Wall clock time and date at job start Sun Mar 29 2020 21:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47188 * 2 1 4 4 C 1.52993 * 109.47177 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47206 * 185.64748 * 4 3 2 6 6 C 1.36939 * 120.00200 * 82.69444 * 5 4 3 7 7 H 1.08000 * 120.00438 * 171.21434 * 6 5 4 8 8 C 1.38813 * 119.99897 * 351.21387 * 6 5 4 9 9 N 1.31625 * 119.99916 * 1.55239 * 8 6 5 10 10 Si 1.86795 * 120.00173 * 181.54867 * 8 6 5 11 11 H 1.48504 * 109.46977 * 89.99980 * 10 8 6 12 12 H 1.48506 * 109.47477 * 210.00230 * 10 8 6 13 13 H 1.48500 * 109.47358 * 330.00066 * 10 8 6 14 14 C 1.46498 * 119.99967 * 262.69784 * 5 4 3 15 15 C 1.53001 * 109.47146 * 274.98746 * 14 5 4 16 16 C 1.53004 * 113.00272 * 304.72713 * 15 14 5 17 17 C 1.54039 * 113.92220 * 76.65487 * 15 14 5 18 18 O 1.44178 * 85.51553 * 136.81882 * 17 15 14 19 19 C 1.44175 * 93.34000 * 335.80684 * 18 17 15 20 20 H 1.09000 * 109.47184 * 300.00106 * 1 2 3 21 21 H 1.08997 * 109.47030 * 60.00003 * 1 2 3 22 22 H 1.09002 * 109.47532 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47184 * 239.99893 * 2 1 3 24 24 H 1.08997 * 109.47030 * 119.99997 * 2 1 3 25 25 H 1.09000 * 109.47145 * 59.99870 * 3 2 1 26 26 H 1.09005 * 109.46844 * 300.00004 * 3 2 1 27 27 H 1.08996 * 109.47374 * 65.64537 * 4 3 2 28 28 H 1.09001 * 109.47074 * 305.64523 * 4 3 2 29 29 H 0.97001 * 119.99877 * 179.97438 * 9 8 6 30 30 H 1.09005 * 109.47016 * 154.98854 * 14 5 4 31 31 H 1.08992 * 109.47455 * 34.98853 * 14 5 4 32 32 H 1.09000 * 109.46800 * 297.84170 * 16 15 14 33 33 H 1.08997 * 109.47181 * 57.83266 * 16 15 14 34 34 H 1.08997 * 109.47215 * 177.84043 * 16 15 14 35 35 H 1.08996 * 113.86263 * 250.96293 * 17 15 14 36 36 H 1.08993 * 113.86394 * 22.67247 * 17 15 14 37 37 H 1.09005 * 113.86732 * 270.04266 * 19 18 17 38 38 H 1.09005 * 113.98417 * 138.35326 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0584 2.8170 0.1353 6 6 4.1450 3.3935 1.3744 7 1 4.6348 4.3488 1.4925 8 6 3.6031 2.7501 2.4786 9 7 3.0332 1.5718 2.3397 10 14 3.6830 3.5564 4.1617 11 1 2.4738 4.3936 4.3673 12 1 3.7429 2.5072 5.2110 13 1 4.8957 4.4094 4.2450 14 6 4.4541 3.5747 -1.0544 15 6 5.9070 3.2493 -1.4065 16 6 6.8725 3.4921 -0.2446 17 6 6.0922 1.8833 -2.0940 18 8 6.9942 2.5780 -2.9786 19 6 6.3749 3.8582 -2.7417 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9564 0.8900 26 1 1.6766 1.9563 -0.8900 27 1 3.9329 1.0189 -0.9370 28 1 3.9336 0.8435 0.8342 29 1 2.6549 1.1221 3.1114 30 1 4.3591 4.6419 -0.8537 31 1 3.8084 3.3033 -1.8895 32 1 6.8586 4.5483 0.0246 33 1 6.5658 2.8944 0.6137 34 1 7.8809 3.2069 -0.5445 35 1 6.5781 1.1362 -1.4665 36 1 5.1929 1.5111 -2.5845 37 1 5.5619 4.0890 -3.4302 38 1 7.0833 4.6789 -2.6279 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207801484.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:56 Heat of formation + Delta-G solvation = 5.681479 kcal Electronic energy + Delta-G solvation = -17019.075773 eV Core-core repulsion = 14477.752934 eV Total energy + Delta-G solvation = -2541.322839 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.13013 -36.29026 -33.56288 -32.08309 -30.15445 -27.82739 -26.43541 -26.10478 -24.58731 -23.34545 -20.77292 -19.67089 -18.25645 -16.76598 -15.55761 -15.50294 -15.17503 -14.71257 -14.09381 -13.43626 -13.28426 -12.97092 -12.91619 -12.00304 -11.87623 -11.75026 -11.50450 -11.27771 -11.07795 -10.94596 -10.62916 -10.44886 -10.18551 -10.08360 -9.89498 -9.77900 -9.70180 -9.44170 -9.28119 -9.15239 -8.22031 -6.73192 -5.55502 -3.06143 3.39095 3.45846 3.46665 4.19381 4.48516 4.82029 5.33710 5.44376 5.54018 5.70433 5.76274 5.84996 5.90241 5.97500 6.01853 6.12851 6.29282 6.41588 6.41838 6.52646 6.57690 6.63180 6.67938 6.71666 6.75614 6.84469 6.89061 7.05452 7.11120 7.38532 7.48171 7.70377 8.00529 8.24212 8.51140 9.34552 9.93812 10.36677 11.34705 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.019609 B = 0.010931 C = 0.007561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.597618 B = 2561.017652 C = 3702.419041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 C -0.107 4.107 4 C 0.174 3.826 5 N -0.600 5.600 6 C -0.231 4.231 7 H 0.071 0.929 8 C -0.011 4.011 9 N -0.905 5.905 10 Si 0.905 3.095 11 H -0.292 1.292 12 H -0.293 1.293 13 H -0.284 1.284 14 C 0.159 3.841 15 C -0.140 4.140 16 C -0.114 4.114 17 C 0.049 3.951 18 O -0.393 6.393 19 C 0.035 3.965 20 H 0.050 0.950 21 H 0.040 0.960 22 H 0.037 0.963 23 H 0.033 0.967 24 H 0.064 0.936 25 H 0.095 0.905 26 H 0.003 0.997 27 H -0.005 1.005 28 H 0.101 0.899 29 H 0.247 0.753 30 H 0.049 0.951 31 H 0.036 0.964 32 H 0.049 0.951 33 H 0.083 0.917 34 H 0.039 0.961 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.394 0.614 -5.957 6.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 C -0.147 4.147 4 C 0.049 3.951 5 N -0.320 5.320 6 C -0.361 4.361 7 H 0.089 0.911 8 C -0.206 4.206 9 N -0.554 5.554 10 Si 0.736 3.264 11 H -0.219 1.219 12 H -0.219 1.219 13 H -0.210 1.210 14 C 0.031 3.969 15 C -0.143 4.143 16 C -0.171 4.171 17 C -0.028 4.028 18 O -0.312 6.312 19 C -0.043 4.043 20 H 0.069 0.931 21 H 0.059 0.941 22 H 0.056 0.944 23 H 0.051 0.949 24 H 0.083 0.917 25 H 0.114 0.886 26 H 0.021 0.979 27 H 0.013 0.987 28 H 0.119 0.881 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.058 0.942 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.546 0.439 -5.952 6.165 hybrid contribution -0.268 0.473 0.933 1.080 sum 1.278 0.912 -5.019 5.259 Atomic orbital electron populations 1.21741 0.97994 0.99596 1.00844 1.21348 0.93697 0.99612 1.00182 1.22267 0.98793 0.93709 0.99899 1.21093 0.91954 0.85046 0.96964 1.44096 1.74876 1.11704 1.01339 1.19304 1.29708 1.02684 0.84381 0.91094 1.24791 1.00373 0.97526 0.97913 1.70222 1.43256 1.14306 1.27582 0.86234 0.77521 0.78168 0.84482 1.21901 1.21925 1.20966 1.20736 0.90243 0.95828 0.90088 1.24259 1.00708 0.94474 0.94886 1.21394 0.96081 1.01680 0.97935 1.23989 0.92481 0.96205 0.90100 1.89552 1.51652 1.20456 1.69508 1.24034 0.96412 0.87941 0.95865 0.93127 0.94091 0.94424 0.94860 0.91736 0.88637 0.97862 0.98674 0.88149 0.94177 0.93267 0.94580 0.93202 0.89800 0.94169 0.89815 0.90778 0.90944 0.90111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.91 37.16 0.37 -2.09 16 2 C -0.11 -2.14 5.93 -26.73 -0.16 -2.30 16 3 C -0.11 -2.39 4.61 -26.73 -0.12 -2.52 16 4 C 0.17 3.99 4.87 -4.05 -0.02 3.97 16 5 N -0.60 -13.83 2.18 -173.25 -0.38 -14.21 16 6 C -0.23 -5.84 8.27 -15.06 -0.12 -5.96 16 7 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 8 C -0.01 -0.28 5.19 -17.43 -0.09 -0.37 16 9 N -0.90 -23.72 7.26 55.49 0.40 -23.31 16 10 Si 0.90 21.12 29.55 -169.99 -5.02 16.10 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 C 0.16 3.11 5.12 -4.04 -0.02 3.09 16 15 C -0.14 -2.46 1.17 -153.43 -0.18 -2.64 16 16 C -0.11 -2.04 8.56 37.16 0.32 -1.73 16 17 C 0.05 0.85 7.28 37.61 0.27 1.12 16 18 O -0.39 -6.96 12.37 -35.23 -0.44 -7.40 16 19 C 0.04 0.54 8.36 37.61 0.31 0.85 16 20 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 21 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 25 H 0.10 2.46 6.01 -51.93 -0.31 2.14 16 26 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 27 H 0.00 -0.11 6.32 -51.93 -0.33 -0.43 16 28 H 0.10 2.59 5.92 -51.93 -0.31 2.29 16 29 H 0.25 6.47 8.31 -40.82 -0.34 6.13 16 30 H 0.05 0.96 8.00 -51.93 -0.42 0.54 16 31 H 0.04 0.68 8.06 -51.93 -0.42 0.26 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.74 6.82 -51.93 -0.35 1.39 16 34 H 0.04 0.67 8.09 -51.93 -0.42 0.25 16 35 H 0.08 1.46 8.10 -51.93 -0.42 1.04 16 36 H 0.07 1.26 7.41 -51.93 -0.38 0.87 16 37 H 0.07 1.01 8.10 -51.93 -0.42 0.58 16 38 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 LS Contribution 296.00 15.07 4.46 4.46 Total: -1.00 -25.96 296.00 -7.12 -33.09 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -6.71 Total: -0.15 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 0.56 Total: -8.58 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.03 Total: -37.52 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.44 Total: -7.40 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -25.96 -7.12 -33.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207801484.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.768 kcal (2) G-P(sol) polarization free energy of solvation -25.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds