Wall clock time and date at job start Sun Mar 29 2020 21:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47188 * 2 1 4 4 C 1.52993 * 109.47177 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47206 * 185.64748 * 4 3 2 6 6 C 1.36939 * 120.00200 * 82.69444 * 5 4 3 7 7 H 1.08000 * 120.00438 * 171.21434 * 6 5 4 8 8 C 1.38813 * 119.99897 * 351.21387 * 6 5 4 9 9 N 1.31625 * 119.99916 * 1.55239 * 8 6 5 10 10 Si 1.86795 * 120.00173 * 181.54867 * 8 6 5 11 11 H 1.48504 * 109.46977 * 89.99980 * 10 8 6 12 12 H 1.48506 * 109.47477 * 210.00230 * 10 8 6 13 13 H 1.48500 * 109.47358 * 330.00066 * 10 8 6 14 14 C 1.46498 * 119.99967 * 262.69784 * 5 4 3 15 15 C 1.53001 * 109.47146 * 274.98746 * 14 5 4 16 16 C 1.53004 * 113.00272 * 304.72713 * 15 14 5 17 17 C 1.54039 * 113.92220 * 76.65487 * 15 14 5 18 18 O 1.44178 * 85.51553 * 136.81882 * 17 15 14 19 19 C 1.44175 * 93.34000 * 335.80684 * 18 17 15 20 20 H 1.09000 * 109.47184 * 300.00106 * 1 2 3 21 21 H 1.08997 * 109.47030 * 60.00003 * 1 2 3 22 22 H 1.09002 * 109.47532 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47184 * 239.99893 * 2 1 3 24 24 H 1.08997 * 109.47030 * 119.99997 * 2 1 3 25 25 H 1.09000 * 109.47145 * 59.99870 * 3 2 1 26 26 H 1.09005 * 109.46844 * 300.00004 * 3 2 1 27 27 H 1.08996 * 109.47374 * 65.64537 * 4 3 2 28 28 H 1.09001 * 109.47074 * 305.64523 * 4 3 2 29 29 H 0.97001 * 119.99877 * 179.97438 * 9 8 6 30 30 H 1.09005 * 109.47016 * 154.98854 * 14 5 4 31 31 H 1.08992 * 109.47455 * 34.98853 * 14 5 4 32 32 H 1.09000 * 109.46800 * 297.84170 * 16 15 14 33 33 H 1.08997 * 109.47181 * 57.83266 * 16 15 14 34 34 H 1.08997 * 109.47215 * 177.84043 * 16 15 14 35 35 H 1.08996 * 113.86263 * 250.96293 * 17 15 14 36 36 H 1.08993 * 113.86394 * 22.67247 * 17 15 14 37 37 H 1.09005 * 113.86732 * 270.04266 * 19 18 17 38 38 H 1.09005 * 113.98417 * 138.35326 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0584 2.8170 0.1353 6 6 4.1450 3.3935 1.3744 7 1 4.6348 4.3488 1.4925 8 6 3.6031 2.7501 2.4786 9 7 3.0332 1.5718 2.3397 10 14 3.6830 3.5564 4.1617 11 1 2.4738 4.3936 4.3673 12 1 3.7429 2.5072 5.2110 13 1 4.8957 4.4094 4.2450 14 6 4.4541 3.5747 -1.0544 15 6 5.9070 3.2493 -1.4065 16 6 6.8725 3.4921 -0.2446 17 6 6.0922 1.8833 -2.0940 18 8 6.9942 2.5780 -2.9786 19 6 6.3749 3.8582 -2.7417 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9564 0.8900 26 1 1.6766 1.9563 -0.8900 27 1 3.9329 1.0189 -0.9370 28 1 3.9336 0.8435 0.8342 29 1 2.6549 1.1221 3.1114 30 1 4.3591 4.6419 -0.8537 31 1 3.8084 3.3033 -1.8895 32 1 6.8586 4.5483 0.0246 33 1 6.5658 2.8944 0.6137 34 1 7.8809 3.2069 -0.5445 35 1 6.5781 1.1362 -1.4665 36 1 5.1929 1.5111 -2.5845 37 1 5.5619 4.0890 -3.4302 38 1 7.0833 4.6789 -2.6279 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207801484.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:55 Heat of formation + Delta-G solvation = -7.587818 kcal Electronic energy + Delta-G solvation = -17019.651173 eV Core-core repulsion = 14477.752934 eV Total energy + Delta-G solvation = -2541.898239 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.50322 -38.05245 -35.14510 -33.80028 -31.85111 -29.49212 -28.00503 -27.41337 -26.20308 -24.99652 -22.46826 -21.40937 -19.65255 -18.62376 -17.15044 -16.87063 -16.65708 -16.30747 -15.77973 -15.21994 -14.98745 -14.48157 -14.33357 -13.52649 -13.38049 -13.35622 -13.04957 -12.86447 -12.75071 -12.69325 -12.36815 -12.11480 -11.89163 -11.66804 -11.60149 -11.41479 -11.29386 -11.09120 -11.05243 -10.51500 -10.11776 -8.58165 -7.51431 -5.01016 1.50561 1.53479 1.58660 2.59227 2.87315 3.38055 3.48398 3.86564 4.07324 4.34002 4.40369 4.41862 4.45749 4.53668 4.65798 4.69156 4.82796 4.87462 4.97341 5.04694 5.14820 5.15164 5.17728 5.19460 5.30154 5.33791 5.35834 5.41151 5.59043 5.66069 5.71503 5.77170 6.09592 6.37633 6.58586 7.38781 8.08304 8.45792 9.35897 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.019609 B = 0.010931 C = 0.007561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.597618 B = 2561.017652 C = 3702.419041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C -0.097 4.097 4 C 0.181 3.819 5 N -0.611 5.611 6 C -0.231 4.231 7 H 0.070 0.930 8 C -0.057 4.057 9 N -0.915 5.915 10 Si 0.954 3.046 11 H -0.296 1.296 12 H -0.302 1.302 13 H -0.279 1.279 14 C 0.159 3.841 15 C -0.143 4.143 16 C -0.106 4.106 17 C 0.050 3.950 18 O -0.406 6.406 19 C 0.046 3.954 20 H 0.036 0.964 21 H 0.051 0.949 22 H 0.061 0.939 23 H 0.049 0.951 24 H 0.045 0.955 25 H 0.060 0.940 26 H 0.005 0.995 27 H 0.011 0.989 28 H 0.069 0.931 29 H 0.237 0.763 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.513 1.083 -7.396 7.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.143 4.143 3 C -0.137 4.137 4 C 0.056 3.944 5 N -0.332 5.332 6 C -0.361 4.361 7 H 0.088 0.912 8 C -0.250 4.250 9 N -0.565 5.565 10 Si 0.786 3.214 11 H -0.224 1.224 12 H -0.229 1.229 13 H -0.204 1.204 14 C 0.032 3.968 15 C -0.146 4.146 16 C -0.163 4.163 17 C -0.026 4.026 18 O -0.325 6.325 19 C -0.031 4.031 20 H 0.056 0.944 21 H 0.070 0.930 22 H 0.080 0.920 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.023 0.977 27 H 0.029 0.971 28 H 0.087 0.913 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.679 0.925 -7.414 7.658 hybrid contribution -0.268 0.355 1.334 1.406 sum 1.411 1.281 -6.080 6.372 Atomic orbital electron populations 1.21672 0.95999 1.01162 1.00737 1.21263 0.95470 0.97570 1.00027 1.22064 0.98297 0.95198 0.98092 1.20889 0.92333 0.84859 0.96310 1.44232 1.75171 1.11979 1.01835 1.19452 1.28781 1.02426 0.85412 0.91214 1.25328 1.01215 0.98279 1.00205 1.70420 1.43922 1.14879 1.27279 0.85444 0.77206 0.77071 0.81682 1.22434 1.22884 1.20401 1.20857 0.91545 0.95409 0.88956 1.24190 0.99076 0.95417 0.95920 1.21275 0.96706 1.01378 0.96953 1.23967 0.92640 0.95976 0.90041 1.89547 1.52022 1.21497 1.69449 1.24170 0.97200 0.87588 0.94131 0.94436 0.92976 0.92040 0.93197 0.93609 0.92128 0.97656 0.97075 0.91273 0.95195 0.93220 0.93615 0.92613 0.93097 0.93113 0.90504 0.90172 0.88905 0.88175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.49 9.91 71.98 0.71 -3.78 16 2 C -0.11 -4.00 5.93 30.60 0.18 -3.82 16 3 C -0.10 -4.31 4.61 30.59 0.14 -4.16 16 4 C 0.18 8.28 4.87 86.38 0.42 8.70 16 5 N -0.61 -27.98 2.18 -702.03 -1.53 -29.51 16 6 C -0.23 -11.67 8.27 84.03 0.69 -10.97 16 7 H 0.07 3.48 7.83 -2.91 -0.02 3.46 16 8 C -0.06 -2.98 5.19 84.86 0.44 -2.54 16 9 N -0.92 -49.10 7.26 21.65 0.16 -48.94 16 10 Si 0.95 44.04 29.55 68.60 2.03 46.07 16 11 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 12 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 13 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 14 C 0.16 5.95 5.12 86.38 0.44 6.39 16 15 C -0.14 -4.74 1.17 -51.48 -0.06 -4.80 16 16 C -0.11 -3.68 8.56 71.98 0.62 -3.06 16 17 C 0.05 1.66 7.28 72.28 0.53 2.18 16 18 O -0.41 -13.31 12.37 -148.98 -1.84 -15.15 16 19 C 0.05 1.26 8.36 72.27 0.60 1.87 16 20 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 21 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 22 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 23 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.06 3.16 6.01 -2.39 -0.01 3.14 16 26 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 27 H 0.01 0.47 6.32 -2.39 -0.02 0.45 16 28 H 0.07 3.64 5.92 -2.39 -0.01 3.63 16 29 H 0.24 12.80 8.31 -92.71 -0.77 12.03 16 30 H 0.05 1.84 8.00 -2.38 -0.02 1.82 16 31 H 0.05 1.62 8.06 -2.39 -0.02 1.60 16 32 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.05 2.10 6.82 -2.39 -0.02 2.08 16 34 H 0.05 1.62 8.09 -2.39 -0.02 1.60 16 35 H 0.08 2.62 8.10 -2.39 -0.02 2.60 16 36 H 0.08 2.54 7.41 -2.39 -0.02 2.52 16 37 H 0.09 2.20 8.10 -2.38 -0.02 2.18 16 38 H 0.10 2.38 8.10 -2.38 -0.02 2.36 16 Total: -1.00 -54.91 296.00 4.53 -50.38 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 1.00 Total: 11.14 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: 4.72 Total: -13.99 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: -1.37 Total: -78.45 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -1.84 Total: -15.15 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -54.91 4.53 -50.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207801484.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.795 kcal (2) G-P(sol) polarization free energy of solvation -54.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds