Wall clock time and date at job start Sun Mar 29 2020 22:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47189 * 2 1 4 4 N 1.46901 * 109.47221 * 182.12090 * 3 2 1 5 5 C 1.46903 * 111.00200 * 63.05037 * 4 3 2 6 6 C 1.50705 * 109.46642 * 66.05334 * 5 4 3 7 7 H 1.07999 * 119.99989 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99811 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00360 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00084 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47418 * 89.99752 * 10 8 6 12 12 H 1.48502 * 109.46945 * 209.99938 * 10 8 6 13 13 H 1.48502 * 109.46952 * 329.99534 * 10 8 6 14 14 C 1.46902 * 110.99713 * 299.10260 * 4 3 2 15 15 C 1.53002 * 109.47086 * 291.80476 * 14 4 3 16 16 H 1.08996 * 110.45723 * 51.86095 * 15 14 4 17 17 C 1.54515 * 110.51377 * 174.47096 * 15 14 4 18 18 C 1.54481 * 104.06303 * 118.64154 * 17 15 14 19 19 O 1.44425 * 104.80213 * 23.97904 * 18 17 15 20 20 C 1.44644 * 105.37061 * 319.56378 * 19 18 17 21 21 H 1.08996 * 109.47385 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46797 * 300.00093 * 1 2 3 23 23 H 1.08997 * 109.47514 * 59.99441 * 1 2 3 24 24 H 1.09005 * 109.46797 * 239.99907 * 2 1 3 25 25 H 1.08997 * 109.47514 * 120.00559 * 2 1 3 26 26 H 1.09004 * 109.47497 * 302.11283 * 3 2 1 27 27 H 1.08997 * 109.47422 * 62.11991 * 3 2 1 28 28 H 1.09003 * 109.47245 * 186.04754 * 5 4 3 29 29 H 1.08989 * 109.47451 * 306.04943 * 5 4 3 30 30 H 0.96996 * 120.00340 * 179.97438 * 9 8 6 31 31 H 1.08998 * 109.47322 * 51.80170 * 14 4 3 32 32 H 1.09004 * 109.47205 * 171.80601 * 14 4 3 33 33 H 1.08999 * 110.50802 * 237.29095 * 17 15 14 34 34 H 1.09002 * 110.50639 * 359.97438 * 17 15 14 35 35 H 1.09000 * 110.36675 * 142.81127 * 18 17 15 36 36 H 1.08999 * 110.37170 * 265.03548 * 18 17 15 37 37 H 1.08998 * 110.34119 * 281.59033 * 20 19 18 38 38 H 1.08998 * 110.50704 * 159.18551 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5081 1.4428 -0.0513 5 6 3.9915 0.8365 -1.2990 6 6 3.5919 1.7024 -2.4659 7 1 3.0343 2.6119 -2.2975 8 6 3.9382 1.3336 -3.7484 9 7 3.5892 2.0889 -4.7668 10 14 4.9033 -0.2391 -4.0396 11 1 3.9604 -1.3695 -4.2352 12 1 5.7484 -0.0841 -5.2509 13 1 5.7685 -0.5137 -2.8643 14 6 4.0758 0.7611 1.1197 15 6 3.8018 1.5910 2.3755 16 1 2.7423 1.8371 2.4458 17 6 4.2662 0.8315 3.6384 18 6 5.3499 1.7470 4.2497 19 8 5.0405 3.0675 3.7532 20 6 4.6572 2.8774 2.3715 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 1.6461 1.9672 -0.8704 27 1 1.7080 1.9452 0.9083 28 1 5.0777 0.7516 -1.2647 29 1 3.5531 -0.1546 -1.4150 30 1 3.8331 1.8296 -5.6691 31 1 3.6164 -0.2216 1.2262 32 1 5.1517 0.6468 0.9873 33 1 3.4368 0.7042 4.3341 34 1 4.6906 -0.1354 3.3680 35 1 5.2930 1.7279 5.3381 36 1 6.3405 1.4371 3.9168 37 1 5.5412 2.7433 1.7480 38 1 4.0679 3.7238 2.0188 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202501613.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:41 Heat of formation + Delta-G solvation = -72.454784 kcal Electronic energy + Delta-G solvation = -16592.298154 eV Core-core repulsion = 14047.587072 eV Total energy + Delta-G solvation = -2544.711082 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.57695 -38.83923 -34.85735 -34.16933 -32.96303 -30.53430 -29.21203 -27.22083 -25.32547 -23.72050 -23.39937 -21.61948 -20.40914 -18.89408 -17.54624 -16.82859 -16.50128 -16.33805 -16.14893 -15.76432 -15.31519 -14.85961 -14.48627 -14.29936 -13.67726 -13.53233 -13.22740 -12.87343 -12.71507 -12.59794 -12.40714 -12.27761 -12.14319 -11.96411 -11.83427 -11.73231 -11.50653 -11.32728 -11.08354 -10.76077 -10.69125 -8.87833 -8.26773 -6.28765 1.32776 1.34972 1.45204 2.34182 3.05953 3.09208 3.24771 3.77017 3.88872 4.04860 4.12359 4.15063 4.25233 4.41925 4.48600 4.56207 4.62074 4.67548 4.72113 4.82530 4.88189 4.92090 5.00785 5.02070 5.04479 5.10880 5.16180 5.24049 5.30541 5.39204 5.48630 5.58566 5.91263 6.03325 6.42359 6.70211 6.77744 7.34331 8.90030 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025323 B = 0.007662 C = 0.006707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.446601 B = 3653.325438 C = 4173.454294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.157 4.157 3 C 0.066 3.934 4 N -0.542 5.542 5 C 0.170 3.830 6 C -0.508 4.508 7 H 0.037 0.963 8 C 0.007 3.993 9 N -0.950 5.950 10 Si 0.943 3.057 11 H -0.268 1.268 12 H -0.283 1.283 13 H -0.249 1.249 14 C 0.059 3.941 15 C -0.109 4.109 16 H 0.083 0.917 17 C -0.143 4.143 18 C 0.039 3.961 19 O -0.405 6.405 20 C 0.061 3.939 21 H 0.062 0.938 22 H 0.068 0.932 23 H 0.041 0.959 24 H 0.042 0.958 25 H 0.073 0.927 26 H 0.047 0.953 27 H 0.080 0.920 28 H 0.023 0.977 29 H -0.005 1.005 30 H 0.265 0.735 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.062 0.938 37 H 0.052 0.948 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.100 -6.801 16.968 18.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.196 4.196 3 C -0.062 4.062 4 N -0.264 5.264 5 C 0.043 3.957 6 C -0.547 4.547 7 H 0.055 0.945 8 C -0.190 4.190 9 N -0.591 5.591 10 Si 0.767 3.233 11 H -0.194 1.194 12 H -0.209 1.209 13 H -0.172 1.172 14 C -0.069 4.069 15 C -0.128 4.128 16 H 0.101 0.899 17 C -0.181 4.181 18 C -0.037 4.037 19 O -0.324 6.324 20 C -0.015 4.015 21 H 0.081 0.919 22 H 0.087 0.913 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.092 0.908 26 H 0.066 0.934 27 H 0.098 0.902 28 H 0.041 0.959 29 H 0.012 0.988 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.102 -6.083 16.910 17.971 hybrid contribution 0.069 -1.205 -1.169 1.681 sum 0.171 -7.289 15.740 17.347 Atomic orbital electron populations 1.21619 0.94351 1.01968 1.01793 1.22077 0.97600 0.98648 1.01230 1.22054 0.87249 0.95727 1.01145 1.62050 1.07838 1.54676 1.01847 1.19951 0.94938 0.92856 0.87948 1.21255 1.34592 1.08101 0.90739 0.94506 1.25811 0.96982 1.00451 0.95742 1.70049 1.48923 1.40555 0.99544 0.85781 0.79421 0.79686 0.78462 1.19369 1.20888 1.17243 1.22254 0.99439 0.95538 0.89643 1.22459 1.00967 0.95223 0.94160 0.89887 1.22969 0.99647 0.99527 0.95968 1.23588 0.97857 0.81768 1.00507 1.89095 1.88273 1.29069 1.25993 1.23350 0.97623 0.98170 0.82376 0.91900 0.91341 0.94022 0.93973 0.90847 0.93422 0.90223 0.95876 0.98769 0.92581 0.93546 0.91625 0.89299 0.89262 0.87419 0.91971 0.92947 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.91 71.98 0.71 -3.00 16 2 C -0.16 -4.96 5.28 30.59 0.16 -4.80 16 3 C 0.07 2.41 4.98 86.30 0.43 2.84 16 4 N -0.54 -21.32 4.58 -900.78 -4.13 -25.45 16 5 C 0.17 7.97 3.60 85.56 0.31 8.28 16 6 C -0.51 -29.23 9.03 25.60 0.23 -29.00 16 7 H 0.04 2.37 7.36 -2.91 -0.02 2.35 16 8 C 0.01 0.41 5.47 84.65 0.46 0.87 16 9 N -0.95 -59.66 13.96 21.45 0.30 -59.36 16 10 Si 0.94 44.01 27.47 68.60 1.88 45.90 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 14 C 0.06 1.79 3.92 86.30 0.34 2.13 16 15 C -0.11 -2.79 3.11 -9.77 -0.03 -2.82 16 16 H 0.08 2.14 6.37 -2.39 -0.02 2.12 16 17 C -0.14 -2.73 6.74 31.61 0.21 -2.52 16 18 C 0.04 0.79 7.64 72.49 0.55 1.34 16 19 O -0.40 -11.44 11.65 -148.98 -1.74 -13.18 16 20 C 0.06 1.79 7.11 72.49 0.52 2.30 16 21 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 22 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 23 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.04 1.57 6.25 -2.38 -0.01 1.56 16 25 H 0.07 2.00 6.36 -2.39 -0.02 1.99 16 26 H 0.05 2.09 6.78 -2.38 -0.02 2.08 16 27 H 0.08 2.49 6.39 -2.39 -0.02 2.48 16 28 H 0.02 1.09 6.96 -2.39 -0.02 1.08 16 29 H -0.01 -0.24 5.49 -2.39 -0.01 -0.25 16 30 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 31 H 0.05 1.30 5.98 -2.39 -0.01 1.28 16 32 H 0.07 2.01 7.70 -2.39 -0.02 1.99 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.09 1.49 7.73 -2.39 -0.02 1.47 16 35 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.05 1.63 7.74 -2.39 -0.02 1.61 16 38 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -65.95 291.58 1.17 -64.77 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 0.96 Total: 11.69 kcal Atomic # 6 Polarization: -28.27 SS G_CDS: 3.90 Total: -24.37 kcal Atomic # 7 Polarization: -80.98 SS G_CDS: -3.83 Total: -84.81 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -1.74 Total: -13.18 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.88 Total: 45.90 kcal Total: -65.95 1.17 -64.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202501613.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.682 kcal (2) G-P(sol) polarization free energy of solvation -65.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds