Wall clock time and date at job start Sun Mar 29 2020 22:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.47262 * 2 1 4 4 C 1.53005 * 109.46996 * 119.99650 * 2 1 3 5 5 C 1.53003 * 109.46941 * 180.71682 * 4 2 1 6 6 C 1.50702 * 109.46926 * 179.35452 * 5 4 2 7 7 H 1.08004 * 119.99754 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00026 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00150 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99654 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.46825 * 269.99927 * 10 8 6 12 12 H 1.48487 * 109.47274 * 30.00420 * 10 8 6 13 13 H 1.48507 * 109.46574 * 150.00486 * 10 8 6 14 14 N 1.46891 * 109.47215 * 239.99577 * 2 1 3 15 15 C 1.48566 * 111.00282 * 72.70362 * 14 2 1 16 16 C 1.54369 * 104.59980 * 200.96032 * 15 14 2 17 17 H 1.08997 * 110.41400 * 142.79037 * 16 15 14 18 18 O 1.42900 * 110.32637 * 264.95595 * 16 15 14 19 19 C 1.54262 * 105.05951 * 23.85258 * 16 15 14 20 20 C 1.48562 * 111.00434 * 317.28953 * 14 2 1 21 21 H 1.09000 * 110.41160 * 40.13872 * 20 14 2 22 22 C 1.53006 * 110.40652 * 277.81931 * 20 14 2 23 23 H 1.08995 * 109.47204 * 187.95301 * 1 2 3 24 24 H 1.09001 * 109.46757 * 307.95563 * 1 2 3 25 25 H 1.08997 * 109.47018 * 67.95779 * 1 2 3 26 26 H 1.08997 * 109.47000 * 60.71867 * 4 2 1 27 27 H 1.08997 * 109.47233 * 300.71669 * 4 2 1 28 28 H 1.08996 * 109.47267 * 59.35363 * 5 4 2 29 29 H 1.08997 * 109.46940 * 299.34938 * 5 4 2 30 30 H 0.96995 * 120.00162 * 179.97438 * 9 8 6 31 31 H 1.08999 * 110.40963 * 319.74220 * 15 14 2 32 32 H 1.09005 * 110.40694 * 82.17541 * 15 14 2 33 33 H 0.96699 * 114.00355 * 295.64124 * 18 16 15 34 34 H 1.09006 * 110.32001 * 241.10255 * 19 16 15 35 35 H 1.09001 * 110.41226 * 118.94370 * 19 16 15 36 36 H 1.09003 * 109.47409 * 80.49835 * 22 20 14 37 37 H 1.09004 * 109.46739 * 200.49765 * 22 20 14 38 38 H 1.08993 * 109.47242 * 320.49429 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7056 1.2584 6 6 4.0721 -1.4021 2.4969 7 1 3.3701 -1.8142 3.2067 8 6 5.4275 -1.5122 2.7243 9 7 5.8657 -2.1195 3.8053 10 14 6.6414 -0.7987 1.4968 11 1 6.9800 -1.8273 0.4806 12 1 6.0332 0.3783 0.8262 13 1 7.8761 -0.3801 2.2080 14 7 2.0197 -0.6925 -1.1993 15 6 1.8084 0.1345 -2.4153 16 6 1.8463 -0.8742 -3.5833 17 1 1.1207 -0.5977 -4.3481 18 8 3.1591 -0.9346 -4.1446 19 6 1.4700 -2.2312 -2.9534 20 6 1.2364 -1.9281 -1.4578 21 1 0.1779 -1.7547 -1.2641 22 6 1.7545 -3.0790 -0.5929 23 1 -0.3633 -1.0177 0.1422 24 1 -0.3633 0.6321 0.8103 25 1 -0.3633 0.3857 -0.9525 26 1 1.6873 -1.7525 1.2429 27 1 1.6663 -0.2148 2.1392 28 1 3.9228 0.3257 1.2531 29 1 3.9438 -1.2221 0.3743 30 1 6.8192 -2.1973 3.9651 31 1 0.8392 0.6313 -2.3734 32 1 2.6082 0.8677 -2.5200 33 1 3.4497 -0.1087 -4.5552 34 1 2.2867 -2.9432 -3.0724 35 1 0.5592 -2.6215 -3.4074 36 1 1.3443 -2.9907 0.4132 37 1 1.4455 -4.0289 -1.0291 38 1 2.8427 -3.0374 -0.5466 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491890.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:21 Heat of formation + Delta-G solvation = -73.230167 kcal Electronic energy + Delta-G solvation = -16940.455148 eV Core-core repulsion = 14395.710443 eV Total energy + Delta-G solvation = -2544.744705 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.89346 -37.66698 -35.62000 -34.31747 -32.52272 -31.29671 -29.34699 -27.19863 -26.37195 -23.38755 -22.07781 -21.83891 -20.07031 -18.82284 -18.16827 -17.31385 -16.36132 -16.15731 -15.78088 -15.23479 -14.81379 -14.43895 -14.28811 -14.04543 -13.81484 -13.36038 -13.22262 -13.05680 -12.91412 -12.85464 -12.42982 -12.20813 -11.98761 -11.83299 -11.68397 -11.53665 -11.37117 -11.09422 -10.96985 -10.73117 -10.69671 -9.12689 -8.27251 -6.28141 1.34524 1.36216 1.49511 2.37864 3.08629 3.10120 3.37763 3.70685 3.76085 4.05126 4.18151 4.25788 4.32761 4.39527 4.53752 4.61662 4.66302 4.68285 4.82102 4.85376 4.90916 4.99882 5.01617 5.09875 5.12407 5.23207 5.26339 5.39865 5.48040 5.71173 5.72559 5.79838 6.13994 6.29595 6.35153 6.80230 6.98785 7.36151 8.89852 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026705 B = 0.008569 C = 0.007602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.225503 B = 3266.745099 C = 3682.122584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.073 3.927 3 H 0.071 0.929 4 C -0.097 4.097 5 C 0.008 3.992 6 C -0.525 4.525 7 H 0.030 0.970 8 C 0.004 3.996 9 N -0.954 5.954 10 Si 0.950 3.050 11 H -0.273 1.273 12 H -0.253 1.253 13 H -0.283 1.283 14 N -0.517 5.517 15 C -0.001 4.001 16 C 0.103 3.897 17 H 0.091 0.909 18 O -0.582 6.582 19 C -0.117 4.117 20 C 0.054 3.946 21 H 0.080 0.920 22 C -0.140 4.140 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.045 0.955 28 H 0.001 0.999 29 H 0.021 0.979 30 H 0.264 0.736 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.391 0.609 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.647 5.023 -17.534 22.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.036 4.036 3 H 0.089 0.911 4 C -0.135 4.135 5 C -0.030 4.030 6 C -0.563 4.563 7 H 0.048 0.952 8 C -0.192 4.192 9 N -0.596 5.596 10 Si 0.774 3.226 11 H -0.198 1.198 12 H -0.176 1.176 13 H -0.209 1.209 14 N -0.242 5.242 15 C -0.129 4.129 16 C 0.044 3.956 17 H 0.109 0.891 18 O -0.390 6.390 19 C -0.155 4.155 20 C -0.053 4.053 21 H 0.097 0.903 22 C -0.198 4.198 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.019 0.981 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.240 0.760 34 H 0.081 0.919 35 H 0.120 0.880 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.961 4.268 -17.119 21.315 hybrid contribution 0.245 0.793 0.090 0.835 sum -11.717 5.061 -17.029 21.281 Atomic orbital electron populations 1.22364 0.95606 1.02533 1.02739 1.21800 0.93810 0.97381 0.90579 0.91115 1.21622 0.96047 1.00342 0.95463 1.19288 0.94453 0.94786 0.94443 1.21632 0.92099 1.35645 1.06895 0.95175 1.25939 1.00667 0.95416 0.97151 1.70070 1.14873 1.45800 1.28828 0.85659 0.77936 0.79971 0.79011 1.19812 1.17644 1.20896 1.65549 1.51961 1.04731 1.01916 1.23928 1.01417 0.96697 0.90894 1.22616 0.84602 0.94904 0.93440 0.89093 1.86563 1.33525 1.41059 1.77835 1.22475 1.02313 0.96903 0.93766 1.22810 0.96983 0.90800 0.94749 0.90260 1.21923 1.00922 0.97656 0.99257 0.91910 0.91595 0.91003 0.91914 0.93667 0.98092 0.96028 0.92709 0.91262 0.90410 0.75969 0.91861 0.87999 0.92957 0.91124 0.94460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.05 7.92 71.98 0.57 -3.48 16 2 C 0.07 2.28 2.35 44.92 0.11 2.38 16 3 H 0.07 2.23 8.05 -2.39 -0.02 2.21 16 4 C -0.10 -3.95 4.34 30.60 0.13 -3.81 16 5 C 0.01 0.39 3.88 29.85 0.12 0.51 16 6 C -0.52 -31.98 9.66 25.60 0.25 -31.73 16 7 H 0.03 1.99 7.99 -2.91 -0.02 1.97 16 8 C 0.00 0.26 5.47 84.66 0.46 0.73 16 9 N -0.95 -62.54 13.96 21.45 0.30 -62.24 16 10 Si 0.95 48.16 27.47 68.60 1.88 50.04 16 11 H -0.27 -13.55 7.11 99.48 0.71 -12.84 16 12 H -0.25 -12.19 6.54 99.48 0.65 -11.53 16 13 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16 14 N -0.52 -15.79 4.33 -831.72 -3.60 -19.39 16 15 C 0.00 -0.03 6.05 86.45 0.52 0.49 16 16 C 0.10 2.12 4.42 31.49 0.14 2.26 16 17 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 18 O -0.58 -13.92 13.26 -148.98 -1.98 -15.90 16 19 C -0.12 -2.66 6.32 31.49 0.20 -2.46 16 20 C 0.05 1.45 2.50 45.06 0.11 1.56 16 21 H 0.08 1.80 5.29 -2.39 -0.01 1.79 16 22 C -0.14 -4.46 8.33 71.98 0.60 -3.86 16 23 H 0.06 1.46 6.48 -2.39 -0.02 1.44 16 24 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.07 1.35 6.45 -2.39 -0.02 1.33 16 26 H 0.06 2.57 4.59 -2.39 -0.01 2.56 16 27 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.00 0.04 7.20 -2.39 -0.02 0.02 16 29 H 0.02 1.11 6.75 -2.39 -0.02 1.10 16 30 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 31 H 0.07 1.26 6.34 -2.39 -0.02 1.25 16 32 H 0.08 1.82 8.08 -2.38 -0.02 1.80 16 33 H 0.39 5.79 9.12 -74.06 -0.68 5.11 16 34 H 0.06 1.74 7.70 -2.38 -0.02 1.72 16 35 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.05 1.76 5.65 -2.39 -0.01 1.75 16 37 H 0.07 1.87 8.07 -2.38 -0.02 1.85 16 38 H 0.04 1.46 7.81 -2.39 -0.02 1.44 16 Total: -1.00 -73.62 287.47 0.12 -73.50 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.31 Total: 11.40 kcal Atomic # 6 Polarization: -40.63 SS G_CDS: 3.21 Total: -37.42 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -3.30 Total: -81.63 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -1.98 Total: -15.90 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 1.88 Total: 50.04 kcal Total: -73.62 0.12 -73.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491890.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.272 kcal (2) G-P(sol) polarization free energy of solvation -73.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds