Wall clock time and date at job start Sun Mar 29 2020 22:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47381 * 2 1 4 4 N 1.46899 * 109.47623 * 174.92498 * 3 2 1 5 5 C 1.46899 * 111.00100 * 199.38363 * 4 3 2 6 6 C 1.50705 * 109.47306 * 65.44695 * 5 4 3 7 7 H 1.08001 * 119.99807 * 5.07023 * 6 5 4 8 8 C 1.37875 * 120.00232 * 185.07004 * 6 5 4 9 9 N 1.31517 * 119.99958 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00082 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47262 * 59.99753 * 10 8 6 12 12 H 1.48502 * 109.46889 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.46883 * 299.99707 * 10 8 6 14 14 C 1.46893 * 110.99990 * 75.42683 * 4 3 2 15 15 C 1.53004 * 109.46902 * 196.91254 * 14 4 3 16 16 C 1.52996 * 113.00206 * 54.02411 * 15 14 4 17 17 C 1.54039 * 113.81514 * 282.20027 * 15 14 4 18 18 O 1.44449 * 85.42510 * 223.23784 * 17 15 14 19 19 C 1.44174 * 93.38047 * 24.08697 * 18 17 15 20 20 H 1.08998 * 109.46881 * 60.00098 * 1 2 3 21 21 H 1.09001 * 109.46857 * 179.97438 * 1 2 3 22 22 H 1.08987 * 109.47143 * 299.99719 * 1 2 3 23 23 H 1.09007 * 109.47249 * 120.00389 * 2 1 3 24 24 H 1.09004 * 109.47308 * 239.99948 * 2 1 3 25 25 H 1.09003 * 109.47129 * 294.92850 * 3 2 1 26 26 H 1.09001 * 109.46879 * 54.91998 * 3 2 1 27 27 H 1.08995 * 109.46933 * 185.44744 * 5 4 3 28 28 H 1.08999 * 109.46860 * 305.44967 * 5 4 3 29 29 H 0.96993 * 119.99830 * 180.02562 * 9 8 6 30 30 H 1.08998 * 109.47160 * 316.90928 * 14 4 3 31 31 H 1.08998 * 109.46979 * 76.91344 * 14 4 3 32 32 H 1.09002 * 109.46661 * 64.94623 * 16 15 14 33 33 H 1.08998 * 109.47540 * 184.93708 * 16 15 14 34 34 H 1.08994 * 109.47445 * 304.94563 * 16 15 14 35 35 H 1.08998 * 113.86541 * 337.34309 * 17 15 14 36 36 H 1.08996 * 113.86345 * 109.04951 * 17 15 14 37 37 H 1.08998 * 113.86813 * 221.76370 * 19 18 17 38 38 H 1.09008 * 113.98264 * 90.07585 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5039 1.4443 0.1225 5 6 3.9921 2.7515 0.5816 6 6 3.5020 3.0067 1.9837 7 1 2.9588 2.2385 2.5140 8 6 3.7471 4.2207 2.5895 9 7 4.4090 5.1560 1.9439 10 14 3.1402 4.5367 4.3277 11 1 3.7474 3.5456 5.2519 12 1 3.5299 5.9071 4.7465 13 1 1.6613 4.4085 4.3665 14 6 4.1388 1.0609 -1.1455 15 6 5.5941 0.6651 -0.8879 16 6 5.7387 -0.4166 0.1844 17 6 6.5398 1.8652 -0.6921 18 8 7.4523 1.1370 -1.5428 19 6 6.3978 0.3806 -2.1708 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8899 23 1 1.8934 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.7528 1.9294 -0.9319 26 1 1.6043 1.9818 0.8410 27 1 5.0820 2.7564 0.5712 28 1 3.6189 3.5320 -0.0814 29 1 4.5817 6.0099 2.3702 30 1 3.6037 0.2159 -1.5788 31 1 4.1082 1.9034 -1.8364 32 1 5.2778 -1.3399 -0.1667 33 1 6.7959 -0.5915 0.3840 34 1 5.2454 -0.0894 1.0995 35 1 6.1722 2.7925 -1.1314 36 1 6.8916 1.9868 0.3323 37 1 6.6373 -0.6727 -2.3167 38 1 5.9854 0.8518 -3.0631 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207797070.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:36 Heat of formation + Delta-G solvation = -21.635293 kcal Electronic energy + Delta-G solvation = -16800.812625 eV Core-core repulsion = 14258.305241 eV Total energy + Delta-G solvation = -2542.507383 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.30074 -36.91753 -33.21033 -32.64706 -31.01661 -27.48377 -26.51542 -26.13568 -25.06540 -23.65675 -21.22180 -19.89572 -18.39661 -16.48648 -15.75975 -15.62616 -15.37026 -14.70556 -14.42499 -14.02642 -13.65673 -13.03592 -12.89717 -12.43031 -12.04771 -11.93844 -11.79394 -11.57904 -11.43174 -11.13083 -11.01066 -10.78692 -10.67908 -10.37882 -10.11802 -10.02758 -9.89670 -9.57649 -9.21029 -9.10547 -8.42932 -7.23374 -6.03800 -4.04628 3.32091 3.36765 3.39321 4.11621 4.40004 4.54388 4.97195 5.26937 5.31549 5.44334 5.47178 5.54764 5.60538 5.71273 5.80312 5.89586 6.02259 6.03750 6.14935 6.23425 6.27520 6.33221 6.37077 6.45195 6.46542 6.54436 6.60417 6.72980 6.85915 6.89983 7.32212 7.36836 7.81053 8.09963 8.20483 8.55460 9.03521 9.59506 11.06750 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.018333 B = 0.010084 C = 0.007152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.973460 B = 2775.882640 C = 3914.320660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.061 3.939 4 N -0.532 5.532 5 C 0.184 3.816 6 C -0.507 4.507 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.278 1.278 14 C 0.062 3.938 15 C -0.112 4.112 16 C -0.115 4.115 17 C 0.049 3.951 18 O -0.391 6.391 19 C 0.037 3.963 20 H 0.047 0.953 21 H 0.047 0.953 22 H 0.054 0.946 23 H 0.067 0.933 24 H 0.049 0.951 25 H 0.015 0.985 26 H 0.086 0.914 27 H 0.039 0.961 28 H -0.009 1.009 29 H 0.261 0.739 30 H 0.063 0.937 31 H 0.025 0.975 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.827 -9.273 -5.962 11.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.067 4.067 4 N -0.256 5.256 5 C 0.059 3.941 6 C -0.546 4.546 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.723 3.277 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.204 1.204 14 C -0.067 4.067 15 C -0.113 4.113 16 C -0.172 4.172 17 C -0.027 4.027 18 O -0.311 6.311 19 C -0.040 4.040 20 H 0.066 0.934 21 H 0.066 0.934 22 H 0.073 0.927 23 H 0.085 0.915 24 H 0.068 0.932 25 H 0.034 0.966 26 H 0.104 0.896 27 H 0.057 0.943 28 H 0.008 0.992 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.043 0.957 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.102 0.898 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.341 -9.413 -5.608 11.039 hybrid contribution -0.740 1.013 0.273 1.284 sum -2.081 -8.400 -5.335 10.166 Atomic orbital electron populations 1.21732 0.96650 1.00722 1.01591 1.21530 0.94396 0.97993 1.01606 1.22026 0.89149 0.95227 1.00316 1.62076 1.04421 1.33782 1.25341 1.19942 0.96393 0.82600 0.95181 1.21122 1.35525 0.98923 0.99013 0.91948 1.24973 0.95459 0.96091 0.97997 1.69938 1.40771 1.05539 1.37496 0.86605 0.79129 0.77174 0.84768 1.20185 1.21414 1.20360 1.22069 0.93672 0.98707 0.92292 1.23526 0.95347 0.96889 0.95516 1.21390 1.00769 0.95993 0.99062 1.24259 0.87679 0.94831 0.95887 1.89643 1.27998 1.56705 1.56712 1.24013 0.87323 0.96944 0.95745 0.93356 0.93387 0.92659 0.91464 0.93247 0.96633 0.89555 0.94279 0.99165 0.92891 0.91852 0.95660 0.93163 0.93294 0.89784 0.90117 0.88648 0.89831 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 37.16 0.37 -1.59 16 2 C -0.12 -1.79 5.97 -26.73 -0.16 -1.95 16 3 C 0.06 1.15 4.82 -3.83 -0.02 1.13 16 4 N -0.53 -10.81 3.57 -236.08 -0.84 -11.66 16 5 C 0.18 4.55 4.40 -4.97 -0.02 4.53 16 6 C -0.51 -13.74 8.12 -34.44 -0.28 -14.02 16 7 H 0.06 1.68 7.46 -52.49 -0.39 1.29 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.10 13.29 55.43 0.74 -25.36 16 10 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 C 0.06 1.07 4.35 -3.83 -0.02 1.05 16 15 C -0.11 -1.85 1.05 -153.42 -0.16 -2.01 16 16 C -0.12 -1.83 8.96 37.16 0.33 -1.49 16 17 C 0.05 0.91 5.98 37.64 0.22 1.14 16 18 O -0.39 -7.02 12.38 -35.23 -0.44 -7.45 16 19 C 0.04 0.55 8.37 37.64 0.31 0.86 16 20 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 22 H 0.05 0.74 8.14 -51.94 -0.42 0.32 16 23 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.05 0.71 6.88 -51.93 -0.36 0.35 16 25 H 0.02 0.29 8.00 -51.93 -0.42 -0.13 16 26 H 0.09 1.83 6.62 -51.93 -0.34 1.48 16 27 H 0.04 0.99 4.51 -51.93 -0.23 0.76 16 28 H -0.01 -0.26 8.13 -51.93 -0.42 -0.68 16 29 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.06 0.98 6.57 -51.93 -0.34 0.64 16 31 H 0.03 0.46 7.96 -51.93 -0.41 0.04 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.75 8.08 -51.93 -0.42 0.33 16 34 H 0.08 1.53 7.56 -51.93 -0.39 1.13 16 35 H 0.08 1.56 7.69 -51.93 -0.40 1.16 16 36 H 0.10 1.87 7.69 -51.93 -0.40 1.47 16 37 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 38 H 0.07 0.96 8.10 -51.92 -0.42 0.54 16 LS Contribution 299.85 15.07 4.52 4.52 Total: -1.00 -28.55 299.85 -7.18 -35.73 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -6.62 Total: -1.21 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: 0.49 Total: -10.90 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: -0.11 Total: -37.02 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.44 Total: -7.45 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.55 -7.18 -35.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207797070.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.094 kcal (2) G-P(sol) polarization free energy of solvation -28.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds