Wall clock time and date at job start Sun Mar 29 2020 22:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47189 * 2 1 4 4 N 1.46901 * 109.47221 * 182.12090 * 3 2 1 5 5 C 1.46903 * 111.00200 * 63.05037 * 4 3 2 6 6 C 1.50705 * 109.46642 * 66.05334 * 5 4 3 7 7 H 1.07999 * 119.99989 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99811 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00360 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00084 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47418 * 89.99752 * 10 8 6 12 12 H 1.48502 * 109.46945 * 209.99938 * 10 8 6 13 13 H 1.48502 * 109.46952 * 329.99534 * 10 8 6 14 14 C 1.46902 * 110.99713 * 299.10260 * 4 3 2 15 15 C 1.53002 * 109.47086 * 291.80476 * 14 4 3 16 16 H 1.08996 * 110.45723 * 51.86095 * 15 14 4 17 17 C 1.54515 * 110.51377 * 174.47096 * 15 14 4 18 18 C 1.54481 * 104.06303 * 118.64154 * 17 15 14 19 19 O 1.44425 * 104.80213 * 23.97904 * 18 17 15 20 20 C 1.44644 * 105.37061 * 319.56378 * 19 18 17 21 21 H 1.08996 * 109.47385 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46797 * 300.00093 * 1 2 3 23 23 H 1.08997 * 109.47514 * 59.99441 * 1 2 3 24 24 H 1.09005 * 109.46797 * 239.99907 * 2 1 3 25 25 H 1.08997 * 109.47514 * 120.00559 * 2 1 3 26 26 H 1.09004 * 109.47497 * 302.11283 * 3 2 1 27 27 H 1.08997 * 109.47422 * 62.11991 * 3 2 1 28 28 H 1.09003 * 109.47245 * 186.04754 * 5 4 3 29 29 H 1.08989 * 109.47451 * 306.04943 * 5 4 3 30 30 H 0.96996 * 120.00340 * 179.97438 * 9 8 6 31 31 H 1.08998 * 109.47322 * 51.80170 * 14 4 3 32 32 H 1.09004 * 109.47205 * 171.80601 * 14 4 3 33 33 H 1.08999 * 110.50802 * 237.29095 * 17 15 14 34 34 H 1.09002 * 110.50639 * 359.97438 * 17 15 14 35 35 H 1.09000 * 110.36675 * 142.81127 * 18 17 15 36 36 H 1.08999 * 110.37170 * 265.03548 * 18 17 15 37 37 H 1.08998 * 110.34119 * 281.59033 * 20 19 18 38 38 H 1.08998 * 110.50704 * 159.18551 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5081 1.4428 -0.0513 5 6 3.9915 0.8365 -1.2990 6 6 3.5919 1.7024 -2.4659 7 1 3.0343 2.6119 -2.2975 8 6 3.9382 1.3336 -3.7484 9 7 3.5892 2.0889 -4.7668 10 14 4.9033 -0.2391 -4.0396 11 1 3.9604 -1.3695 -4.2352 12 1 5.7484 -0.0841 -5.2509 13 1 5.7685 -0.5137 -2.8643 14 6 4.0758 0.7611 1.1197 15 6 3.8018 1.5910 2.3755 16 1 2.7423 1.8371 2.4458 17 6 4.2662 0.8315 3.6384 18 6 5.3499 1.7470 4.2497 19 8 5.0405 3.0675 3.7532 20 6 4.6572 2.8774 2.3715 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 1.6461 1.9672 -0.8704 27 1 1.7080 1.9452 0.9083 28 1 5.0777 0.7516 -1.2647 29 1 3.5531 -0.1546 -1.4150 30 1 3.8331 1.8296 -5.6691 31 1 3.6164 -0.2216 1.2262 32 1 5.1517 0.6468 0.9873 33 1 3.4368 0.7042 4.3341 34 1 4.6906 -0.1354 3.3680 35 1 5.2930 1.7279 5.3381 36 1 6.3405 1.4371 3.9168 37 1 5.5412 2.7433 1.7480 38 1 4.0679 3.7238 2.0188 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202501613.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:41 Heat of formation + Delta-G solvation = -51.984563 kcal Electronic energy + Delta-G solvation = -16591.410499 eV Core-core repulsion = 14047.587072 eV Total energy + Delta-G solvation = -2543.823426 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.41948 -37.40405 -33.00150 -32.78287 -31.48264 -29.31563 -27.51395 -25.87427 -23.78237 -22.46451 -22.04583 -20.26005 -19.01701 -16.84230 -16.34072 -15.56402 -15.24077 -14.87912 -14.60252 -14.28173 -13.79834 -13.56268 -13.11180 -12.64379 -12.38656 -11.98709 -11.74733 -11.43496 -11.34765 -11.24257 -11.17088 -10.84631 -10.71366 -10.65523 -10.50070 -10.15363 -9.81031 -9.77563 -9.58137 -9.25794 -8.57884 -7.32106 -6.05712 -4.02464 3.26016 3.34380 3.35640 4.14221 4.40651 4.55712 4.86477 4.96057 5.16106 5.21630 5.28447 5.42451 5.45200 5.46233 5.71007 5.74338 5.77818 5.81620 5.92959 5.96456 6.03166 6.04571 6.21187 6.29422 6.30809 6.43434 6.46836 6.53657 6.82047 6.96008 6.96396 7.03815 7.60144 7.89920 8.04913 8.65536 9.03264 9.56248 11.07504 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025323 B = 0.007662 C = 0.006707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.446601 B = 3653.325438 C = 4173.454294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.163 4.163 3 C 0.063 3.937 4 N -0.525 5.525 5 C 0.159 3.841 6 C -0.505 4.505 7 H 0.081 0.919 8 C 0.068 3.932 9 N -0.900 5.900 10 Si 0.873 3.127 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.268 1.268 14 C 0.056 3.944 15 C -0.115 4.115 16 H 0.083 0.917 17 C -0.152 4.152 18 C 0.046 3.954 19 O -0.386 6.386 20 C 0.061 3.939 21 H 0.044 0.956 22 H 0.047 0.953 23 H 0.057 0.943 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.087 0.913 27 H 0.056 0.944 28 H 0.025 0.975 29 H -0.011 1.011 30 H 0.263 0.737 31 H 0.033 0.967 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.493 -4.548 14.685 15.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.202 4.202 3 C -0.066 4.066 4 N -0.247 5.247 5 C 0.033 3.967 6 C -0.544 4.544 7 H 0.099 0.901 8 C -0.133 4.133 9 N -0.540 5.540 10 Si 0.700 3.300 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.193 1.193 14 C -0.073 4.073 15 C -0.134 4.134 16 H 0.101 0.899 17 C -0.190 4.190 18 C -0.031 4.031 19 O -0.305 6.305 20 C -0.015 4.015 21 H 0.064 0.936 22 H 0.066 0.934 23 H 0.076 0.924 24 H 0.089 0.911 25 H 0.070 0.930 26 H 0.105 0.895 27 H 0.074 0.926 28 H 0.043 0.957 29 H 0.007 0.993 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.287 -3.827 14.592 15.088 hybrid contribution 0.229 -2.014 -0.521 2.093 sum -0.058 -5.841 14.071 15.235 Atomic orbital electron populations 1.21648 0.96187 1.00734 1.01543 1.22165 0.95955 1.00438 1.01682 1.22128 0.88088 0.94484 1.01855 1.62182 1.06758 1.53861 1.01903 1.20229 0.95238 0.93572 0.87705 1.21016 1.35601 1.09018 0.88740 0.90140 1.24886 0.95714 0.96601 0.96105 1.69887 1.47013 1.38124 0.98933 0.86903 0.80713 0.84353 0.78009 1.20421 1.21168 1.19259 1.22202 0.99697 0.94859 0.90532 1.22530 1.01162 0.95750 0.93936 0.89916 1.22988 0.99175 0.99502 0.97354 1.23331 0.97418 0.83246 0.99097 1.89111 1.88116 1.26893 1.26402 1.23454 0.98052 0.97900 0.82094 0.93642 0.93382 0.92420 0.91132 0.93036 0.89455 0.92597 0.95691 0.99307 0.92702 0.94938 0.91493 0.91023 0.90672 0.89742 0.92599 0.91745 0.88750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.16 -2.72 5.28 -26.73 -0.14 -2.86 16 3 C 0.06 1.15 4.98 -3.83 -0.02 1.13 16 4 N -0.52 -10.42 4.58 -236.07 -1.08 -11.50 16 5 C 0.16 3.73 3.60 -4.97 -0.02 3.71 16 6 C -0.51 -14.05 9.03 -34.44 -0.31 -14.36 16 7 H 0.08 2.44 7.36 -52.49 -0.39 2.06 16 8 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 9 N -0.90 -27.37 13.96 55.43 0.77 -26.59 16 10 Si 0.87 21.34 27.47 -169.99 -4.67 16.67 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 14 C 0.06 0.90 3.92 -3.82 -0.01 0.89 16 15 C -0.11 -1.61 3.11 -89.05 -0.28 -1.88 16 16 H 0.08 1.18 6.37 -51.93 -0.33 0.85 16 17 C -0.15 -1.74 6.74 -25.16 -0.17 -1.91 16 18 C 0.05 0.54 7.64 37.93 0.29 0.83 16 19 O -0.39 -5.78 11.65 -35.23 -0.41 -6.19 16 20 C 0.06 0.92 7.11 37.94 0.27 1.19 16 21 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.07 1.35 6.25 -51.93 -0.32 1.03 16 25 H 0.05 0.79 6.36 -51.93 -0.33 0.46 16 26 H 0.09 1.83 6.78 -51.93 -0.35 1.48 16 27 H 0.06 0.91 6.39 -51.93 -0.33 0.58 16 28 H 0.03 0.61 6.96 -51.93 -0.36 0.24 16 29 H -0.01 -0.25 5.49 -51.94 -0.28 -0.53 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.03 0.51 5.98 -51.93 -0.31 0.20 16 32 H 0.07 1.10 7.70 -51.93 -0.40 0.70 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.79 7.73 -51.93 -0.40 0.39 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 1.01 7.74 -51.93 -0.40 0.61 16 38 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 291.58 15.07 4.39 4.39 Total: -1.00 -29.70 291.58 -7.46 -37.16 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -6.34 Total: -0.85 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -0.12 Total: -13.08 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: -0.31 Total: -38.10 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -0.41 Total: -6.19 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.70 -7.46 -37.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202501613.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.824 kcal (2) G-P(sol) polarization free energy of solvation -29.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds