Wall clock time and date at job start Sun Mar 29 2020 22:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47263 * 2 1 4 4 C 1.52998 * 109.47052 * 239.99780 * 2 1 3 5 5 C 1.52999 * 109.47436 * 175.00185 * 4 2 1 6 6 C 1.50696 * 109.47367 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00425 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99936 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00299 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 120.00074 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47050 * 0.02562 * 10 8 6 12 12 H 1.48510 * 109.46709 * 120.00463 * 10 8 6 13 13 H 1.48502 * 109.47315 * 240.00023 * 10 8 6 14 14 N 1.46899 * 109.46886 * 120.00103 * 2 1 3 15 15 C 1.46898 * 110.99876 * 274.99853 * 14 2 1 16 16 H 1.09001 * 110.44046 * 36.08783 * 15 14 2 17 17 C 1.54817 * 110.48636 * 273.54744 * 15 14 2 18 18 C 1.54998 * 102.12466 * 220.42422 * 17 15 14 19 19 O 1.44478 * 103.44508 * 37.02046 * 18 17 15 20 20 C 1.43746 * 106.98554 * 319.94809 * 19 18 17 21 21 H 1.09001 * 110.00171 * 267.01967 * 20 19 18 22 22 C 1.52999 * 109.87960 * 145.93890 * 20 19 18 23 23 H 1.09000 * 109.47009 * 60.00227 * 1 2 3 24 24 H 1.08998 * 109.47263 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46904 * 299.99982 * 1 2 3 26 26 H 1.08998 * 109.47232 * 295.00163 * 4 2 1 27 27 H 1.09005 * 109.47412 * 54.99996 * 4 2 1 28 28 H 1.08998 * 109.46892 * 300.00186 * 5 4 2 29 29 H 1.09005 * 109.46974 * 59.99543 * 5 4 2 30 30 H 0.96995 * 120.00550 * 180.02562 * 9 8 6 31 31 H 1.00897 * 110.99718 * 151.04684 * 14 2 1 32 32 H 1.09002 * 110.90844 * 338.64257 * 17 15 14 33 33 H 1.08997 * 110.90682 * 102.21347 * 17 15 14 34 34 H 1.08997 * 110.61738 * 155.54187 * 18 17 15 35 35 H 1.08997 * 110.62197 * 278.54323 * 18 17 15 36 36 H 1.09005 * 109.46957 * 302.16589 * 22 20 19 37 37 H 1.08998 * 109.47031 * 62.16531 * 22 20 19 38 38 H 1.09005 * 109.46795 * 182.16659 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 6 4.0670 -1.3233 -2.5445 7 1 3.3686 -1.8038 -3.2136 8 6 5.4182 -1.3594 -2.8163 9 7 6.2689 -0.7748 -2.0013 10 14 6.0409 -2.2400 -4.3416 11 1 4.8910 -2.8116 -5.0873 12 1 6.7633 -1.2756 -5.2097 13 1 6.9636 -3.3324 -3.9406 14 7 2.0196 -0.6925 1.1994 15 6 2.0824 0.2226 2.3469 16 1 1.2525 0.9286 2.3166 17 6 3.4345 0.9764 2.3654 18 6 3.7862 0.9771 3.8749 19 8 3.3253 -0.3151 4.3279 20 6 2.0731 -0.5689 3.6691 21 1 1.2472 -0.2332 4.2961 22 6 1.9315 -2.0645 3.3792 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.7516 -1.7715 -1.2055 27 1 1.6054 -0.2618 -2.1370 28 1 3.8532 0.4368 -1.3574 29 1 3.9994 -1.0729 -0.4259 30 1 7.2195 -0.7998 -2.1927 31 1 2.9172 -1.1205 1.0287 32 1 4.1880 0.4378 1.7906 33 1 3.3176 1.9940 1.9928 34 1 4.8624 1.0734 4.0182 35 1 3.2560 1.7767 4.3922 36 1 2.7698 -2.3969 2.7669 37 1 1.9257 -2.6176 4.3184 38 1 0.9981 -2.2443 2.8457 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172476171.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:14 Heat of formation + Delta-G solvation = -82.990770 kcal Electronic energy + Delta-G solvation = -16555.977891 eV Core-core repulsion = 14010.809935 eV Total energy + Delta-G solvation = -2545.167957 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.80137 -38.10493 -35.31329 -33.69579 -32.29347 -31.29864 -29.41372 -27.10102 -26.10612 -23.33891 -23.12567 -21.35998 -20.90717 -18.56726 -17.60842 -16.91950 -16.57500 -16.50724 -16.18838 -15.25171 -14.73094 -14.48391 -14.20559 -14.11784 -13.51266 -13.40792 -13.16817 -13.04570 -12.97526 -12.86372 -12.42644 -12.33977 -12.14468 -12.04820 -11.80667 -11.59192 -11.56373 -11.26366 -10.94181 -10.61058 -10.56098 -9.27668 -8.21471 -6.31820 1.37791 1.38651 1.51511 2.39465 2.96036 3.10917 3.16194 3.70478 3.91381 4.05023 4.14047 4.16791 4.27795 4.41843 4.48973 4.59015 4.63137 4.73205 4.79746 4.83352 4.97501 5.02359 5.05131 5.09711 5.12904 5.17251 5.23881 5.46570 5.51548 5.54835 5.71151 5.83848 6.00367 6.23842 6.26577 6.40024 6.85108 7.37448 8.89750 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028333 B = 0.006755 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.022478 B = 4143.873240 C = 4630.300757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.086 3.914 3 H 0.030 0.970 4 C -0.103 4.103 5 C 0.031 3.969 6 C -0.542 4.542 7 H 0.057 0.943 8 C 0.001 3.999 9 N -0.930 5.930 10 Si 0.961 3.039 11 H -0.263 1.263 12 H -0.278 1.278 13 H -0.279 1.279 14 N -0.670 5.670 15 C 0.061 3.939 16 H 0.105 0.895 17 C -0.188 4.188 18 C 0.052 3.948 19 O -0.401 6.401 20 C 0.078 3.922 21 H 0.087 0.913 22 C -0.125 4.125 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.056 0.944 28 H -0.017 1.017 29 H -0.004 1.004 30 H 0.262 0.738 31 H 0.339 0.661 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.038 0.962 37 H 0.054 0.946 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.112 3.303 9.784 14.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.023 4.023 3 H 0.048 0.952 4 C -0.141 4.141 5 C -0.006 4.006 6 C -0.580 4.580 7 H 0.076 0.924 8 C -0.197 4.197 9 N -0.571 5.571 10 Si 0.786 3.214 11 H -0.187 1.187 12 H -0.204 1.204 13 H -0.205 1.205 14 N -0.302 5.302 15 C -0.050 4.050 16 H 0.123 0.877 17 C -0.227 4.227 18 C -0.024 4.024 19 O -0.321 6.321 20 C 0.020 3.980 21 H 0.105 0.895 22 C -0.182 4.182 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.002 0.998 29 H 0.014 0.986 30 H 0.071 0.929 31 H 0.159 0.841 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.470 2.929 10.103 14.842 hybrid contribution 1.691 0.367 -1.259 2.140 sum -8.780 3.297 8.844 12.891 Atomic orbital electron populations 1.21715 0.92940 1.02253 1.01577 1.21548 0.96448 0.95061 0.89254 0.95226 1.21650 0.96064 0.99874 0.96468 1.18964 0.92176 0.94313 0.95166 1.21733 0.92514 1.34489 1.09313 0.92438 1.25937 0.97403 0.96347 0.99984 1.70090 1.02675 1.45413 1.38877 0.85453 0.78422 0.78299 0.79210 1.18659 1.20420 1.20474 1.60845 1.33669 1.31529 1.04177 1.23070 0.96748 0.93379 0.91843 0.87698 1.23840 0.98447 1.02199 0.98242 1.23542 1.00843 0.85962 0.92065 1.88880 1.38611 1.36990 1.67604 1.22874 0.86477 0.97118 0.91506 0.89478 1.21571 1.02772 0.93398 1.00494 0.92096 0.92263 0.91918 0.92708 0.92514 0.99836 0.98620 0.92909 0.84057 0.93243 0.89563 0.88944 0.89764 0.94277 0.92738 0.89831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 9.40 71.98 0.68 -2.57 16 2 C 0.09 2.82 2.51 44.92 0.11 2.93 16 3 H 0.03 1.02 7.74 -2.39 -0.02 1.00 16 4 C -0.10 -4.16 4.74 30.59 0.15 -4.01 16 5 C 0.03 1.61 4.80 29.85 0.14 1.75 16 6 C -0.54 -30.96 9.11 25.60 0.23 -30.73 16 7 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 8 C 0.00 0.07 5.46 84.65 0.46 0.53 16 9 N -0.93 -56.57 13.29 21.45 0.28 -56.28 16 10 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 11 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 14 N -0.67 -21.37 4.37 -464.42 -2.03 -23.40 16 15 C 0.06 1.64 3.11 45.91 0.14 1.79 16 16 H 0.11 2.45 7.20 -2.39 -0.02 2.43 16 17 C -0.19 -5.44 6.65 31.90 0.21 -5.23 16 18 C 0.05 1.32 7.73 72.67 0.56 1.88 16 19 O -0.40 -11.93 11.19 -148.98 -1.67 -13.60 16 20 C 0.08 2.03 4.06 30.97 0.13 2.16 16 21 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 22 C -0.12 -3.34 8.57 71.98 0.62 -2.73 16 23 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.06 1.37 7.45 -2.39 -0.02 1.36 16 26 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 28 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 29 H 0.00 -0.24 6.43 -2.38 -0.02 -0.26 16 30 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 31 H 0.34 13.03 5.37 -89.70 -0.48 12.55 16 32 H 0.05 1.81 7.63 -2.39 -0.02 1.79 16 33 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.04 1.22 7.39 -2.38 -0.02 1.21 16 37 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 2.11 7.89 -2.38 -0.02 2.09 16 Total: -1.00 -63.02 300.41 2.58 -60.44 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.53 Total: 20.44 kcal Atomic # 6 Polarization: -37.67 SS G_CDS: 3.43 Total: -34.24 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -1.74 Total: -79.68 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -1.67 Total: -13.60 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -63.02 2.58 -60.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476171.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.549 kcal (2) G-P(sol) polarization free energy of solvation -63.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds