Wall clock time and date at job start Sun Mar 29 2020 21:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53006 * 109.47329 * 2 1 4 4 N 1.46901 * 109.47496 * 120.00026 * 2 1 3 5 5 C 1.47841 * 110.99999 * 54.15369 * 4 2 1 6 6 C 1.54909 * 104.79576 * 146.36345 * 5 4 2 7 7 C 1.55131 * 101.65517 * 322.93511 * 6 5 4 8 8 H 1.09001 * 110.85554 * 277.20095 * 7 6 5 9 9 O 1.42895 * 110.70671 * 154.03278 * 7 6 5 10 10 C 1.42904 * 113.99914 * 96.40231 * 9 7 6 11 11 C 1.53001 * 109.47293 * 179.97438 * 10 9 7 12 12 C 1.50694 * 109.47168 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00563 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.47444 * 111.00330 * 175.00153 * 4 2 1 21 21 H 1.09001 * 109.47488 * 300.00012 * 1 2 3 22 22 H 1.09002 * 109.47412 * 59.99915 * 1 2 3 23 23 H 1.09003 * 109.47333 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47488 * 239.99988 * 2 1 3 25 25 H 1.08996 * 109.47298 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.46943 * 300.00372 * 3 2 1 27 27 H 1.09001 * 109.46846 * 59.99594 * 3 2 1 28 28 H 1.08993 * 110.37740 * 265.19957 * 5 4 2 29 29 H 1.09003 * 110.36899 * 27.42524 * 5 4 2 30 30 H 1.08997 * 110.99237 * 204.83988 * 6 5 4 31 31 H 1.09003 * 110.98248 * 81.02504 * 6 5 4 32 32 H 1.09002 * 109.47155 * 59.99999 * 10 9 7 33 33 H 1.08998 * 109.46998 * 299.99564 * 10 9 7 34 34 H 1.09007 * 109.46922 * 59.99502 * 11 10 9 35 35 H 1.09003 * 109.46836 * 300.00257 * 11 10 9 36 36 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 37 37 H 1.09003 * 109.88889 * 117.33432 * 20 4 2 38 38 H 1.09003 * 110.02238 * 356.22197 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.4343 -2.0459 1.3060 6 6 2.5465 -2.9081 1.9534 7 6 3.8223 -2.3187 1.2966 8 1 3.9902 -2.7570 0.3129 9 8 4.9608 -2.5168 2.1371 10 6 5.7367 -3.6693 1.8027 11 6 6.9234 -3.7813 2.7619 12 6 7.7411 -4.9970 2.4096 13 1 7.4444 -5.6267 1.5839 14 6 8.8681 -5.3056 3.1415 15 7 9.2298 -4.5385 4.1468 16 14 9.8814 -6.8130 2.7053 17 1 11.0333 -6.9216 3.6363 18 1 9.0355 -8.0281 2.8198 19 1 10.3813 -6.6874 1.3126 20 6 3.4886 -0.8169 1.1750 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1299 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 0.5494 -2.0276 1.9421 29 1 1.1819 -2.4290 0.3172 30 1 2.4249 -3.9601 1.6955 31 1 2.5657 -2.7725 3.0348 32 1 6.1037 -3.5762 0.7805 33 1 5.1162 -4.5616 1.8861 34 1 6.5566 -3.8741 3.7842 35 1 7.5437 -2.8889 2.6781 36 1 10.0224 -4.7558 4.6619 37 1 3.9209 -0.2718 2.0142 38 1 3.8809 -0.4247 0.2367 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205631934.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:34 Heat of formation + Delta-G solvation = -78.378718 kcal Electronic energy + Delta-G solvation = -15876.589958 eV Core-core repulsion = 13331.621995 eV Total energy + Delta-G solvation = -2544.967963 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.60856 -38.42073 -35.51987 -34.61453 -31.98713 -30.38104 -29.34619 -27.59328 -26.48719 -23.27516 -22.83024 -21.97635 -20.84872 -18.76631 -17.66696 -17.38601 -16.57807 -16.40632 -15.90607 -15.39769 -15.14086 -14.41953 -14.34349 -14.12504 -13.68984 -13.50681 -13.20240 -12.98454 -12.90714 -12.78440 -12.63112 -12.40680 -12.17999 -12.00222 -11.92001 -11.73496 -11.67631 -11.46969 -11.38524 -10.64579 -10.35796 -9.30464 -8.24466 -6.38279 1.40487 1.44766 1.52849 2.36283 2.71301 3.02196 3.09184 3.61296 3.72621 4.00449 4.07056 4.13727 4.28967 4.34993 4.38756 4.42090 4.44762 4.57247 4.82087 4.83818 4.88020 4.90768 4.96674 4.98902 5.00170 5.05808 5.11826 5.33135 5.36493 5.39642 5.55402 5.71835 5.93774 6.09960 6.16408 6.43298 6.77405 7.31666 8.88463 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.066138 B = 0.004225 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.254910 B = 6625.382042 C = 6773.070087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.064 3.936 3 C -0.143 4.143 4 N -0.530 5.530 5 C 0.052 3.948 6 C -0.150 4.150 7 C 0.057 3.943 8 H 0.072 0.928 9 O -0.400 6.400 10 C 0.087 3.913 11 C 0.028 3.972 12 C -0.548 4.548 13 H 0.068 0.932 14 C 0.000 4.000 15 N -0.932 5.932 16 Si 0.976 3.024 17 H -0.282 1.282 18 H -0.264 1.264 19 H -0.264 1.264 20 C 0.051 3.949 21 H 0.060 0.940 22 H 0.074 0.926 23 H 0.059 0.941 24 H 0.041 0.959 25 H 0.046 0.954 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.045 0.955 34 H -0.007 1.007 35 H -0.007 1.007 36 H 0.266 0.734 37 H 0.069 0.931 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.255 6.826 -10.252 21.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.044 4.044 3 C -0.201 4.201 4 N -0.256 5.256 5 C -0.075 4.075 6 C -0.188 4.188 7 C -0.002 4.002 8 H 0.090 0.910 9 O -0.319 6.319 10 C 0.011 3.989 11 C -0.009 4.009 12 C -0.586 4.586 13 H 0.086 0.914 14 C -0.198 4.198 15 N -0.572 5.572 16 Si 0.799 3.201 17 H -0.207 1.207 18 H -0.188 1.188 19 H -0.188 1.188 20 C -0.077 4.077 21 H 0.079 0.921 22 H 0.093 0.907 23 H 0.078 0.922 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.011 0.989 35 H 0.012 0.988 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.239 7.287 -9.551 21.012 hybrid contribution 1.084 -1.177 -0.578 1.702 sum -16.155 6.110 -10.129 20.023 Atomic orbital electron populations 1.21859 0.92783 1.02477 1.02792 1.21963 0.96869 0.95505 0.90020 1.21860 1.00681 0.94885 1.02642 1.63741 1.04402 1.18218 1.39264 1.22950 0.97337 0.86898 1.00271 1.23176 0.94364 1.00146 1.01148 1.23520 0.86218 0.96861 0.93606 0.91004 1.87928 1.39789 1.47273 1.56956 1.22510 0.91956 0.86383 0.98069 1.18934 0.91928 0.95989 0.94091 1.21442 1.10334 1.10603 1.16213 0.91382 1.26068 0.98743 1.00460 0.94552 1.70126 1.26190 1.40218 1.20625 0.85345 0.77697 0.78626 0.78432 1.20730 1.18829 1.18844 1.22725 0.88927 0.94181 1.01883 0.92135 0.90665 0.92206 0.94090 0.93462 0.90551 0.92249 0.88911 0.92017 0.89874 0.91300 0.93679 0.93662 0.98850 0.98812 0.92502 0.91248 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.97 71.98 0.65 -1.40 16 2 C 0.06 1.19 2.24 44.91 0.10 1.29 16 3 C -0.14 -2.48 9.15 71.98 0.66 -1.82 16 4 N -0.53 -12.48 5.03 -860.37 -4.33 -16.81 16 5 C 0.05 1.12 5.33 86.77 0.46 1.58 16 6 C -0.15 -4.04 6.80 31.98 0.22 -3.82 16 7 C 0.06 1.78 3.44 31.77 0.11 1.89 16 8 H 0.07 2.08 7.82 -2.39 -0.02 2.07 16 9 O -0.40 -16.81 10.07 -148.98 -1.50 -18.31 16 10 C 0.09 3.89 5.71 71.98 0.41 4.30 16 11 C 0.03 1.57 5.34 29.85 0.16 1.73 16 12 C -0.55 -31.80 9.11 25.60 0.23 -31.56 16 13 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 14 C 0.00 0.00 5.46 84.66 0.46 0.47 16 15 N -0.93 -57.96 13.29 21.45 0.28 -57.67 16 16 Si 0.98 44.16 29.54 68.60 2.03 46.19 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 18 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 19 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 20 C 0.05 1.42 5.94 86.65 0.51 1.94 16 21 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 22 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.06 0.81 6.74 -2.39 -0.02 0.80 16 24 H 0.04 0.76 8.10 -2.39 -0.02 0.74 16 25 H 0.05 0.90 6.82 -2.39 -0.02 0.89 16 26 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.06 1.13 7.32 -2.39 -0.02 1.11 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.04 1.90 8.11 -2.39 -0.02 1.88 16 33 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 34 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 35 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 36 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 37 H 0.07 2.22 8.06 -2.39 -0.02 2.20 16 38 H 0.07 1.74 6.67 -2.39 -0.02 1.72 16 Total: -1.00 -66.11 303.85 1.45 -64.66 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: 0.99 Total: 7.34 kcal Atomic # 6 Polarization: -29.38 SS G_CDS: 3.97 Total: -25.41 kcal Atomic # 7 Polarization: -70.44 SS G_CDS: -4.04 Total: -74.48 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -1.50 Total: -18.31 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -66.11 1.45 -64.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205631934.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.716 kcal (2) G-P(sol) polarization free energy of solvation -66.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds