Wall clock time and date at job start Sun Mar 29 2020 21:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47132 * 2 1 4 4 C 1.52998 * 109.47132 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46654 * 179.97438 * 4 3 2 6 6 C 1.36938 * 119.99840 * 86.55878 * 5 4 3 7 7 H 1.08001 * 119.99710 * 29.20890 * 6 5 4 8 8 C 1.38804 * 120.00254 * 209.20571 * 6 5 4 9 9 N 1.31622 * 119.99974 * 212.28237 * 8 6 5 10 10 Si 1.86802 * 119.99987 * 32.27564 * 8 6 5 11 11 H 1.48499 * 109.47356 * 240.00362 * 10 8 6 12 12 H 1.48500 * 109.46917 * 0.02562 * 10 8 6 13 13 H 1.48507 * 109.46632 * 120.00216 * 10 8 6 14 14 C 1.46494 * 120.00382 * 266.55615 * 5 4 3 15 15 C 1.52997 * 109.47312 * 265.08657 * 14 5 4 16 16 H 1.09004 * 110.43228 * 304.41652 * 15 14 5 17 17 C 1.54809 * 110.48742 * 181.73186 * 15 14 5 18 18 C 1.54994 * 102.09101 * 220.44016 * 17 15 14 19 19 O 1.44381 * 103.49134 * 37.02635 * 18 17 15 20 20 C 1.43751 * 106.97238 * 319.93672 * 19 18 17 21 21 H 1.09001 * 109.46864 * 60.00379 * 1 2 3 22 22 H 1.09004 * 109.46493 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47395 * 300.00195 * 1 2 3 24 24 H 1.08997 * 109.47470 * 240.00349 * 2 1 3 25 25 H 1.08998 * 109.47573 * 119.99455 * 2 1 3 26 26 H 1.08996 * 109.47140 * 59.99649 * 3 2 1 27 27 H 1.09006 * 109.46753 * 300.00026 * 3 2 1 28 28 H 1.08997 * 109.47470 * 60.00349 * 4 3 2 29 29 H 1.08993 * 109.47115 * 299.99398 * 4 3 2 30 30 H 0.96994 * 120.00415 * 354.91500 * 9 8 6 31 31 H 1.09005 * 109.46735 * 25.08572 * 14 5 4 32 32 H 1.09004 * 109.47325 * 145.08251 * 14 5 4 33 33 H 1.09000 * 110.90631 * 338.63997 * 17 15 14 34 34 H 1.08998 * 110.90930 * 102.24615 * 17 15 14 35 35 H 1.09005 * 110.62019 * 278.52245 * 18 17 15 36 36 H 1.09007 * 110.75340 * 155.59038 * 18 17 15 37 37 H 1.08997 * 109.87793 * 267.08869 * 20 19 18 38 38 H 1.08992 * 109.87441 * 145.93855 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.2188 3.4938 1.1835 7 1 4.4527 2.9479 2.0855 8 6 4.0809 4.8744 1.2238 9 7 4.7956 5.5827 2.0723 10 14 2.8812 5.7272 0.0736 11 1 3.6184 6.6843 -0.7898 12 1 2.2043 4.7141 -0.7753 13 1 1.8666 6.4610 0.8721 14 6 4.3747 3.4884 -1.2666 15 6 5.8696 3.3439 -1.5587 16 1 6.4589 3.7290 -0.7266 17 6 6.2382 4.0759 -2.8721 18 6 7.2371 3.0872 -3.5255 19 8 6.6957 1.7912 -3.1910 20 6 6.2251 1.8702 -1.8350 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.6766 1.9564 0.8899 27 1 1.6766 1.9564 -0.8900 28 1 3.9337 0.9287 -0.8891 29 1 3.9329 0.9290 0.8909 30 1 5.3634 5.1359 2.7194 31 1 3.8011 3.0286 -2.0713 32 1 4.1188 4.5456 -1.1961 33 1 5.3586 4.2128 -3.5011 34 1 6.7179 5.0321 -2.6631 35 1 8.2327 3.2091 -3.0986 36 1 7.2649 3.2242 -4.6065 37 1 7.0085 1.5434 -1.1513 38 1 5.3399 1.2462 -1.7131 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202513151.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:26 Heat of formation + Delta-G solvation = -60.147987 kcal Electronic energy + Delta-G solvation = -16776.342387 eV Core-core repulsion = 14232.164968 eV Total energy + Delta-G solvation = -2544.177419 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.49694 -38.15251 -35.69436 -34.04091 -32.93320 -30.37628 -29.53647 -26.80979 -25.61262 -23.44126 -22.40176 -21.69594 -21.51286 -19.32405 -17.61248 -17.08351 -16.65450 -16.19883 -15.93493 -15.80256 -15.29272 -14.91129 -14.14918 -14.10015 -13.86918 -13.65414 -13.53352 -12.88303 -12.61924 -12.46372 -12.25099 -12.11192 -12.05500 -11.89362 -11.75528 -11.58012 -11.52160 -11.30047 -11.10363 -10.60475 -10.41387 -9.10065 -8.45285 -5.44850 1.41370 1.53137 1.70354 2.51480 3.01319 3.04935 3.37901 3.76545 3.95255 3.98479 4.11325 4.22766 4.27926 4.38089 4.41518 4.47932 4.51260 4.69794 4.74213 4.84123 4.90625 4.95424 4.95856 5.02895 5.04397 5.09084 5.14443 5.20567 5.30982 5.37906 5.47723 5.58078 5.87569 5.94890 6.31874 6.95564 7.67062 8.14677 8.83278 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.016225 B = 0.011953 C = 0.007990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.317382 B = 2341.927697 C = 3503.399253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.133 4.133 4 C 0.143 3.857 5 N -0.615 5.615 6 C -0.335 4.335 7 H 0.024 0.976 8 C -0.056 4.056 9 N -0.942 5.942 10 Si 1.091 2.909 11 H -0.283 1.283 12 H -0.259 1.259 13 H -0.307 1.307 14 C 0.160 3.840 15 C -0.138 4.138 16 H 0.051 0.949 17 C -0.150 4.150 18 C 0.048 3.952 19 O -0.397 6.397 20 C 0.064 3.936 21 H 0.054 0.946 22 H 0.068 0.932 23 H 0.044 0.956 24 H 0.071 0.929 25 H 0.057 0.943 26 H 0.035 0.965 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.032 0.968 30 H 0.249 0.751 31 H 0.068 0.932 32 H 0.028 0.972 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.117 0.883 37 H 0.044 0.956 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.059 -7.748 -11.400 13.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.173 4.173 4 C 0.018 3.982 5 N -0.337 5.337 6 C -0.465 4.465 7 H 0.042 0.958 8 C -0.253 4.253 9 N -0.583 5.583 10 Si 0.918 3.082 11 H -0.210 1.210 12 H -0.184 1.184 13 H -0.236 1.236 14 C 0.035 3.965 15 C -0.159 4.159 16 H 0.070 0.930 17 C -0.188 4.188 18 C -0.028 4.028 19 O -0.317 6.317 20 C -0.012 4.012 21 H 0.073 0.927 22 H 0.087 0.913 23 H 0.063 0.937 24 H 0.090 0.910 25 H 0.076 0.924 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.135 0.865 37 H 0.062 0.938 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.611 -6.502 -11.996 13.892 hybrid contribution 0.804 -0.939 1.658 2.068 sum -1.807 -7.441 -10.337 12.865 Atomic orbital electron populations 1.21749 0.95259 1.02045 1.01490 1.21462 0.96423 0.95553 1.02075 1.22106 0.97736 0.96992 1.00439 1.21156 0.92583 0.85156 0.99263 1.44278 1.75538 1.11970 1.01930 1.19754 1.46335 0.91753 0.88671 0.95795 1.27067 0.99997 0.94852 1.03426 1.71029 1.26216 1.37834 1.23216 0.83364 0.75498 0.74810 0.74502 1.21035 1.18419 1.23571 1.21076 0.92594 0.95460 0.87380 1.23004 0.99697 0.95612 0.97627 0.93036 1.23198 1.00616 0.99439 0.95568 1.23678 0.96055 0.81229 1.01796 1.88784 1.79998 1.33457 1.29463 1.23142 0.98690 0.96587 0.82829 0.92733 0.91320 0.93660 0.91017 0.92390 0.94650 0.93152 0.91590 0.94993 0.94120 0.91410 0.95457 0.89515 0.89974 0.92012 0.86465 0.93817 0.89365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.91 71.98 0.71 -2.72 16 2 C -0.12 -3.12 5.93 30.60 0.18 -2.94 16 3 C -0.13 -4.64 5.53 30.60 0.17 -4.47 16 4 C 0.14 5.52 5.27 86.38 0.46 5.97 16 5 N -0.61 -28.37 2.09 -702.02 -1.46 -29.84 16 6 C -0.34 -18.80 9.73 84.03 0.82 -17.98 16 7 H 0.02 1.50 8.06 -2.91 -0.02 1.48 16 8 C -0.06 -3.26 5.19 84.86 0.44 -2.82 16 9 N -0.94 -59.18 13.70 21.65 0.30 -58.88 16 10 Si 1.09 52.73 25.59 68.60 1.76 54.49 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.26 -11.40 6.58 99.48 0.65 -10.74 16 13 H -0.31 -14.98 7.11 99.48 0.71 -14.27 16 14 C 0.16 6.61 3.69 86.38 0.32 6.92 16 15 C -0.14 -5.20 3.27 -9.81 -0.03 -5.23 16 16 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 17 C -0.15 -4.42 6.71 31.89 0.21 -4.20 16 18 C 0.05 1.25 7.72 72.66 0.56 1.81 16 19 O -0.40 -12.69 11.52 -148.98 -1.72 -14.40 16 20 C 0.06 2.19 7.16 72.35 0.52 2.71 16 21 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 23 H 0.04 1.10 8.14 -2.39 -0.02 1.09 16 24 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.07 2.21 5.65 -2.39 -0.01 2.20 16 29 H 0.03 1.29 8.07 -2.39 -0.02 1.27 16 30 H 0.25 15.86 8.73 -92.71 -0.81 15.05 16 31 H 0.07 2.47 8.03 -2.38 -0.02 2.45 16 32 H 0.03 1.22 3.18 -2.39 -0.01 1.21 16 33 H 0.09 2.33 7.87 -2.39 -0.02 2.31 16 34 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.12 2.31 8.14 -2.38 -0.02 2.29 16 37 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.09 2.98 4.84 -2.39 -0.01 2.97 16 Total: -1.00 -64.47 295.96 4.14 -60.32 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.91 Total: 11.26 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: 4.36 Total: -22.95 kcal Atomic # 7 Polarization: -87.55 SS G_CDS: -1.17 Total: -88.72 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -1.72 Total: -14.40 kcal Atomic # 14 Polarization: 52.73 SS G_CDS: 1.76 Total: 54.49 kcal Total: -64.47 4.14 -60.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202513151.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.176 kcal (2) G-P(sol) polarization free energy of solvation -64.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds