Wall clock time and date at job start Sun Mar 29 2020 22:14:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08998 * 109.46874 * 2 1
4 4 C 1.53003 * 109.47376 * 239.99324 * 2 1 3
5 5 C 1.52993 * 109.46760 * 174.73288 * 4 2 1
6 6 C 1.50711 * 109.46866 * 175.22014 * 5 4 2
7 7 H 1.07998 * 119.99993 * 359.97438 * 6 5 4
8 8 C 1.37877 * 119.99647 * 180.02562 * 6 5 4
9 9 N 1.31517 * 119.99499 * 180.02562 * 8 6 5
10 10 Si 1.86793 * 120.00377 * 359.97438 * 8 6 5
11 11 H 1.48501 * 109.47449 * 90.00200 * 10 8 6
12 12 H 1.48504 * 109.47168 * 210.00128 * 10 8 6
13 13 H 1.48499 * 109.47065 * 330.00180 * 10 8 6
14 14 N 1.46904 * 109.46756 * 119.99533 * 2 1 3
15 15 C 1.47906 * 111.00154 * 63.15550 * 14 2 1
16 16 C 1.53994 * 107.05618 * 214.15747 * 15 14 2
17 17 H 1.08997 * 110.30427 * 242.30708 * 16 15 14
18 18 O 1.42902 * 110.30588 * 120.24328 * 16 15 14
19 19 C 1.54596 * 105.14265 * 1.22455 * 16 15 14
20 20 C 1.48538 * 110.99630 * 305.76022 * 14 2 1
21 21 H 1.08995 * 110.67086 * 41.29025 * 20 14 2
22 22 C 1.52998 * 110.66551 * 278.15026 * 20 14 2
23 23 H 1.09000 * 109.46908 * 66.70894 * 1 2 3
24 24 H 1.09004 * 109.47121 * 186.70277 * 1 2 3
25 25 H 1.08996 * 109.47140 * 306.70931 * 1 2 3
26 26 H 1.09002 * 109.47010 * 294.73688 * 4 2 1
27 27 H 1.09003 * 109.46556 * 54.73335 * 4 2 1
28 28 H 1.09001 * 109.47560 * 295.21909 * 5 4 2
29 29 H 1.09004 * 109.47310 * 55.22186 * 5 4 2
30 30 H 0.96994 * 119.99964 * 179.97438 * 9 8 6
31 31 H 1.09003 * 109.91264 * 333.50592 * 15 14 2
32 32 H 1.09001 * 109.91380 * 94.60097 * 15 14 2
33 33 H 0.96694 * 114.00383 * 61.44965 * 18 16 15
34 34 H 1.08994 * 110.72633 * 140.31710 * 19 16 15
35 35 H 1.09006 * 110.72297 * 263.42470 * 19 16 15
36 36 H 1.09010 * 109.46771 * 65.11235 * 22 20 14
37 37 H 1.09000 * 109.46862 * 185.10507 * 22 20 14
38 38 H 1.08996 * 109.47542 * 305.11591 * 22 20 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0401 -0.7214 -1.2492
5 6 3.5643 -0.6077 -1.3170
6 6 4.0770 -1.4159 -2.4811
7 1 3.3849 -1.9569 -3.1094
8 6 5.4297 -1.4655 -2.7434
9 7 5.8770 -2.1704 -3.7596
10 14 6.6268 -0.5304 -1.6563
11 1 7.0642 -1.4027 -0.5369
12 1 7.8089 -0.1233 -2.4577
13 1 5.9590 0.6783 -1.1101
14 7 2.0196 -0.6924 1.1995
15 6 1.6084 -2.1132 1.1964
16 6 1.3524 -2.5125 2.6615
17 1 2.0413 -3.3009 2.9646
18 8 0.0007 -2.9449 2.8287
19 6 1.6126 -1.2280 3.4815
20 6 1.4329 -0.1037 2.4306
21 1 0.3764 0.1206 2.2841
22 6 2.2006 1.1524 2.8473
23 1 -0.3633 0.4063 -0.9439
24 1 -0.3633 -1.0207 0.1200
25 1 -0.3633 0.6143 0.8238
26 1 1.7558 -1.7727 -1.2031
27 1 1.6018 -0.2650 -2.1367
28 1 3.8453 0.4373 -1.4484
29 1 3.9985 -0.9871 -0.3920
30 1 6.8286 -2.2051 -3.9443
31 1 0.6952 -2.2341 0.6136
32 1 2.4026 -2.7286 0.7739
33 1 -0.2313 -3.7228 2.3035
34 1 0.8808 -1.1272 4.2830
35 1 2.6257 -1.2257 3.8836
36 1 2.0769 1.9230 2.0862
37 1 1.8130 1.5161 3.7989
38 1 3.2587 0.9132 2.9534
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001172491891.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:14:23
Heat of formation + Delta-G solvation = -55.932699 kcal
Electronic energy + Delta-G solvation = -16806.639915 eV
Core-core repulsion = 14262.645285 eV
Total energy + Delta-G solvation = -2543.994631 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-39.80845 -36.49531 -34.30884 -32.55512 -30.59540 -30.12704 -28.21659 -25.45528
-25.35101 -22.13498 -20.91336 -20.00499 -18.76678 -17.65905 -16.60397 -15.97737
-14.79293 -14.60159 -14.20207 -14.12655 -13.66959 -13.24760 -12.78343 -12.67394
-12.43614 -12.18349 -11.92906 -11.77336 -11.40468 -11.37202 -11.09689 -10.99126
-10.75097 -10.47522 -10.28157 -9.95772 -9.88343 -9.59751 -9.42350 -9.02828
-8.44515 -7.97719 -5.96338 -3.92804 3.38809 3.45123 3.52352 4.05142
4.35987 4.54421 4.63843 4.80644 5.06716 5.22624 5.39396 5.40415
5.47812 5.52347 5.54628 5.61927 5.74974 5.84054 5.93970 5.96890
6.02785 6.15712 6.18298 6.21407 6.30242 6.45101 6.51767 6.73469
7.04620 7.23313 7.41336 7.50837 7.59862 7.67708 7.91766 8.63310
9.09269 9.67817 11.17416
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.029000 B = 0.007495 C = 0.007309
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 965.269017 B = 3734.741646 C = 3829.842715
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C 0.069 3.931
3 H 0.080 0.920
4 C -0.096 4.096
5 C -0.007 4.007
6 C -0.518 4.518
7 H 0.067 0.933
8 C 0.064 3.936
9 N -0.909 5.909
10 Si 0.882 3.118
11 H -0.278 1.278
12 H -0.291 1.291
13 H -0.264 1.264
14 N -0.493 5.493
15 C 0.002 3.998
16 C 0.089 3.911
17 H 0.065 0.935
18 O -0.569 6.569
19 C -0.111 4.111
20 C 0.052 3.948
21 H 0.060 0.940
22 C -0.136 4.136
23 H 0.060 0.940
24 H 0.057 0.943
25 H 0.051 0.949
26 H 0.053 0.947
27 H 0.054 0.946
28 H 0.010 0.990
29 H 0.026 0.974
30 H 0.261 0.739
31 H 0.059 0.941
32 H 0.089 0.911
33 H 0.377 0.623
34 H 0.076 0.924
35 H 0.085 0.915
36 H 0.054 0.946
37 H 0.054 0.946
38 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.277 2.595 13.897 17.479
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.245 4.245
2 C -0.040 4.040
3 H 0.098 0.902
4 C -0.133 4.133
5 C -0.045 4.045
6 C -0.556 4.556
7 H 0.085 0.915
8 C -0.136 4.136
9 N -0.549 5.549
10 Si 0.709 3.291
11 H -0.204 1.204
12 H -0.218 1.218
13 H -0.189 1.189
14 N -0.217 5.217
15 C -0.127 4.127
16 C 0.030 3.970
17 H 0.083 0.917
18 O -0.375 6.375
19 C -0.149 4.149
20 C -0.056 4.056
21 H 0.078 0.922
22 C -0.193 4.193
23 H 0.079 0.921
24 H 0.076 0.924
25 H 0.070 0.930
26 H 0.072 0.928
27 H 0.073 0.927
28 H 0.028 0.972
29 H 0.044 0.956
30 H 0.071 0.929
31 H 0.077 0.923
32 H 0.108 0.892
33 H 0.224 0.776
34 H 0.094 0.906
35 H 0.103 0.897
36 H 0.073 0.927
37 H 0.073 0.927
38 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -9.552 3.115 14.196 17.392
hybrid contribution -0.105 -0.159 -0.102 0.216
sum -9.656 2.956 14.094 17.339
Atomic orbital electron populations
1.22506 0.98526 1.01763 1.01655 1.22017 0.91555 0.99012 0.91395
0.90223 1.21572 0.99201 0.98944 0.93618 1.19492 0.91224 0.96472
0.97285 1.21243 0.92806 1.29383 1.12144 0.91456 1.25026 0.98436
0.95094 0.95060 1.69931 1.14194 1.41634 1.29103 0.86740 0.80484
0.81209 0.80619 1.20379 1.21766 1.18898 1.65012 1.54260 1.01149
1.01313 1.23685 1.01106 0.91853 0.96015 1.22720 0.82869 0.96562
0.94832 0.91734 1.86492 1.29295 1.50952 1.70751 1.22554 1.02234
0.92645 0.97436 1.22873 0.97493 0.94767 0.90484 0.92191 1.21662
1.01041 0.96388 1.00231 0.92134 0.92439 0.92983 0.92809 0.92749
0.97214 0.95573 0.92946 0.92284 0.89233 0.77575 0.90560 0.89686
0.92704 0.92748 0.91701
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -2.59 8.37 37.16 0.31 -2.28 16
2 C 0.07 1.14 2.40 -67.71 -0.16 0.97 16
3 H 0.08 1.35 7.67 -51.93 -0.40 0.95 16
4 C -0.10 -1.91 4.44 -26.73 -0.12 -2.03 16
5 C -0.01 -0.18 3.99 -27.88 -0.11 -0.29 16
6 C -0.52 -15.07 9.66 -34.43 -0.33 -15.40 16
7 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16
8 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16
9 N -0.91 -28.63 13.96 55.43 0.77 -27.86 16
10 Si 0.88 22.52 27.47 -169.99 -4.67 17.85 16
11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16
12 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16
13 H -0.26 -6.55 6.54 56.52 0.37 -6.18 16
14 N -0.49 -7.87 4.43 -214.71 -0.95 -8.82 16
15 C 0.00 0.02 4.86 -2.75 -0.01 0.01 16
16 C 0.09 1.13 4.35 -25.37 -0.11 1.02 16
17 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16
18 O -0.57 -6.82 13.26 -35.23 -0.47 -7.29 16
19 C -0.11 -1.36 6.24 -24.87 -0.16 -1.52 16
20 C 0.05 0.70 2.71 -65.78 -0.18 0.52 16
21 H 0.06 0.81 5.59 -51.93 -0.29 0.52 16
22 C -0.14 -1.66 9.46 37.16 0.35 -1.31 16
23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16
24 H 0.06 0.80 5.97 -51.93 -0.31 0.49 16
25 H 0.05 0.67 6.35 -51.93 -0.33 0.34 16
26 H 0.05 1.08 6.67 -51.93 -0.35 0.73 16
27 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16
28 H 0.01 0.24 7.20 -51.93 -0.37 -0.13 16
29 H 0.03 0.65 7.06 -51.93 -0.37 0.28 16
30 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16
31 H 0.06 0.86 5.12 -51.93 -0.27 0.59 16
32 H 0.09 1.48 8.10 -51.93 -0.42 1.06 16
33 H 0.38 3.10 9.11 45.56 0.41 3.51 16
34 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16
35 H 0.08 1.00 8.06 -51.93 -0.42 0.58 16
36 H 0.05 0.69 7.69 -51.92 -0.40 0.29 16
37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
38 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16
LS Contribution 291.47 15.07 4.39 4.39
Total: -1.00 -32.13 291.47 -7.16 -39.29
By element:
Atomic # 1 Polarization: 6.56 SS G_CDS: -5.62 Total: 0.94 kcal
Atomic # 6 Polarization: -17.88 SS G_CDS: -0.62 Total: -18.50 kcal
Atomic # 7 Polarization: -36.50 SS G_CDS: -0.18 Total: -36.68 kcal
Atomic # 8 Polarization: -6.82 SS G_CDS: -0.47 Total: -7.29 kcal
Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.85 kcal
Total LS contribution 4.39 Total: 4.39 kcal
Total: -32.13 -7.16 -39.29 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001172491891.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -16.643 kcal
(2) G-P(sol) polarization free energy of solvation -32.129 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.772 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.290 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.933 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds