Wall clock time and date at job start Sun Mar 29 2020 22:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47263 * 2 1 4 4 C 1.52998 * 109.47052 * 239.99780 * 2 1 3 5 5 C 1.52999 * 109.47436 * 175.00185 * 4 2 1 6 6 C 1.50696 * 109.47367 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00425 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99936 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00299 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 120.00074 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47050 * 0.02562 * 10 8 6 12 12 H 1.48510 * 109.46709 * 120.00463 * 10 8 6 13 13 H 1.48502 * 109.47315 * 240.00023 * 10 8 6 14 14 N 1.46899 * 109.46886 * 120.00103 * 2 1 3 15 15 C 1.46898 * 110.99876 * 274.99853 * 14 2 1 16 16 H 1.09001 * 110.44046 * 36.08783 * 15 14 2 17 17 C 1.54817 * 110.48636 * 273.54744 * 15 14 2 18 18 C 1.54998 * 102.12466 * 220.42422 * 17 15 14 19 19 O 1.44478 * 103.44508 * 37.02046 * 18 17 15 20 20 C 1.43746 * 106.98554 * 319.94809 * 19 18 17 21 21 H 1.09001 * 110.00171 * 267.01967 * 20 19 18 22 22 C 1.52999 * 109.87960 * 145.93890 * 20 19 18 23 23 H 1.09000 * 109.47009 * 60.00227 * 1 2 3 24 24 H 1.08998 * 109.47263 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46904 * 299.99982 * 1 2 3 26 26 H 1.08998 * 109.47232 * 295.00163 * 4 2 1 27 27 H 1.09005 * 109.47412 * 54.99996 * 4 2 1 28 28 H 1.08998 * 109.46892 * 300.00186 * 5 4 2 29 29 H 1.09005 * 109.46974 * 59.99543 * 5 4 2 30 30 H 0.96995 * 120.00550 * 180.02562 * 9 8 6 31 31 H 1.00897 * 110.99718 * 151.04684 * 14 2 1 32 32 H 1.09002 * 110.90844 * 338.64257 * 17 15 14 33 33 H 1.08997 * 110.90682 * 102.21347 * 17 15 14 34 34 H 1.08997 * 110.61738 * 155.54187 * 18 17 15 35 35 H 1.08997 * 110.62197 * 278.54323 * 18 17 15 36 36 H 1.09005 * 109.46957 * 302.16589 * 22 20 19 37 37 H 1.08998 * 109.47031 * 62.16531 * 22 20 19 38 38 H 1.09005 * 109.46795 * 182.16659 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 6 4.0670 -1.3233 -2.5445 7 1 3.3686 -1.8038 -3.2136 8 6 5.4182 -1.3594 -2.8163 9 7 6.2689 -0.7748 -2.0013 10 14 6.0409 -2.2400 -4.3416 11 1 4.8910 -2.8116 -5.0873 12 1 6.7633 -1.2756 -5.2097 13 1 6.9636 -3.3324 -3.9406 14 7 2.0196 -0.6925 1.1994 15 6 2.0824 0.2226 2.3469 16 1 1.2525 0.9286 2.3166 17 6 3.4345 0.9764 2.3654 18 6 3.7862 0.9771 3.8749 19 8 3.3253 -0.3151 4.3279 20 6 2.0731 -0.5689 3.6691 21 1 1.2472 -0.2332 4.2961 22 6 1.9315 -2.0645 3.3792 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.7516 -1.7715 -1.2055 27 1 1.6054 -0.2618 -2.1370 28 1 3.8532 0.4368 -1.3574 29 1 3.9994 -1.0729 -0.4259 30 1 7.2195 -0.7998 -2.1927 31 1 2.9172 -1.1205 1.0287 32 1 4.1880 0.4378 1.7906 33 1 3.3176 1.9940 1.9928 34 1 4.8624 1.0734 4.0182 35 1 3.2560 1.7767 4.3922 36 1 2.7698 -2.3969 2.7669 37 1 1.9257 -2.6176 4.3184 38 1 0.9981 -2.2443 2.8457 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172476171.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:14 Heat of formation + Delta-G solvation = -64.965024 kcal Electronic energy + Delta-G solvation = -16555.196236 eV Core-core repulsion = 14010.809935 eV Total energy + Delta-G solvation = -2544.386302 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.64406 -36.71072 -33.40771 -32.15325 -31.17556 -29.55552 -28.21225 -25.41758 -24.73506 -22.00604 -21.55458 -20.01405 -19.57411 -16.67649 -16.17000 -15.69803 -15.36749 -14.94560 -14.50930 -13.88678 -13.37859 -12.99532 -12.70158 -12.48917 -12.28553 -12.09449 -11.87684 -11.67442 -11.33420 -11.14181 -10.98984 -10.91651 -10.78374 -10.59412 -10.44531 -10.23120 -9.78954 -9.51620 -9.28591 -9.03760 -8.37795 -7.97757 -6.02668 -4.04658 3.29733 3.37507 3.41673 4.04551 4.41030 4.44486 4.84919 5.02217 5.22835 5.23470 5.33149 5.37578 5.52245 5.67742 5.70440 5.73243 5.79360 5.91570 5.93915 6.10154 6.18104 6.25684 6.29537 6.33486 6.48674 6.52944 6.65563 6.88775 7.05863 7.09733 7.48615 7.59708 7.77117 7.86818 7.97028 8.40395 9.02163 9.59839 11.08476 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028333 B = 0.006755 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.022478 B = 4143.873240 C = 4630.300757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.081 3.919 3 H 0.037 0.963 4 C -0.115 4.115 5 C 0.022 3.978 6 C -0.519 4.519 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.284 1.284 14 N -0.672 5.672 15 C 0.060 3.940 16 H 0.085 0.915 17 C -0.188 4.188 18 C 0.050 3.950 19 O -0.379 6.379 20 C 0.079 3.921 21 H 0.062 0.938 22 C -0.129 4.129 23 H 0.050 0.950 24 H 0.058 0.942 25 H 0.042 0.958 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.011 0.989 29 H 0.015 0.985 30 H 0.259 0.741 31 H 0.356 0.644 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.044 0.956 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.659 3.143 9.626 13.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.029 4.029 3 H 0.056 0.944 4 C -0.153 4.153 5 C -0.015 4.015 6 C -0.557 4.557 7 H 0.074 0.926 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 N -0.307 5.307 15 C -0.051 4.051 16 H 0.103 0.897 17 C -0.227 4.227 18 C -0.027 4.027 19 O -0.298 6.298 20 C 0.020 3.980 21 H 0.080 0.920 22 C -0.186 4.186 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.030 0.970 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.179 0.821 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.992 2.762 9.940 13.685 hybrid contribution 1.213 0.400 -1.232 1.774 sum -7.779 3.162 8.708 12.097 Atomic orbital electron populations 1.21800 0.95784 1.01724 1.00087 1.21615 0.94408 0.96204 0.90626 0.94443 1.21826 0.99681 0.99458 0.94288 1.19118 0.88756 0.96783 0.96885 1.21273 0.91962 1.34212 1.08290 0.92636 1.25023 0.97097 0.95604 0.96705 1.69961 1.02319 1.44186 1.36974 0.86553 0.78866 0.79493 0.83201 1.19737 1.21075 1.20995 1.60758 1.34921 1.31147 1.03846 1.22950 0.96447 0.93363 0.92362 0.89730 1.23908 0.99143 1.02220 0.97428 1.23425 1.00139 0.85927 0.93205 1.88905 1.37775 1.35807 1.67314 1.22755 0.86246 0.97380 0.91573 0.91980 1.21611 1.03609 0.92958 1.00432 0.93067 0.92332 0.93899 0.92446 0.92768 0.97033 0.96729 0.93091 0.82055 0.89386 0.90527 0.89197 0.92659 0.91761 0.93697 0.90440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.40 37.16 0.35 -1.57 16 2 C 0.08 1.35 2.51 -67.71 -0.17 1.18 16 3 H 0.04 0.65 7.74 -51.93 -0.40 0.25 16 4 C -0.11 -2.31 4.74 -26.73 -0.13 -2.43 16 5 C 0.02 0.54 4.80 -27.89 -0.13 0.41 16 6 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 7 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 10 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 N -0.67 -10.80 4.37 -98.14 -0.43 -11.23 16 15 C 0.06 0.86 3.11 -66.18 -0.21 0.65 16 16 H 0.08 1.11 7.20 -51.93 -0.37 0.74 16 17 C -0.19 -2.72 6.65 -24.72 -0.16 -2.89 16 18 C 0.05 0.66 7.73 38.21 0.30 0.95 16 19 O -0.38 -5.84 11.19 -35.23 -0.39 -6.23 16 20 C 0.08 1.09 4.06 -26.16 -0.11 0.98 16 21 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 22 C -0.13 -1.78 8.57 37.16 0.32 -1.46 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.04 0.55 7.45 -51.93 -0.39 0.16 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.01 0.38 6.43 -51.93 -0.33 0.05 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.36 6.58 5.37 -39.29 -0.21 6.36 16 32 H 0.09 1.52 7.63 -51.93 -0.40 1.13 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.99 7.39 -51.93 -0.38 0.61 16 37 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 1.03 7.89 -51.93 -0.41 0.62 16 LS Contribution 300.41 15.07 4.53 4.53 Total: -1.00 -29.11 300.41 -7.60 -36.72 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -6.67 Total: 2.96 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -0.35 Total: -17.52 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.31 Total: -37.08 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.39 Total: -6.23 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.11 -7.60 -36.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476171.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.250 kcal (2) G-P(sol) polarization free energy of solvation -29.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds