 1 5 5 C 1.53098 * 109.48002 * 184.94057 * 3 2 1 6 6 C 1.53180 * 109.16075 * 297.62693 * 5 3 2 7 7 H 1.08999 * 109.54515 * 62.88494 * 6 5 3 8 8 N 1.46903 * 109.61429 * 183.10882 * 6 5 3 9 9 C 1.46901 * 111.00197 * 65.64291 * 8 6 5 10 10 C 1.46894 * 110.99947 * 189.60178 * 8 6 5 11 11 C 1.50704 * 109.47264 * 170.00015 * 10 8 6 12 12 H 1.08001 * 119.99561 * 359.97438 * 11 10 8 13 13 C 1.37879 * 119.99933 * 179.97438 * 11 10 8 14 14 N 1.31512 * 120.00123 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99703 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47216 * 59.99806 * 15 13 11 17 17 H 1.48498 * 109.47339 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47215 * 300.00092 * 15 13 11 19 19 C 1.53175 * 109.03606 * 303.01560 * 6 5 3 20 20 C 1.53092 * 109.16344 * 56.98567 * 19 6 5 21 21 O 1.42905 * 109.48333 * 65.00085 * 3 2 1 22 22 H 1.09000 * 109.46947 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47452 * 300.00026 * 1 2 3 24 24 H 1.08997 * 109.46979 * 60.00077 * 1 2 3 25 25 H 1.08996 * 109.47261 * 239.99244 * 2 1 3 26 26 H 1.09006 * 109.46736 * 119.99414 * 2 1 3 27 27 H 1.08996 * 109.52270 * 177.71938 * 5 3 2 28 28 H 1.08998 * 109.51931 * 57.52860 * 5 3 2 29 29 H 1.08999 * 109.46764 * 59.99817 * 9 8 6 30 30 H 1.09001 * 109.46975 * 179.97438 * 9 8 6 31 31 H 1.09000 * 109.47302 * 300.00390 * 9 8 6 32 32 H 1.09009 * 109.47089 * 289.99420 * 10 8 6 33 33 H 1.09001 * 109.47806 * 49.99407 * 10 8 6 34 34 H 0.97003 * 119.99678 * 180.02562 * 14 13 11 35 35 H 1.09004 * 109.52714 * 297.07587 * 19 6 5 36 36 H 1.09001 * 109.57654 * 176.92317 * 19 6 5 37 37 H 1.08997 * 109.48111 * 182.40965 * 20 19 6 38 38 H 1.08999 * 109.49220 * 62.37875 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6060 1.9817 -0.8420 5 6 3.5659 1.4446 -0.1243 6 6 4.1704 0.7378 1.0928 7 1 3.8493 -0.3037 1.1064 8 7 5.6364 0.7992 1.0210 9 6 6.1118 2.1840 1.1409 10 6 6.2500 -0.0585 2.0435 11 6 7.7313 -0.1645 1.7874 12 1 8.1726 0.3532 0.9486 13 6 8.5230 -0.9224 2.6240 14 7 7.9856 -1.5524 3.6457 15 14 10.3590 -1.0543 2.3061 16 1 10.9696 0.2983 2.3622 17 1 10.9796 -1.9203 3.3406 18 1 10.5877 -1.6452 0.9631 19 6 3.6901 1.4388 2.3672 20 6 2.1594 1.4369 2.3954 21 8 1.6620 2.0816 1.2210 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.9266 2.4723 -0.1651 28 1 3.8579 0.9186 -1.0332 29 1 5.7911 2.5966 2.0974 30 1 7.2003 2.2006 1.0850 31 1 5.6967 2.7822 0.3297 32 1 6.0819 0.3746 3.0297 33 1 5.8020 -1.0513 2.0017 34 1 8.5427 -2.0853 4.2344 35 1 4.0533 2.4664 2.3768 36 1 4.0711 0.9097 3.2408 37 1 1.8114 1.9721 3.2788 38 1 1.7975 0.4092 2.4268 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170204828.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:57 Heat of formation + Delta-G solvation = -54.451494 kcal Electronic energy + Delta-G solvation = -16791.664777 eV Core-core repulsion = 14247.734376 eV Total energy + Delta-G solvation = -2543.930401 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.89534 -36.60002 -33.36228 -32.81457 -30.96236 -30.01664 -27.15426 -25.65884 -24.00469 -23.20161 -22.16784 -20.36556 -18.52823 -16.63895 -16.06308 -15.78084 -15.22014 -14.70050 -14.27467 -13.82380 -13.73304 -13.39931 -13.06073 -12.91291 -12.33049 -12.09618 -11.90411 -11.71633 -11.18525 -11.06441 -10.87304 -10.81422 -10.77615 -10.61113 -10.42763 -10.34652 -10.04215 -9.53557 -9.28106 -9.12945 -8.42601 -7.16894 -6.02663 -4.03829 3.33386 3.37273 3.40385 4.03020 4.42173 4.84173 4.88147 5.07669 5.14998 5.20419 5.32870 5.35527 5.43955 5.56259 5.65068 5.69386 5.82556 5.89913 5.97512 6.02641 6.09984 6.18070 6.26414 6.30479 6.32809 6.42106 6.50964 6.69928 6.81085 7.30333 7.35971 7.42935 7.80649 8.09710 8.22118 8.56968 9.03706 9.60287 11.08175 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.046787 B = 0.006048 C = 0.005962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.313191 B = 4628.592032 C = 4695.067036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.160 4.160 3 C 0.092 3.908 4 H 0.097 0.903 5 C -0.140 4.140 6 C 0.085 3.915 7 H 0.075 0.925 8 N -0.534 5.534 9 C 0.032 3.968 10 C 0.193 3.807 11 C -0.508 4.508 12 H 0.062 0.938 13 C 0.055 3.945 14 N -0.900 5.900 15 Si 0.898 3.102 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.276 1.276 19 C -0.190 4.190 20 C 0.063 3.937 21 O -0.379 6.379 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.016 0.984 30 H 0.072 0.928 31 H 0.046 0.954 32 H -0.007 1.007 33 H 0.027 0.973 34 H 0.261 0.739 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.242 4.939 -5.108 14.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.197 4.197 3 C 0.034 3.966 4 H 0.115 0.885 5 C -0.178 4.178 6 C -0.025 4.025 7 H 0.093 0.907 8 N -0.256 5.256 9 C -0.116 4.116 10 C 0.068 3.932 11 C -0.546 4.546 12 H 0.080 0.920 13 C -0.146 4.146 14 N -0.539 5.539 15 Si 0.726 3.274 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.202 1.202 19 C -0.229 4.229 20 C -0.014 4.014 21 O -0.298 6.298 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.034 0.966 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.010 0.990 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.134 4.791 -5.413 14.124 hybrid contribution 1.031 -0.148 0.819 1.325 sum -11.103 4.643 -4.593 12.882 Atomic orbital electron populations 1.21699 0.95581 1.01148 1.01968 1.22204 0.96456 0.97742 1.03313 1.22224 0.94224 0.92891 0.87247 0.88542 1.22253 0.94267 1.01746 0.99511 1.21707 0.90007 0.98627 0.92132 0.90657 1.62314 1.02818 1.08785 1.51706 1.22286 1.01562 0.89856 0.97929 1.19716 0.94507 0.91459 0.87535 1.21145 0.92149 1.29584 1.11744 0.91965 1.24985 0.98881 0.95625 0.95113 1.69948 1.35819 1.32115 1.16061 0.86562 0.84998 0.77970 0.77879 1.20299 1.21364 1.20171 1.22899 0.96178 1.02707 1.01127 1.22516 0.93592 0.97577 0.87756 1.87915 1.74713 1.53416 1.13801 0.93077 0.92389 0.92974 0.90902 0.90962 0.91243 0.90541 0.96558 0.90948 0.93561 0.98967 0.95498 0.92899 0.90953 0.90643 0.89606 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.81 37.16 0.36 -1.17 16 2 C -0.16 -1.92 4.74 -26.73 -0.13 -2.05 16 3 C 0.09 1.21 3.29 -26.68 -0.09 1.12 16 4 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 5 C -0.14 -2.10 4.91 -26.59 -0.13 -2.23 16 6 C 0.08 1.52 1.97 -67.53 -0.13 1.38 16 7 H 0.08 1.40 6.53 -51.93 -0.34 1.06 16 8 N -0.53 -11.55 4.71 -236.10 -1.11 -12.66 16 9 C 0.03 0.64 8.60 60.07 0.52 1.15 16 10 C 0.19 5.03 4.30 -4.98 -0.02 5.01 16 11 C -0.51 -14.34 8.46 -34.44 -0.29 -14.63 16 12 H 0.06 1.74 7.12 -52.49 -0.37 1.37 16 13 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 15 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 C -0.19 -3.18 4.70 -26.59 -0.13 -3.30 16 20 C 0.06 0.89 6.52 37.20 0.24 1.13 16 21 O -0.38 -5.52 10.13 -35.23 -0.36 -5.87 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.64 7.82 -51.93 -0.41 0.23 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.07 0.95 4.97 -51.93 -0.26 0.69 16 27 H 0.07 1.06 6.43 -51.93 -0.33 0.73 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.02 0.32 6.15 -51.93 -0.32 0.00 16 30 H 0.07 1.54 6.76 -51.93 -0.35 1.19 16 31 H 0.05 0.80 6.41 -51.93 -0.33 0.46 16 32 H -0.01 -0.21 7.14 -51.92 -0.37 -0.58 16 33 H 0.03 0.75 7.94 -51.93 -0.41 0.34 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.07 1.24 6.17 -51.93 -0.32 0.92 16 36 H 0.07 1.39 7.07 -51.93 -0.37 1.02 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.69 6.24 -51.93 -0.32 0.37 16 LS Contribution 285.64 15.07 4.30 4.30 Total: -1.00 -29.60 285.64 -7.52 -37.12 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -6.18 Total: -1.42 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 0.11 Total: -12.11 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: -0.38 Total: -38.73 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.36 Total: -5.87 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.60 -7.52 -37.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170204828.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.331 kcal (2) G-P(sol) polarization free energy of solvation -29.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds