Wall clock time and date at job start Sun Mar 29 2020 21:35:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53004 * 109.47188 * 2 1
4 4 C 1.52993 * 109.47177 * 180.02562 * 3 2 1
5 5 N 1.46498 * 109.47206 * 185.64748 * 4 3 2
6 6 C 1.36939 * 120.00200 * 82.69444 * 5 4 3
7 7 H 1.08000 * 120.00438 * 171.21434 * 6 5 4
8 8 C 1.38813 * 119.99897 * 351.21387 * 6 5 4
9 9 N 1.31625 * 119.99916 * 1.55239 * 8 6 5
10 10 Si 1.86795 * 120.00173 * 181.54867 * 8 6 5
11 11 H 1.48504 * 109.46977 * 89.99980 * 10 8 6
12 12 H 1.48506 * 109.47477 * 210.00230 * 10 8 6
13 13 H 1.48500 * 109.47358 * 330.00066 * 10 8 6
14 14 C 1.46498 * 119.99967 * 262.69784 * 5 4 3
15 15 C 1.53001 * 109.47146 * 274.98746 * 14 5 4
16 16 C 1.53004 * 113.00272 * 304.72713 * 15 14 5
17 17 C 1.54039 * 113.92220 * 76.65487 * 15 14 5
18 18 O 1.44178 * 85.51553 * 136.81882 * 17 15 14
19 19 C 1.44175 * 93.34000 * 335.80684 * 18 17 15
20 20 H 1.09000 * 109.47184 * 300.00106 * 1 2 3
21 21 H 1.08997 * 109.47030 * 60.00003 * 1 2 3
22 22 H 1.09002 * 109.47532 * 180.02562 * 1 2 3
23 23 H 1.09000 * 109.47184 * 239.99893 * 2 1 3
24 24 H 1.08997 * 109.47030 * 119.99997 * 2 1 3
25 25 H 1.09000 * 109.47145 * 59.99870 * 3 2 1
26 26 H 1.09005 * 109.46844 * 300.00004 * 3 2 1
27 27 H 1.08996 * 109.47374 * 65.64537 * 4 3 2
28 28 H 1.09001 * 109.47074 * 305.64523 * 4 3 2
29 29 H 0.97001 * 119.99877 * 179.97438 * 9 8 6
30 30 H 1.09005 * 109.47016 * 154.98854 * 14 5 4
31 31 H 1.08992 * 109.47455 * 34.98853 * 14 5 4
32 32 H 1.09000 * 109.46800 * 297.84170 * 16 15 14
33 33 H 1.08997 * 109.47181 * 57.83266 * 16 15 14
34 34 H 1.08997 * 109.47215 * 177.84043 * 16 15 14
35 35 H 1.08996 * 113.86263 * 250.96293 * 17 15 14
36 36 H 1.08993 * 113.86394 * 22.67247 * 17 15 14
37 37 H 1.09005 * 113.86732 * 270.04266 * 19 18 17
38 38 H 1.09005 * 113.98417 * 138.35326 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5699 1.4425 -0.0006
5 7 4.0584 2.8170 0.1353
6 6 4.1450 3.3935 1.3744
7 1 4.6348 4.3488 1.4925
8 6 3.6031 2.7501 2.4786
9 7 3.0332 1.5718 2.3397
10 14 3.6830 3.5564 4.1617
11 1 2.4738 4.3936 4.3673
12 1 3.7429 2.5072 5.2110
13 1 4.8957 4.4094 4.2450
14 6 4.4541 3.5747 -1.0544
15 6 5.9070 3.2493 -1.4065
16 6 6.8725 3.4921 -0.2446
17 6 6.0922 1.8833 -2.0940
18 8 6.9942 2.5780 -2.9786
19 6 6.3749 3.8582 -2.7417
20 1 -0.3633 0.5138 0.8900
21 1 -0.3633 0.5138 -0.8900
22 1 -0.3634 -1.0277 0.0005
23 1 1.8933 -0.5138 -0.8900
24 1 1.8933 -0.5138 0.8900
25 1 1.6767 1.9564 0.8900
26 1 1.6766 1.9563 -0.8900
27 1 3.9329 1.0189 -0.9370
28 1 3.9336 0.8435 0.8342
29 1 2.6549 1.1221 3.1114
30 1 4.3591 4.6419 -0.8537
31 1 3.8084 3.3033 -1.8895
32 1 6.8586 4.5483 0.0246
33 1 6.5658 2.8944 0.6137
34 1 7.8809 3.2069 -0.5445
35 1 6.5781 1.1362 -1.4665
36 1 5.1929 1.5111 -2.5845
37 1 5.5619 4.0890 -3.4302
38 1 7.0833 4.6789 -2.6279
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001207801484.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:35:55
Heat of formation + Delta-G solvation = -7.587818 kcal
Electronic energy + Delta-G solvation = -17019.651173 eV
Core-core repulsion = 14477.752934 eV
Total energy + Delta-G solvation = -2541.898239 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-41.50322 -38.05245 -35.14510 -33.80028 -31.85111 -29.49212 -28.00503 -27.41337
-26.20308 -24.99652 -22.46826 -21.40937 -19.65255 -18.62376 -17.15044 -16.87063
-16.65708 -16.30747 -15.77973 -15.21994 -14.98745 -14.48157 -14.33357 -13.52649
-13.38049 -13.35622 -13.04957 -12.86447 -12.75071 -12.69325 -12.36815 -12.11480
-11.89163 -11.66804 -11.60149 -11.41479 -11.29386 -11.09120 -11.05243 -10.51500
-10.11776 -8.58165 -7.51431 -5.01016 1.50561 1.53479 1.58660 2.59227
2.87315 3.38055 3.48398 3.86564 4.07324 4.34002 4.40369 4.41862
4.45749 4.53668 4.65798 4.69156 4.82796 4.87462 4.97341 5.04694
5.14820 5.15164 5.17728 5.19460 5.30154 5.33791 5.35834 5.41151
5.59043 5.66069 5.71503 5.77170 6.09592 6.37633 6.58586 7.38781
8.08304 8.45792 9.35897
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.019609 B = 0.010931 C = 0.007561
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1427.597618 B = 2561.017652 C = 3702.419041
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.105 4.105
3 C -0.097 4.097
4 C 0.181 3.819
5 N -0.611 5.611
6 C -0.231 4.231
7 H 0.070 0.930
8 C -0.057 4.057
9 N -0.915 5.915
10 Si 0.954 3.046
11 H -0.296 1.296
12 H -0.302 1.302
13 H -0.279 1.279
14 C 0.159 3.841
15 C -0.143 4.143
16 C -0.106 4.106
17 C 0.050 3.950
18 O -0.406 6.406
19 C 0.046 3.954
20 H 0.036 0.964
21 H 0.051 0.949
22 H 0.061 0.939
23 H 0.049 0.951
24 H 0.045 0.955
25 H 0.060 0.940
26 H 0.005 0.995
27 H 0.011 0.989
28 H 0.069 0.931
29 H 0.237 0.763
30 H 0.049 0.951
31 H 0.046 0.954
32 H 0.055 0.945
33 H 0.050 0.950
34 H 0.050 0.950
35 H 0.077 0.923
36 H 0.080 0.920
37 H 0.093 0.907
38 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.513 1.083 -7.396 7.626
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.143 4.143
3 C -0.137 4.137
4 C 0.056 3.944
5 N -0.332 5.332
6 C -0.361 4.361
7 H 0.088 0.912
8 C -0.250 4.250
9 N -0.565 5.565
10 Si 0.786 3.214
11 H -0.224 1.224
12 H -0.229 1.229
13 H -0.204 1.204
14 C 0.032 3.968
15 C -0.146 4.146
16 C -0.163 4.163
17 C -0.026 4.026
18 O -0.325 6.325
19 C -0.031 4.031
20 H 0.056 0.944
21 H 0.070 0.930
22 H 0.080 0.920
23 H 0.068 0.932
24 H 0.064 0.936
25 H 0.079 0.921
26 H 0.023 0.977
27 H 0.029 0.971
28 H 0.087 0.913
29 H 0.048 0.952
30 H 0.068 0.932
31 H 0.064 0.936
32 H 0.074 0.926
33 H 0.069 0.931
34 H 0.069 0.931
35 H 0.095 0.905
36 H 0.098 0.902
37 H 0.111 0.889
38 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges 1.679 0.925 -7.414 7.658
hybrid contribution -0.268 0.355 1.334 1.406
sum 1.411 1.281 -6.080 6.372
Atomic orbital electron populations
1.21672 0.95999 1.01162 1.00737 1.21263 0.95470 0.97570 1.00027
1.22064 0.98297 0.95198 0.98092 1.20889 0.92333 0.84859 0.96310
1.44232 1.75171 1.11979 1.01835 1.19452 1.28781 1.02426 0.85412
0.91214 1.25328 1.01215 0.98279 1.00205 1.70420 1.43922 1.14879
1.27279 0.85444 0.77206 0.77071 0.81682 1.22434 1.22884 1.20401
1.20857 0.91545 0.95409 0.88956 1.24190 0.99076 0.95417 0.95920
1.21275 0.96706 1.01378 0.96953 1.23967 0.92640 0.95976 0.90041
1.89547 1.52022 1.21497 1.69449 1.24170 0.97200 0.87588 0.94131
0.94436 0.92976 0.92040 0.93197 0.93609 0.92128 0.97656 0.97075
0.91273 0.95195 0.93220 0.93615 0.92613 0.93097 0.93113 0.90504
0.90172 0.88905 0.88175
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.49 9.91 71.98 0.71 -3.78 16
2 C -0.11 -4.00 5.93 30.60 0.18 -3.82 16
3 C -0.10 -4.31 4.61 30.59 0.14 -4.16 16
4 C 0.18 8.28 4.87 86.38 0.42 8.70 16
5 N -0.61 -27.98 2.18 -702.03 -1.53 -29.51 16
6 C -0.23 -11.67 8.27 84.03 0.69 -10.97 16
7 H 0.07 3.48 7.83 -2.91 -0.02 3.46 16
8 C -0.06 -2.98 5.19 84.86 0.44 -2.54 16
9 N -0.92 -49.10 7.26 21.65 0.16 -48.94 16
10 Si 0.95 44.04 29.55 68.60 2.03 46.07 16
11 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16
12 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16
13 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16
14 C 0.16 5.95 5.12 86.38 0.44 6.39 16
15 C -0.14 -4.74 1.17 -51.48 -0.06 -4.80 16
16 C -0.11 -3.68 8.56 71.98 0.62 -3.06 16
17 C 0.05 1.66 7.28 72.28 0.53 2.18 16
18 O -0.41 -13.31 12.37 -148.98 -1.84 -15.15 16
19 C 0.05 1.26 8.36 72.27 0.60 1.87 16
20 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16
21 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16
22 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16
23 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16
24 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16
25 H 0.06 3.16 6.01 -2.39 -0.01 3.14 16
26 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16
27 H 0.01 0.47 6.32 -2.39 -0.02 0.45 16
28 H 0.07 3.64 5.92 -2.39 -0.01 3.63 16
29 H 0.24 12.80 8.31 -92.71 -0.77 12.03 16
30 H 0.05 1.84 8.00 -2.38 -0.02 1.82 16
31 H 0.05 1.62 8.06 -2.39 -0.02 1.60 16
32 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16
33 H 0.05 2.10 6.82 -2.39 -0.02 2.08 16
34 H 0.05 1.62 8.09 -2.39 -0.02 1.60 16
35 H 0.08 2.62 8.10 -2.39 -0.02 2.60 16
36 H 0.08 2.54 7.41 -2.39 -0.02 2.52 16
37 H 0.09 2.20 8.10 -2.38 -0.02 2.18 16
38 H 0.10 2.38 8.10 -2.38 -0.02 2.36 16
Total: -1.00 -54.91 296.00 4.53 -50.38
By element:
Atomic # 1 Polarization: 10.15 SS G_CDS: 1.00 Total: 11.14 kcal
Atomic # 6 Polarization: -18.71 SS G_CDS: 4.72 Total: -13.99 kcal
Atomic # 7 Polarization: -77.08 SS G_CDS: -1.37 Total: -78.45 kcal
Atomic # 8 Polarization: -13.31 SS G_CDS: -1.84 Total: -15.15 kcal
Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal
Total: -54.91 4.53 -50.38 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001207801484.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.795 kcal
(2) G-P(sol) polarization free energy of solvation -54.913 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.118 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.530 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.383 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.588 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds