Wall clock time and date at job start Sun Mar 29 2020 22:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47381 * 2 1 4 4 N 1.46899 * 109.47623 * 174.92498 * 3 2 1 5 5 C 1.46899 * 111.00100 * 199.38363 * 4 3 2 6 6 C 1.50705 * 109.47306 * 65.44695 * 5 4 3 7 7 H 1.08001 * 119.99807 * 5.07023 * 6 5 4 8 8 C 1.37875 * 120.00232 * 185.07004 * 6 5 4 9 9 N 1.31517 * 119.99958 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00082 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47262 * 59.99753 * 10 8 6 12 12 H 1.48502 * 109.46889 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.46883 * 299.99707 * 10 8 6 14 14 C 1.46893 * 110.99990 * 75.42683 * 4 3 2 15 15 C 1.53004 * 109.46902 * 196.91254 * 14 4 3 16 16 C 1.52996 * 113.00206 * 54.02411 * 15 14 4 17 17 C 1.54039 * 113.81514 * 282.20027 * 15 14 4 18 18 O 1.44449 * 85.42510 * 223.23784 * 17 15 14 19 19 C 1.44174 * 93.38047 * 24.08697 * 18 17 15 20 20 H 1.08998 * 109.46881 * 60.00098 * 1 2 3 21 21 H 1.09001 * 109.46857 * 179.97438 * 1 2 3 22 22 H 1.08987 * 109.47143 * 299.99719 * 1 2 3 23 23 H 1.09007 * 109.47249 * 120.00389 * 2 1 3 24 24 H 1.09004 * 109.47308 * 239.99948 * 2 1 3 25 25 H 1.09003 * 109.47129 * 294.92850 * 3 2 1 26 26 H 1.09001 * 109.46879 * 54.91998 * 3 2 1 27 27 H 1.08995 * 109.46933 * 185.44744 * 5 4 3 28 28 H 1.08999 * 109.46860 * 305.44967 * 5 4 3 29 29 H 0.96993 * 119.99830 * 180.02562 * 9 8 6 30 30 H 1.08998 * 109.47160 * 316.90928 * 14 4 3 31 31 H 1.08998 * 109.46979 * 76.91344 * 14 4 3 32 32 H 1.09002 * 109.46661 * 64.94623 * 16 15 14 33 33 H 1.08998 * 109.47540 * 184.93708 * 16 15 14 34 34 H 1.08994 * 109.47445 * 304.94563 * 16 15 14 35 35 H 1.08998 * 113.86541 * 337.34309 * 17 15 14 36 36 H 1.08996 * 113.86345 * 109.04951 * 17 15 14 37 37 H 1.08998 * 113.86813 * 221.76370 * 19 18 17 38 38 H 1.09008 * 113.98264 * 90.07585 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5039 1.4443 0.1225 5 6 3.9921 2.7515 0.5816 6 6 3.5020 3.0067 1.9837 7 1 2.9588 2.2385 2.5140 8 6 3.7471 4.2207 2.5895 9 7 4.4090 5.1560 1.9439 10 14 3.1402 4.5367 4.3277 11 1 3.7474 3.5456 5.2519 12 1 3.5299 5.9071 4.7465 13 1 1.6613 4.4085 4.3665 14 6 4.1388 1.0609 -1.1455 15 6 5.5941 0.6651 -0.8879 16 6 5.7387 -0.4166 0.1844 17 6 6.5398 1.8652 -0.6921 18 8 7.4523 1.1370 -1.5428 19 6 6.3978 0.3806 -2.1708 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8899 23 1 1.8934 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.7528 1.9294 -0.9319 26 1 1.6043 1.9818 0.8410 27 1 5.0820 2.7564 0.5712 28 1 3.6189 3.5320 -0.0814 29 1 4.5817 6.0099 2.3702 30 1 3.6037 0.2159 -1.5788 31 1 4.1082 1.9034 -1.8364 32 1 5.2778 -1.3399 -0.1667 33 1 6.7959 -0.5915 0.3840 34 1 5.2454 -0.0894 1.0995 35 1 6.1722 2.7925 -1.1314 36 1 6.8916 1.9868 0.3323 37 1 6.6373 -0.6727 -2.3167 38 1 5.9854 0.8518 -3.0631 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207797070.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:35 Heat of formation + Delta-G solvation = -39.691186 kcal Electronic energy + Delta-G solvation = -16801.595587 eV Core-core repulsion = 14258.305241 eV Total energy + Delta-G solvation = -2543.290346 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.67910 -38.50020 -34.92982 -34.26912 -32.51818 -29.33387 -27.87276 -27.50701 -26.44861 -25.42799 -22.75811 -21.44458 -19.76684 -18.48983 -17.23563 -17.04962 -16.82164 -16.57820 -15.79247 -15.53078 -15.16749 -14.54880 -14.35064 -13.90771 -13.77855 -13.47888 -13.18340 -12.90863 -12.84279 -12.74005 -12.54642 -12.46811 -12.25547 -11.98242 -11.69593 -11.54708 -11.42869 -11.04900 -10.99010 -10.58765 -10.51042 -8.93953 -8.17495 -6.25551 1.40589 1.42714 1.50420 2.40941 2.77841 3.11587 3.15925 3.51267 3.93077 4.16685 4.19468 4.23909 4.38386 4.39897 4.56455 4.62627 4.63183 4.72213 4.79384 4.97870 4.98813 5.01460 5.04555 5.08474 5.20245 5.25043 5.27196 5.29606 5.38307 5.50641 5.54929 5.57003 5.69997 6.13023 6.40807 6.71650 6.91714 7.43312 8.92735 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.018333 B = 0.010084 C = 0.007152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.973460 B = 2775.882640 C = 3914.320660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C 0.060 3.940 4 N -0.533 5.533 5 C 0.198 3.802 6 C -0.518 4.518 7 H 0.060 0.940 8 C 0.003 3.997 9 N -0.933 5.933 10 Si 0.960 3.040 11 H -0.269 1.269 12 H -0.286 1.286 13 H -0.269 1.269 14 C 0.063 3.937 15 C -0.111 4.111 16 C -0.108 4.108 17 C 0.044 3.956 18 O -0.406 6.406 19 C 0.047 3.953 20 H 0.054 0.946 21 H 0.071 0.929 22 H 0.045 0.955 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.015 0.985 26 H 0.055 0.945 27 H 0.030 0.970 28 H -0.047 1.047 29 H 0.262 0.738 30 H 0.094 0.906 31 H 0.016 0.984 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.115 0.885 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.623 -11.418 -6.389 13.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C -0.068 4.068 4 N -0.256 5.256 5 C 0.072 3.928 6 C -0.556 4.556 7 H 0.078 0.922 8 C -0.195 4.195 9 N -0.574 5.574 10 Si 0.786 3.214 11 H -0.194 1.194 12 H -0.211 1.211 13 H -0.195 1.195 14 C -0.066 4.066 15 C -0.111 4.111 16 C -0.165 4.165 17 C -0.032 4.032 18 O -0.326 6.326 19 C -0.029 4.029 20 H 0.073 0.927 21 H 0.090 0.910 22 H 0.064 0.936 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.033 0.967 26 H 0.074 0.926 27 H 0.047 0.953 28 H -0.029 1.029 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.034 0.966 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.133 0.867 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.150 -11.584 -6.044 13.242 hybrid contribution -0.483 1.661 0.338 1.763 sum -2.633 -9.923 -5.706 11.745 Atomic orbital electron populations 1.21706 0.94828 1.02268 1.01521 1.21432 0.95898 0.94949 1.02114 1.22067 0.88080 0.97703 0.98926 1.62051 1.05517 1.30669 1.27385 1.19620 0.95627 0.83845 0.93718 1.21432 1.35133 0.98966 1.00070 0.92174 1.25816 0.95629 0.95931 1.02084 1.70069 1.42089 1.05964 1.39255 0.85567 0.78909 0.77083 0.79867 1.19414 1.21132 1.19457 1.22159 0.94405 0.99319 0.90668 1.23559 0.94423 0.95952 0.97213 1.21318 1.00939 0.96664 0.97606 1.24082 0.88976 0.95352 0.94830 1.89624 1.29020 1.56996 1.56934 1.24235 0.85286 0.98520 0.94888 0.92708 0.90989 0.93552 0.92159 0.91379 0.96674 0.92597 0.95263 1.02940 0.92906 0.88803 0.96589 0.90410 0.92979 0.92556 0.91863 0.90707 0.86664 0.89333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.91 71.98 0.71 -2.74 16 2 C -0.11 -3.00 5.97 30.59 0.18 -2.82 16 3 C 0.06 2.26 4.82 86.30 0.42 2.67 16 4 N -0.53 -21.72 3.57 -900.82 -3.22 -24.94 16 5 C 0.20 10.19 4.40 85.56 0.38 10.57 16 6 C -0.52 -28.81 8.12 25.60 0.21 -28.60 16 7 H 0.06 3.30 7.46 -2.91 -0.02 3.28 16 8 C 0.00 0.19 5.46 84.65 0.46 0.65 16 9 N -0.93 -55.88 13.29 21.45 0.28 -55.59 16 10 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 13 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 14 C 0.06 2.10 4.35 86.31 0.38 2.48 16 15 C -0.11 -3.52 1.05 -51.48 -0.05 -3.57 16 16 C -0.11 -3.24 8.96 71.98 0.64 -2.60 16 17 C 0.04 1.67 5.98 72.30 0.43 2.10 16 18 O -0.41 -14.18 12.38 -148.98 -1.84 -16.03 16 19 C 0.05 1.25 8.37 72.30 0.60 1.86 16 20 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 21 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 22 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 24 H 0.07 1.69 6.88 -2.39 -0.02 1.67 16 25 H 0.01 0.56 8.00 -2.39 -0.02 0.54 16 26 H 0.06 2.42 6.62 -2.39 -0.02 2.40 16 27 H 0.03 1.57 4.51 -2.39 -0.01 1.56 16 28 H -0.05 -2.73 8.13 -2.39 -0.02 -2.75 16 29 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 30 H 0.09 2.59 6.57 -2.39 -0.02 2.57 16 31 H 0.02 0.57 7.96 -2.39 -0.02 0.55 16 32 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.05 1.51 8.08 -2.39 -0.02 1.49 16 34 H 0.06 2.01 7.56 -2.39 -0.02 1.99 16 35 H 0.06 2.58 7.69 -2.39 -0.02 2.56 16 36 H 0.07 3.09 7.69 -2.39 -0.02 3.07 16 37 H 0.12 2.36 8.10 -2.39 -0.02 2.34 16 38 H 0.09 2.08 8.10 -2.38 -0.02 2.06 16 Total: -1.00 -62.83 299.85 2.61 -60.22 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 1.00 Total: 10.01 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: 4.36 Total: -20.00 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -2.93 Total: -80.53 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -1.84 Total: -16.03 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -62.83 2.61 -60.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207797070.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.527 kcal (2) G-P(sol) polarization free energy of solvation -62.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds