Wall clock time and date at job start Sun Mar 29 2020 21:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47132 * 2 1 4 4 C 1.52998 * 109.47132 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46654 * 179.97438 * 4 3 2 6 6 C 1.36938 * 119.99840 * 86.55878 * 5 4 3 7 7 H 1.08001 * 119.99710 * 29.20890 * 6 5 4 8 8 C 1.38804 * 120.00254 * 209.20571 * 6 5 4 9 9 N 1.31622 * 119.99974 * 212.28237 * 8 6 5 10 10 Si 1.86802 * 119.99987 * 32.27564 * 8 6 5 11 11 H 1.48499 * 109.47356 * 240.00362 * 10 8 6 12 12 H 1.48500 * 109.46917 * 0.02562 * 10 8 6 13 13 H 1.48507 * 109.46632 * 120.00216 * 10 8 6 14 14 C 1.46494 * 120.00382 * 266.55615 * 5 4 3 15 15 C 1.52997 * 109.47312 * 265.08657 * 14 5 4 16 16 H 1.09004 * 110.43228 * 304.41652 * 15 14 5 17 17 C 1.54809 * 110.48742 * 181.73186 * 15 14 5 18 18 C 1.54994 * 102.09101 * 220.44016 * 17 15 14 19 19 O 1.44381 * 103.49134 * 37.02635 * 18 17 15 20 20 C 1.43751 * 106.97238 * 319.93672 * 19 18 17 21 21 H 1.09001 * 109.46864 * 60.00379 * 1 2 3 22 22 H 1.09004 * 109.46493 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47395 * 300.00195 * 1 2 3 24 24 H 1.08997 * 109.47470 * 240.00349 * 2 1 3 25 25 H 1.08998 * 109.47573 * 119.99455 * 2 1 3 26 26 H 1.08996 * 109.47140 * 59.99649 * 3 2 1 27 27 H 1.09006 * 109.46753 * 300.00026 * 3 2 1 28 28 H 1.08997 * 109.47470 * 60.00349 * 4 3 2 29 29 H 1.08993 * 109.47115 * 299.99398 * 4 3 2 30 30 H 0.96994 * 120.00415 * 354.91500 * 9 8 6 31 31 H 1.09005 * 109.46735 * 25.08572 * 14 5 4 32 32 H 1.09004 * 109.47325 * 145.08251 * 14 5 4 33 33 H 1.09000 * 110.90631 * 338.63997 * 17 15 14 34 34 H 1.08998 * 110.90930 * 102.24615 * 17 15 14 35 35 H 1.09005 * 110.62019 * 278.52245 * 18 17 15 36 36 H 1.09007 * 110.75340 * 155.59038 * 18 17 15 37 37 H 1.08997 * 109.87793 * 267.08869 * 20 19 18 38 38 H 1.08992 * 109.87441 * 145.93855 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.2188 3.4938 1.1835 7 1 4.4527 2.9479 2.0855 8 6 4.0809 4.8744 1.2238 9 7 4.7956 5.5827 2.0723 10 14 2.8812 5.7272 0.0736 11 1 3.6184 6.6843 -0.7898 12 1 2.2043 4.7141 -0.7753 13 1 1.8666 6.4610 0.8721 14 6 4.3747 3.4884 -1.2666 15 6 5.8696 3.3439 -1.5587 16 1 6.4589 3.7290 -0.7266 17 6 6.2382 4.0759 -2.8721 18 6 7.2371 3.0872 -3.5255 19 8 6.6957 1.7912 -3.1910 20 6 6.2251 1.8702 -1.8350 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.6766 1.9564 0.8899 27 1 1.6766 1.9564 -0.8900 28 1 3.9337 0.9287 -0.8891 29 1 3.9329 0.9290 0.8909 30 1 5.3634 5.1359 2.7194 31 1 3.8011 3.0286 -2.0713 32 1 4.1188 4.5456 -1.1961 33 1 5.3586 4.2128 -3.5011 34 1 6.7179 5.0321 -2.6631 35 1 8.2327 3.2091 -3.0986 36 1 7.2649 3.2242 -4.6065 37 1 7.0085 1.5434 -1.1513 38 1 5.3399 1.2462 -1.7131 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202513151.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:26 Heat of formation + Delta-G solvation = -42.287651 kcal Electronic energy + Delta-G solvation = -16775.567904 eV Core-core repulsion = 14232.164968 eV Total energy + Delta-G solvation = -2543.402937 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.08396 -36.48858 -34.26276 -32.17204 -31.29644 -29.05407 -27.99106 -25.10099 -23.91328 -22.17250 -20.95591 -20.19249 -19.83327 -17.27766 -16.16832 -15.68275 -15.10975 -14.58934 -14.40485 -14.26188 -13.66570 -13.38225 -12.66420 -12.42723 -12.36454 -12.24498 -12.13043 -11.36805 -11.12220 -10.87825 -10.81398 -10.70513 -10.54976 -10.43308 -10.32690 -10.04435 -9.79790 -9.61801 -9.33147 -9.10542 -8.29954 -7.06399 -6.26413 -3.27448 3.41909 3.52807 3.65781 4.33763 4.56973 4.85076 5.16124 5.25904 5.32273 5.35109 5.36427 5.55148 5.56209 5.62642 5.71533 5.88772 6.00481 6.06300 6.11512 6.13175 6.20025 6.24937 6.28154 6.32834 6.38056 6.48560 6.58902 6.60042 6.73326 6.85654 6.91512 7.08197 7.30501 8.11318 8.48215 9.06678 9.67627 10.24751 11.07543 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.016225 B = 0.011953 C = 0.007990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.317382 B = 2341.927697 C = 3503.399253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.141 4.141 4 C 0.146 3.854 5 N -0.603 5.603 6 C -0.355 4.355 7 H 0.062 0.938 8 C -0.005 4.005 9 N -0.906 5.906 10 Si 1.049 2.951 11 H -0.293 1.293 12 H -0.283 1.283 13 H -0.301 1.301 14 C 0.165 3.835 15 C -0.138 4.138 16 H 0.088 0.912 17 C -0.153 4.153 18 C 0.048 3.952 19 O -0.390 6.390 20 C 0.055 3.945 21 H 0.050 0.950 22 H 0.046 0.954 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.040 0.960 29 H 0.043 0.957 30 H 0.265 0.735 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.084 0.916 37 H 0.049 0.951 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.226 -6.712 -8.622 10.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.181 4.181 4 C 0.020 3.980 5 N -0.325 5.325 6 C -0.484 4.484 7 H 0.080 0.920 8 C -0.209 4.209 9 N -0.544 5.544 10 Si 0.881 3.119 11 H -0.221 1.221 12 H -0.209 1.209 13 H -0.230 1.230 14 C 0.039 3.961 15 C -0.159 4.159 16 H 0.107 0.893 17 C -0.192 4.192 18 C -0.028 4.028 19 O -0.309 6.309 20 C -0.021 4.021 21 H 0.069 0.931 22 H 0.065 0.935 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.067 0.933 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.778 -5.427 -9.189 10.819 hybrid contribution 0.479 -1.161 0.769 1.473 sum -1.298 -6.588 -8.420 10.770 Atomic orbital electron populations 1.21767 0.96690 1.00610 1.01641 1.21513 0.95184 0.98257 1.01141 1.22243 0.99339 0.94592 1.01888 1.21041 0.91314 0.87093 0.98597 1.44193 1.74789 1.10976 1.02543 1.19954 1.48514 0.91736 0.88168 0.92034 1.26030 0.99104 0.93633 1.02086 1.70910 1.24222 1.37604 1.21666 0.83914 0.77411 0.74927 0.75651 1.22095 1.20887 1.23006 1.20951 0.90980 0.96333 0.87839 1.23156 1.01762 0.93985 0.96975 0.89333 1.23183 0.99506 0.99135 0.97339 1.23472 0.96392 0.83120 0.99863 1.88791 1.79827 1.31947 1.30346 1.23321 0.98794 0.97768 0.82206 0.93116 0.93528 0.92906 0.92751 0.92516 0.91845 0.93125 0.94141 0.93819 0.92478 0.93832 0.93980 0.90887 0.90552 0.92768 0.89737 0.93267 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.16 0.37 -1.57 16 2 C -0.12 -1.79 5.93 -26.73 -0.16 -1.95 16 3 C -0.14 -2.56 5.53 -26.73 -0.15 -2.71 16 4 C 0.15 2.88 5.27 -4.04 -0.02 2.86 16 5 N -0.60 -14.02 2.09 -173.24 -0.36 -14.38 16 6 C -0.36 -9.69 9.73 -15.06 -0.15 -9.83 16 7 H 0.06 1.82 8.06 -52.49 -0.42 1.40 16 8 C 0.00 -0.14 5.19 -17.43 -0.09 -0.23 16 9 N -0.91 -27.45 13.70 55.49 0.76 -26.69 16 10 Si 1.05 26.03 25.59 -169.99 -4.35 21.68 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.28 -6.62 6.58 56.52 0.37 -6.25 16 13 H -0.30 -7.56 7.11 56.52 0.40 -7.15 16 14 C 0.17 3.54 3.69 -4.05 -0.01 3.52 16 15 C -0.14 -2.66 3.27 -89.10 -0.29 -2.95 16 16 H 0.09 1.95 8.14 -51.93 -0.42 1.52 16 17 C -0.15 -2.46 6.71 -24.72 -0.17 -2.63 16 18 C 0.05 0.70 7.72 38.21 0.29 1.00 16 19 O -0.39 -6.80 11.52 -35.23 -0.41 -7.21 16 20 C 0.06 0.99 7.16 37.73 0.27 1.26 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.04 0.73 5.65 -51.93 -0.29 0.43 16 29 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 30 H 0.26 7.98 8.73 -40.82 -0.36 7.63 16 31 H 0.04 0.86 8.03 -51.93 -0.42 0.44 16 32 H 0.04 0.97 3.18 -51.93 -0.17 0.81 16 33 H 0.07 1.12 7.87 -51.93 -0.41 0.71 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.09 1.57 4.84 -51.93 -0.25 1.32 16 LS Contribution 295.96 15.07 4.46 4.46 Total: -1.00 -29.33 295.96 -6.63 -35.96 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -6.63 Total: -0.59 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -0.10 Total: -13.23 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.40 Total: -41.07 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -0.41 Total: -7.21 kcal Atomic # 14 Polarization: 26.03 SS G_CDS: -4.35 Total: 21.68 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.33 -6.63 -35.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202513151.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.326 kcal (2) G-P(sol) polarization free energy of solvation -29.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds