Wall clock time and date at job start Sun Mar 29 2020 22:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.47262 * 2 1 4 4 C 1.53005 * 109.46996 * 119.99650 * 2 1 3 5 5 C 1.53003 * 109.46941 * 180.71682 * 4 2 1 6 6 C 1.50702 * 109.46926 * 179.35452 * 5 4 2 7 7 H 1.08004 * 119.99754 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00026 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00150 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99654 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.46825 * 269.99927 * 10 8 6 12 12 H 1.48487 * 109.47274 * 30.00420 * 10 8 6 13 13 H 1.48507 * 109.46574 * 150.00486 * 10 8 6 14 14 N 1.46891 * 109.47215 * 239.99577 * 2 1 3 15 15 C 1.48566 * 111.00282 * 72.70362 * 14 2 1 16 16 C 1.54369 * 104.59980 * 200.96032 * 15 14 2 17 17 H 1.08997 * 110.41400 * 142.79037 * 16 15 14 18 18 O 1.42900 * 110.32637 * 264.95595 * 16 15 14 19 19 C 1.54262 * 105.05951 * 23.85258 * 16 15 14 20 20 C 1.48562 * 111.00434 * 317.28953 * 14 2 1 21 21 H 1.09000 * 110.41160 * 40.13872 * 20 14 2 22 22 C 1.53006 * 110.40652 * 277.81931 * 20 14 2 23 23 H 1.08995 * 109.47204 * 187.95301 * 1 2 3 24 24 H 1.09001 * 109.46757 * 307.95563 * 1 2 3 25 25 H 1.08997 * 109.47018 * 67.95779 * 1 2 3 26 26 H 1.08997 * 109.47000 * 60.71867 * 4 2 1 27 27 H 1.08997 * 109.47233 * 300.71669 * 4 2 1 28 28 H 1.08996 * 109.47267 * 59.35363 * 5 4 2 29 29 H 1.08997 * 109.46940 * 299.34938 * 5 4 2 30 30 H 0.96995 * 120.00162 * 179.97438 * 9 8 6 31 31 H 1.08999 * 110.40963 * 319.74220 * 15 14 2 32 32 H 1.09005 * 110.40694 * 82.17541 * 15 14 2 33 33 H 0.96699 * 114.00355 * 295.64124 * 18 16 15 34 34 H 1.09006 * 110.32001 * 241.10255 * 19 16 15 35 35 H 1.09001 * 110.41226 * 118.94370 * 19 16 15 36 36 H 1.09003 * 109.47409 * 80.49835 * 22 20 14 37 37 H 1.09004 * 109.46739 * 200.49765 * 22 20 14 38 38 H 1.08993 * 109.47242 * 320.49429 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7056 1.2584 6 6 4.0721 -1.4021 2.4969 7 1 3.3701 -1.8142 3.2067 8 6 5.4275 -1.5122 2.7243 9 7 5.8657 -2.1195 3.8053 10 14 6.6414 -0.7987 1.4968 11 1 6.9800 -1.8273 0.4806 12 1 6.0332 0.3783 0.8262 13 1 7.8761 -0.3801 2.2080 14 7 2.0197 -0.6925 -1.1993 15 6 1.8084 0.1345 -2.4153 16 6 1.8463 -0.8742 -3.5833 17 1 1.1207 -0.5977 -4.3481 18 8 3.1591 -0.9346 -4.1446 19 6 1.4700 -2.2312 -2.9534 20 6 1.2364 -1.9281 -1.4578 21 1 0.1779 -1.7547 -1.2641 22 6 1.7545 -3.0790 -0.5929 23 1 -0.3633 -1.0177 0.1422 24 1 -0.3633 0.6321 0.8103 25 1 -0.3633 0.3857 -0.9525 26 1 1.6873 -1.7525 1.2429 27 1 1.6663 -0.2148 2.1392 28 1 3.9228 0.3257 1.2531 29 1 3.9438 -1.2221 0.3743 30 1 6.8192 -2.1973 3.9651 31 1 0.8392 0.6313 -2.3734 32 1 2.6082 0.8677 -2.5200 33 1 3.4497 -0.1087 -4.5552 34 1 2.2867 -2.9432 -3.0724 35 1 0.5592 -2.6215 -3.4074 36 1 1.3443 -2.9907 0.4132 37 1 1.4455 -4.0289 -1.0291 38 1 2.8427 -3.0374 -0.5466 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491890.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:21 Heat of formation + Delta-G solvation = -47.823571 kcal Electronic energy + Delta-G solvation = -16939.353435 eV Core-core repulsion = 14395.710443 eV Total energy + Delta-G solvation = -2543.642992 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.79277 -36.58522 -33.97596 -32.50045 -31.08234 -29.76180 -28.27213 -25.42490 -25.21250 -21.87980 -20.85871 -20.32540 -18.82901 -17.22767 -16.59521 -16.14434 -15.06183 -14.63441 -14.20434 -14.07223 -13.27704 -13.00660 -12.85071 -12.49307 -12.34096 -12.20214 -11.90955 -11.75264 -11.41045 -11.25357 -11.11688 -10.91142 -10.56248 -10.52545 -10.19492 -9.89094 -9.77560 -9.41517 -9.31970 -8.94293 -8.38516 -7.99038 -5.90490 -3.86185 3.44715 3.50483 3.58297 4.16671 4.24590 4.60529 4.67414 4.77277 5.10757 5.18366 5.31709 5.44285 5.45754 5.49125 5.57127 5.61369 5.75322 5.81768 5.90459 6.03801 6.08931 6.15843 6.23498 6.26830 6.44691 6.59018 6.64598 6.93713 7.16062 7.25121 7.44745 7.61290 7.70301 7.78825 7.98922 8.69913 9.15706 9.74368 11.23328 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026705 B = 0.008569 C = 0.007602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.225503 B = 3266.745099 C = 3682.122584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.066 3.934 3 H 0.074 0.926 4 C -0.101 4.101 5 C -0.004 4.004 6 C -0.515 4.515 7 H 0.067 0.933 8 C 0.064 3.936 9 N -0.910 5.910 10 Si 0.881 3.119 11 H -0.277 1.277 12 H -0.265 1.265 13 H -0.293 1.293 14 N -0.482 5.482 15 C -0.003 4.003 16 C 0.102 3.898 17 H 0.056 0.944 18 O -0.556 6.556 19 C -0.116 4.116 20 C 0.053 3.947 21 H 0.059 0.941 22 C -0.143 4.143 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.006 0.994 29 H 0.028 0.972 30 H 0.260 0.740 31 H 0.047 0.953 32 H 0.082 0.918 33 H 0.373 0.627 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.049 0.951 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.373 3.775 -14.904 19.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.042 4.042 3 H 0.092 0.908 4 C -0.138 4.138 5 C -0.042 4.042 6 C -0.553 4.553 7 H 0.085 0.915 8 C -0.136 4.136 9 N -0.550 5.550 10 Si 0.709 3.291 11 H -0.203 1.203 12 H -0.190 1.190 13 H -0.219 1.219 14 N -0.206 5.206 15 C -0.131 4.131 16 C 0.042 3.958 17 H 0.074 0.926 18 O -0.361 6.361 19 C -0.154 4.154 20 C -0.055 4.055 21 H 0.077 0.923 22 C -0.200 4.200 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.024 0.976 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.220 0.780 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.675 3.002 -14.476 18.235 hybrid contribution -0.138 1.243 -0.800 1.485 sum -10.813 4.246 -15.275 19.191 Atomic orbital electron populations 1.22482 0.98518 1.02093 1.01115 1.22025 0.91564 0.98460 0.92197 0.90809 1.21726 0.99327 0.99717 0.93063 1.19450 0.91134 0.96262 0.97318 1.21256 0.92377 1.35750 1.05918 0.91480 1.25012 0.98487 0.94925 0.95176 1.69930 1.14172 1.44177 1.26746 0.86748 0.80399 0.80387 0.81559 1.20322 1.18997 1.21904 1.65663 1.50610 1.03454 1.00863 1.23862 1.00380 0.96804 0.92084 1.22508 0.84284 0.95961 0.93032 0.92592 1.86607 1.32601 1.39349 1.77529 1.22441 1.01676 0.96623 0.94687 1.22788 0.96363 0.92277 0.94042 0.92299 1.21977 1.03717 0.95219 0.99124 0.92004 0.92193 0.93441 0.91595 0.93021 0.97612 0.95325 0.93025 0.93518 0.89999 0.77996 0.89543 0.91030 0.91589 0.93230 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 7.92 37.16 0.29 -2.13 16 2 C 0.07 1.09 2.35 -67.71 -0.16 0.93 16 3 H 0.07 1.23 8.05 -51.93 -0.42 0.82 16 4 C -0.10 -2.04 4.34 -26.73 -0.12 -2.15 16 5 C 0.00 -0.11 3.88 -27.88 -0.11 -0.21 16 6 C -0.51 -15.17 9.66 -34.44 -0.33 -15.51 16 7 H 0.07 2.11 7.99 -52.48 -0.42 1.69 16 8 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 9 N -0.91 -29.05 13.96 55.43 0.77 -28.28 16 10 Si 0.88 23.08 27.47 -169.99 -4.67 18.41 16 11 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.27 -6.76 6.54 56.52 0.37 -6.40 16 13 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 14 N -0.48 -7.82 4.33 -214.24 -0.93 -8.74 16 15 C 0.00 -0.04 6.05 -2.18 -0.01 -0.05 16 16 C 0.10 1.22 4.42 -25.35 -0.11 1.11 16 17 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 18 O -0.56 -7.33 13.26 -35.23 -0.47 -7.79 16 19 C -0.12 -1.49 6.32 -25.35 -0.16 -1.65 16 20 C 0.05 0.77 2.50 -66.07 -0.17 0.60 16 21 H 0.06 0.77 5.29 -51.93 -0.27 0.50 16 22 C -0.14 -2.28 8.33 37.16 0.31 -1.97 16 23 H 0.06 0.81 6.48 -51.93 -0.34 0.47 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.56 6.45 -51.93 -0.33 0.22 16 26 H 0.07 1.32 4.59 -51.93 -0.24 1.08 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.01 0.14 7.20 -51.93 -0.37 -0.23 16 29 H 0.03 0.73 6.75 -51.93 -0.35 0.38 16 30 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 31 H 0.05 0.54 6.34 -51.93 -0.33 0.21 16 32 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16 33 H 0.37 3.24 9.12 45.56 0.42 3.65 16 34 H 0.09 1.25 7.70 -51.93 -0.40 0.85 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.09 5.65 -51.93 -0.29 0.80 16 37 H 0.05 0.67 8.07 -51.93 -0.42 0.25 16 38 H 0.08 1.47 7.81 -51.93 -0.41 1.07 16 LS Contribution 287.47 15.07 4.33 4.33 Total: -1.00 -33.28 287.47 -7.07 -40.36 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -5.46 Total: 0.90 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -0.66 Total: -19.19 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: -0.15 Total: -37.02 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: -0.47 Total: -7.79 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -4.67 Total: 18.41 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -33.28 -7.07 -40.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491890.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.464 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds