Wall clock time and date at job start Sun Mar 29 2020 22:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46874 * 2 1 4 4 C 1.53003 * 109.47376 * 239.99324 * 2 1 3 5 5 C 1.52993 * 109.46760 * 174.73288 * 4 2 1 6 6 C 1.50711 * 109.46866 * 175.22014 * 5 4 2 7 7 H 1.07998 * 119.99993 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99647 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99499 * 180.02562 * 8 6 5 10 10 Si 1.86793 * 120.00377 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47449 * 90.00200 * 10 8 6 12 12 H 1.48504 * 109.47168 * 210.00128 * 10 8 6 13 13 H 1.48499 * 109.47065 * 330.00180 * 10 8 6 14 14 N 1.46904 * 109.46756 * 119.99533 * 2 1 3 15 15 C 1.47906 * 111.00154 * 63.15550 * 14 2 1 16 16 C 1.53994 * 107.05618 * 214.15747 * 15 14 2 17 17 H 1.08997 * 110.30427 * 242.30708 * 16 15 14 18 18 O 1.42902 * 110.30588 * 120.24328 * 16 15 14 19 19 C 1.54596 * 105.14265 * 1.22455 * 16 15 14 20 20 C 1.48538 * 110.99630 * 305.76022 * 14 2 1 21 21 H 1.08995 * 110.67086 * 41.29025 * 20 14 2 22 22 C 1.52998 * 110.66551 * 278.15026 * 20 14 2 23 23 H 1.09000 * 109.46908 * 66.70894 * 1 2 3 24 24 H 1.09004 * 109.47121 * 186.70277 * 1 2 3 25 25 H 1.08996 * 109.47140 * 306.70931 * 1 2 3 26 26 H 1.09002 * 109.47010 * 294.73688 * 4 2 1 27 27 H 1.09003 * 109.46556 * 54.73335 * 4 2 1 28 28 H 1.09001 * 109.47560 * 295.21909 * 5 4 2 29 29 H 1.09004 * 109.47310 * 55.22186 * 5 4 2 30 30 H 0.96994 * 119.99964 * 179.97438 * 9 8 6 31 31 H 1.09003 * 109.91264 * 333.50592 * 15 14 2 32 32 H 1.09001 * 109.91380 * 94.60097 * 15 14 2 33 33 H 0.96694 * 114.00383 * 61.44965 * 18 16 15 34 34 H 1.08994 * 110.72633 * 140.31710 * 19 16 15 35 35 H 1.09006 * 110.72297 * 263.42470 * 19 16 15 36 36 H 1.09010 * 109.46771 * 65.11235 * 22 20 14 37 37 H 1.09000 * 109.46862 * 185.10507 * 22 20 14 38 38 H 1.08996 * 109.47542 * 305.11591 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 3.5643 -0.6077 -1.3170 6 6 4.0770 -1.4159 -2.4811 7 1 3.3849 -1.9569 -3.1094 8 6 5.4297 -1.4655 -2.7434 9 7 5.8770 -2.1704 -3.7596 10 14 6.6268 -0.5304 -1.6563 11 1 7.0642 -1.4027 -0.5369 12 1 7.8089 -0.1233 -2.4577 13 1 5.9590 0.6783 -1.1101 14 7 2.0196 -0.6924 1.1995 15 6 1.6084 -2.1132 1.1964 16 6 1.3524 -2.5125 2.6615 17 1 2.0413 -3.3009 2.9646 18 8 0.0007 -2.9449 2.8287 19 6 1.6126 -1.2280 3.4815 20 6 1.4329 -0.1037 2.4306 21 1 0.3764 0.1206 2.2841 22 6 2.2006 1.1524 2.8473 23 1 -0.3633 0.4063 -0.9439 24 1 -0.3633 -1.0207 0.1200 25 1 -0.3633 0.6143 0.8238 26 1 1.7558 -1.7727 -1.2031 27 1 1.6018 -0.2650 -2.1367 28 1 3.8453 0.4373 -1.4484 29 1 3.9985 -0.9871 -0.3920 30 1 6.8286 -2.2051 -3.9443 31 1 0.6952 -2.2341 0.6136 32 1 2.4026 -2.7286 0.7739 33 1 -0.2313 -3.7228 2.3035 34 1 0.8808 -1.1272 4.2830 35 1 2.6257 -1.2257 3.8836 36 1 2.0769 1.9230 2.0862 37 1 1.8130 1.5161 3.7989 38 1 3.2587 0.9132 2.9534 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491891.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:23 Heat of formation + Delta-G solvation = -79.783295 kcal Electronic energy + Delta-G solvation = -16807.674155 eV Core-core repulsion = 14262.645285 eV Total energy + Delta-G solvation = -2545.028870 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.93521 -37.59652 -35.81079 -34.47063 -31.96753 -31.58630 -29.34086 -27.20489 -26.49704 -23.47839 -22.52210 -21.24987 -20.05826 -18.79851 -18.64377 -17.15658 -16.34852 -15.83021 -15.64373 -15.42295 -14.88528 -14.78668 -14.48125 -14.01917 -13.83491 -13.31808 -13.25390 -13.09125 -12.92485 -12.74108 -12.44278 -12.20142 -12.01555 -11.81731 -11.75683 -11.54127 -11.36168 -11.34442 -11.03985 -10.90667 -10.73059 -9.16746 -8.27753 -6.30079 1.36696 1.37635 1.51543 2.38294 2.98830 3.08713 3.40235 3.60194 3.74864 4.02509 4.10192 4.23227 4.29113 4.40220 4.49380 4.55368 4.65205 4.77962 4.81492 4.87041 4.87718 4.94809 4.98655 5.06443 5.15467 5.22200 5.26529 5.31077 5.47426 5.56186 5.67807 5.72771 6.09280 6.24550 6.32441 6.78188 6.82326 7.34549 8.89282 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029000 B = 0.007495 C = 0.007309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.269017 B = 3734.741646 C = 3829.842715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.076 3.924 3 H 0.078 0.922 4 C -0.089 4.089 5 C 0.003 3.997 6 C -0.529 4.529 7 H 0.028 0.972 8 C 0.003 3.997 9 N -0.954 5.954 10 Si 0.952 3.048 11 H -0.268 1.268 12 H -0.285 1.285 13 H -0.250 1.250 14 N -0.514 5.514 15 C 0.002 3.998 16 C 0.096 3.904 17 H 0.073 0.927 18 O -0.576 6.576 19 C -0.108 4.108 20 C 0.053 3.947 21 H 0.063 0.937 22 C -0.133 4.133 23 H 0.065 0.935 24 H 0.056 0.944 25 H 0.068 0.932 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.008 0.992 29 H 0.025 0.975 30 H 0.265 0.735 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.392 0.608 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.757 3.777 16.227 19.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.033 4.033 3 H 0.096 0.904 4 C -0.127 4.127 5 C -0.035 4.035 6 C -0.567 4.567 7 H 0.046 0.954 8 C -0.193 4.193 9 N -0.596 5.596 10 Si 0.776 3.224 11 H -0.193 1.193 12 H -0.211 1.211 13 H -0.173 1.173 14 N -0.239 5.239 15 C -0.126 4.126 16 C 0.036 3.964 17 H 0.091 0.909 18 O -0.384 6.384 19 C -0.146 4.146 20 C -0.055 4.055 21 H 0.081 0.919 22 C -0.191 4.191 23 H 0.084 0.916 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.026 0.974 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.242 0.758 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.057 4.290 16.529 19.818 hybrid contribution -0.010 -0.603 -0.905 1.087 sum -10.067 3.687 15.624 18.949 Atomic orbital electron populations 1.22391 0.96288 1.02153 1.02645 1.21811 0.93250 0.98190 0.90005 0.90365 1.21436 0.96298 0.99146 0.95772 1.19359 0.94123 0.95085 0.94925 1.21606 0.92583 1.29465 1.13075 0.95358 1.25989 1.00587 0.96132 0.96555 1.70078 1.14897 1.43443 1.31145 0.85627 0.77863 0.80222 0.78711 1.19311 1.21097 1.17326 1.64957 1.55234 1.01714 1.01972 1.23640 1.00108 0.91180 0.97718 1.22625 0.83453 0.97121 0.93153 0.90917 1.86458 1.28799 1.51990 1.71134 1.22572 1.02937 0.91805 0.97281 1.22949 0.97582 0.95482 0.89488 0.91919 1.21661 1.00383 0.95712 1.01306 0.91636 0.92483 0.91332 0.93574 0.93113 0.97368 0.95659 0.92648 0.92246 0.91775 0.75794 0.89403 0.89182 0.93158 0.90380 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.54 8.37 71.98 0.60 -3.94 16 2 C 0.08 2.41 2.40 44.92 0.11 2.51 16 3 H 0.08 2.50 7.67 -2.39 -0.02 2.49 16 4 C -0.09 -3.55 4.44 30.59 0.14 -3.41 16 5 C 0.00 0.12 3.99 29.85 0.12 0.24 16 6 C -0.53 -31.58 9.66 25.60 0.25 -31.33 16 7 H 0.03 1.85 7.99 -2.91 -0.02 1.82 16 8 C 0.00 0.21 5.47 84.65 0.46 0.67 16 9 N -0.95 -61.45 13.96 21.45 0.30 -61.15 16 10 Si 0.95 46.33 27.47 68.60 1.88 48.22 16 11 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 13 H -0.25 -11.46 6.54 99.48 0.65 -10.81 16 14 N -0.51 -15.62 4.43 -833.21 -3.69 -19.31 16 15 C 0.00 0.05 4.86 86.45 0.42 0.47 16 16 C 0.10 2.22 4.35 31.47 0.14 2.36 16 17 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 18 O -0.58 -12.40 13.26 -148.98 -1.98 -14.37 16 19 C -0.11 -2.36 6.24 31.80 0.20 -2.16 16 20 C 0.05 1.27 2.71 45.26 0.12 1.40 16 21 H 0.06 1.50 5.59 -2.39 -0.01 1.49 16 22 C -0.13 -2.90 9.46 71.98 0.68 -2.22 16 23 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.06 1.48 5.97 -2.38 -0.01 1.46 16 25 H 0.07 1.56 6.35 -2.39 -0.02 1.54 16 26 H 0.05 1.89 6.67 -2.39 -0.02 1.87 16 27 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.01 0.39 7.20 -2.39 -0.02 0.38 16 29 H 0.03 1.23 7.06 -2.38 -0.02 1.22 16 30 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 31 H 0.06 1.67 5.12 -2.39 -0.01 1.66 16 32 H 0.06 2.13 8.10 -2.39 -0.02 2.11 16 33 H 0.39 5.63 9.11 -74.06 -0.67 4.96 16 34 H 0.09 1.74 8.08 -2.39 -0.02 1.72 16 35 H 0.09 1.87 8.06 -2.38 -0.02 1.85 16 36 H 0.05 1.13 7.69 -2.38 -0.02 1.11 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -69.02 291.47 0.05 -68.96 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.30 Total: 13.06 kcal Atomic # 6 Polarization: -38.64 SS G_CDS: 3.23 Total: -35.41 kcal Atomic # 7 Polarization: -77.07 SS G_CDS: -3.39 Total: -80.46 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -1.98 Total: -14.37 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.88 Total: 48.22 kcal Total: -69.02 0.05 -68.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491891.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.820 kcal (2) G-P(sol) polarization free energy of solvation -69.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds