Wall clock time and date at job start Sun Mar 29 2020 22:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46874 * 2 1 4 4 C 1.53003 * 109.47376 * 239.99324 * 2 1 3 5 5 C 1.52993 * 109.46760 * 174.73288 * 4 2 1 6 6 C 1.50711 * 109.46866 * 175.22014 * 5 4 2 7 7 H 1.07998 * 119.99993 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99647 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99499 * 180.02562 * 8 6 5 10 10 Si 1.86793 * 120.00377 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47449 * 90.00200 * 10 8 6 12 12 H 1.48504 * 109.47168 * 210.00128 * 10 8 6 13 13 H 1.48499 * 109.47065 * 330.00180 * 10 8 6 14 14 N 1.46904 * 109.46756 * 119.99533 * 2 1 3 15 15 C 1.47906 * 111.00154 * 63.15550 * 14 2 1 16 16 C 1.53994 * 107.05618 * 214.15747 * 15 14 2 17 17 H 1.08997 * 110.30427 * 242.30708 * 16 15 14 18 18 O 1.42902 * 110.30588 * 120.24328 * 16 15 14 19 19 C 1.54596 * 105.14265 * 1.22455 * 16 15 14 20 20 C 1.48538 * 110.99630 * 305.76022 * 14 2 1 21 21 H 1.08995 * 110.67086 * 41.29025 * 20 14 2 22 22 C 1.52998 * 110.66551 * 278.15026 * 20 14 2 23 23 H 1.09000 * 109.46908 * 66.70894 * 1 2 3 24 24 H 1.09004 * 109.47121 * 186.70277 * 1 2 3 25 25 H 1.08996 * 109.47140 * 306.70931 * 1 2 3 26 26 H 1.09002 * 109.47010 * 294.73688 * 4 2 1 27 27 H 1.09003 * 109.46556 * 54.73335 * 4 2 1 28 28 H 1.09001 * 109.47560 * 295.21909 * 5 4 2 29 29 H 1.09004 * 109.47310 * 55.22186 * 5 4 2 30 30 H 0.96994 * 119.99964 * 179.97438 * 9 8 6 31 31 H 1.09003 * 109.91264 * 333.50592 * 15 14 2 32 32 H 1.09001 * 109.91380 * 94.60097 * 15 14 2 33 33 H 0.96694 * 114.00383 * 61.44965 * 18 16 15 34 34 H 1.08994 * 110.72633 * 140.31710 * 19 16 15 35 35 H 1.09006 * 110.72297 * 263.42470 * 19 16 15 36 36 H 1.09010 * 109.46771 * 65.11235 * 22 20 14 37 37 H 1.09000 * 109.46862 * 185.10507 * 22 20 14 38 38 H 1.08996 * 109.47542 * 305.11591 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 3.5643 -0.6077 -1.3170 6 6 4.0770 -1.4159 -2.4811 7 1 3.3849 -1.9569 -3.1094 8 6 5.4297 -1.4655 -2.7434 9 7 5.8770 -2.1704 -3.7596 10 14 6.6268 -0.5304 -1.6563 11 1 7.0642 -1.4027 -0.5369 12 1 7.8089 -0.1233 -2.4577 13 1 5.9590 0.6783 -1.1101 14 7 2.0196 -0.6924 1.1995 15 6 1.6084 -2.1132 1.1964 16 6 1.3524 -2.5125 2.6615 17 1 2.0413 -3.3009 2.9646 18 8 0.0007 -2.9449 2.8287 19 6 1.6126 -1.2280 3.4815 20 6 1.4329 -0.1037 2.4306 21 1 0.3764 0.1206 2.2841 22 6 2.2006 1.1524 2.8473 23 1 -0.3633 0.4063 -0.9439 24 1 -0.3633 -1.0207 0.1200 25 1 -0.3633 0.6143 0.8238 26 1 1.7558 -1.7727 -1.2031 27 1 1.6018 -0.2650 -2.1367 28 1 3.8453 0.4373 -1.4484 29 1 3.9985 -0.9871 -0.3920 30 1 6.8286 -2.2051 -3.9443 31 1 0.6952 -2.2341 0.6136 32 1 2.4026 -2.7286 0.7739 33 1 -0.2313 -3.7228 2.3035 34 1 0.8808 -1.1272 4.2830 35 1 2.6257 -1.2257 3.8836 36 1 2.0769 1.9230 2.0862 37 1 1.8130 1.5161 3.7989 38 1 3.2587 0.9132 2.9534 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491891.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:23 Heat of formation + Delta-G solvation = -55.932699 kcal Electronic energy + Delta-G solvation = -16806.639915 eV Core-core repulsion = 14262.645285 eV Total energy + Delta-G solvation = -2543.994631 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.80845 -36.49531 -34.30884 -32.55512 -30.59540 -30.12704 -28.21659 -25.45528 -25.35101 -22.13498 -20.91336 -20.00499 -18.76678 -17.65905 -16.60397 -15.97737 -14.79293 -14.60159 -14.20207 -14.12655 -13.66959 -13.24760 -12.78343 -12.67394 -12.43614 -12.18349 -11.92906 -11.77336 -11.40468 -11.37202 -11.09689 -10.99126 -10.75097 -10.47522 -10.28157 -9.95772 -9.88343 -9.59751 -9.42350 -9.02828 -8.44515 -7.97719 -5.96338 -3.92804 3.38809 3.45123 3.52352 4.05142 4.35987 4.54421 4.63843 4.80644 5.06716 5.22624 5.39396 5.40415 5.47812 5.52347 5.54628 5.61927 5.74974 5.84054 5.93970 5.96890 6.02785 6.15712 6.18298 6.21407 6.30242 6.45101 6.51767 6.73469 7.04620 7.23313 7.41336 7.50837 7.59862 7.67708 7.91766 8.63310 9.09269 9.67817 11.17416 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029000 B = 0.007495 C = 0.007309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.269017 B = 3734.741646 C = 3829.842715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.069 3.931 3 H 0.080 0.920 4 C -0.096 4.096 5 C -0.007 4.007 6 C -0.518 4.518 7 H 0.067 0.933 8 C 0.064 3.936 9 N -0.909 5.909 10 Si 0.882 3.118 11 H -0.278 1.278 12 H -0.291 1.291 13 H -0.264 1.264 14 N -0.493 5.493 15 C 0.002 3.998 16 C 0.089 3.911 17 H 0.065 0.935 18 O -0.569 6.569 19 C -0.111 4.111 20 C 0.052 3.948 21 H 0.060 0.940 22 C -0.136 4.136 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.010 0.990 29 H 0.026 0.974 30 H 0.261 0.739 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.377 0.623 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.277 2.595 13.897 17.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.040 4.040 3 H 0.098 0.902 4 C -0.133 4.133 5 C -0.045 4.045 6 C -0.556 4.556 7 H 0.085 0.915 8 C -0.136 4.136 9 N -0.549 5.549 10 Si 0.709 3.291 11 H -0.204 1.204 12 H -0.218 1.218 13 H -0.189 1.189 14 N -0.217 5.217 15 C -0.127 4.127 16 C 0.030 3.970 17 H 0.083 0.917 18 O -0.375 6.375 19 C -0.149 4.149 20 C -0.056 4.056 21 H 0.078 0.922 22 C -0.193 4.193 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.028 0.972 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.224 0.776 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.552 3.115 14.196 17.392 hybrid contribution -0.105 -0.159 -0.102 0.216 sum -9.656 2.956 14.094 17.339 Atomic orbital electron populations 1.22506 0.98526 1.01763 1.01655 1.22017 0.91555 0.99012 0.91395 0.90223 1.21572 0.99201 0.98944 0.93618 1.19492 0.91224 0.96472 0.97285 1.21243 0.92806 1.29383 1.12144 0.91456 1.25026 0.98436 0.95094 0.95060 1.69931 1.14194 1.41634 1.29103 0.86740 0.80484 0.81209 0.80619 1.20379 1.21766 1.18898 1.65012 1.54260 1.01149 1.01313 1.23685 1.01106 0.91853 0.96015 1.22720 0.82869 0.96562 0.94832 0.91734 1.86492 1.29295 1.50952 1.70751 1.22554 1.02234 0.92645 0.97436 1.22873 0.97493 0.94767 0.90484 0.92191 1.21662 1.01041 0.96388 1.00231 0.92134 0.92439 0.92983 0.92809 0.92749 0.97214 0.95573 0.92946 0.92284 0.89233 0.77575 0.90560 0.89686 0.92704 0.92748 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.59 8.37 37.16 0.31 -2.28 16 2 C 0.07 1.14 2.40 -67.71 -0.16 0.97 16 3 H 0.08 1.35 7.67 -51.93 -0.40 0.95 16 4 C -0.10 -1.91 4.44 -26.73 -0.12 -2.03 16 5 C -0.01 -0.18 3.99 -27.88 -0.11 -0.29 16 6 C -0.52 -15.07 9.66 -34.43 -0.33 -15.40 16 7 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 8 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 9 N -0.91 -28.63 13.96 55.43 0.77 -27.86 16 10 Si 0.88 22.52 27.47 -169.99 -4.67 17.85 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 13 H -0.26 -6.55 6.54 56.52 0.37 -6.18 16 14 N -0.49 -7.87 4.43 -214.71 -0.95 -8.82 16 15 C 0.00 0.02 4.86 -2.75 -0.01 0.01 16 16 C 0.09 1.13 4.35 -25.37 -0.11 1.02 16 17 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 18 O -0.57 -6.82 13.26 -35.23 -0.47 -7.29 16 19 C -0.11 -1.36 6.24 -24.87 -0.16 -1.52 16 20 C 0.05 0.70 2.71 -65.78 -0.18 0.52 16 21 H 0.06 0.81 5.59 -51.93 -0.29 0.52 16 22 C -0.14 -1.66 9.46 37.16 0.35 -1.31 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.06 0.80 5.97 -51.93 -0.31 0.49 16 25 H 0.05 0.67 6.35 -51.93 -0.33 0.34 16 26 H 0.05 1.08 6.67 -51.93 -0.35 0.73 16 27 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.01 0.24 7.20 -51.93 -0.37 -0.13 16 29 H 0.03 0.65 7.06 -51.93 -0.37 0.28 16 30 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 31 H 0.06 0.86 5.12 -51.93 -0.27 0.59 16 32 H 0.09 1.48 8.10 -51.93 -0.42 1.06 16 33 H 0.38 3.10 9.11 45.56 0.41 3.51 16 34 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 35 H 0.08 1.00 8.06 -51.93 -0.42 0.58 16 36 H 0.05 0.69 7.69 -51.92 -0.40 0.29 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 291.47 15.07 4.39 4.39 Total: -1.00 -32.13 291.47 -7.16 -39.29 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.62 Total: 0.94 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: -0.62 Total: -18.50 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: -0.18 Total: -36.68 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.47 Total: -7.29 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.85 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.13 -7.16 -39.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491891.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.643 kcal (2) G-P(sol) polarization free energy of solvation -32.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds