Wall clock time and date at job start Sun Mar 29 2020 22:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47155 * 2 1 4 4 N 1.46901 * 109.46642 * 174.40418 * 3 2 1 5 5 C 1.46904 * 111.00394 * 294.31784 * 4 3 2 6 6 C 1.50695 * 109.47090 * 289.03556 * 5 4 3 7 7 H 1.07998 * 120.00296 * 356.65788 * 6 5 4 8 8 C 1.37884 * 120.00127 * 176.66368 * 6 5 4 9 9 N 1.31513 * 119.99660 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00172 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46972 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47086 * 120.00222 * 10 8 6 13 13 H 1.48499 * 109.46943 * 240.00107 * 10 8 6 14 14 C 1.46894 * 111.00212 * 58.27898 * 4 3 2 15 15 C 1.52997 * 109.47457 * 72.98108 * 14 4 3 16 16 H 1.08993 * 110.27701 * 56.12416 * 15 14 4 17 17 C 1.54951 * 110.31136 * 178.21808 * 15 14 4 18 18 C 1.55417 * 100.89175 * 155.28439 * 17 15 14 19 19 C 1.54384 * 102.31029 * 325.99027 * 18 17 15 20 20 O 1.43239 * 107.58832 * 21.28761 * 19 18 17 21 21 H 1.09002 * 109.47148 * 59.99998 * 1 2 3 22 22 H 1.09000 * 109.47325 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46957 * 299.99889 * 1 2 3 24 24 H 1.08997 * 109.46958 * 239.99518 * 2 1 3 25 25 H 1.09002 * 109.47148 * 120.00002 * 2 1 3 26 26 H 1.08997 * 109.47127 * 54.40593 * 3 2 1 27 27 H 1.08991 * 109.47065 * 294.40409 * 3 2 1 28 28 H 1.08991 * 109.47457 * 169.02934 * 5 4 3 29 29 H 1.09000 * 109.46810 * 49.03079 * 5 4 3 30 30 H 0.96993 * 119.99884 * 179.97438 * 9 8 6 31 31 H 1.09004 * 109.47396 * 192.98053 * 14 4 3 32 32 H 1.09006 * 109.47128 * 312.97590 * 14 4 3 33 33 H 1.08993 * 111.12398 * 273.27866 * 17 15 14 34 34 H 1.09003 * 111.12242 * 37.43900 * 17 15 14 35 35 H 1.09000 * 110.87999 * 207.74971 * 18 17 15 36 36 H 1.08998 * 110.93367 * 84.25216 * 18 17 15 37 37 H 1.08997 * 109.82809 * 261.77411 * 19 18 17 38 38 H 1.09002 * 109.82553 * 140.79825 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5028 1.4445 0.1351 5 6 3.9113 0.9215 1.4456 6 6 3.5573 1.9198 2.5175 7 1 3.1263 2.8724 2.2471 8 6 3.7837 1.6171 3.8435 9 7 4.3082 0.4569 4.1728 10 14 3.3456 2.8549 5.1721 11 1 2.7749 4.0737 4.5444 12 1 2.3462 2.2582 6.0944 13 1 4.5678 3.2169 5.9338 14 6 4.1331 0.6867 -0.9540 15 6 4.0397 1.4884 -2.2538 16 1 4.4894 2.4726 -2.1237 17 6 4.7390 0.7259 -3.4074 18 6 3.9999 1.3167 -4.6404 19 6 2.5758 1.5481 -4.0908 20 8 2.6688 1.6167 -2.6630 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8932 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.5972 1.9844 0.8356 27 1 1.7608 1.9265 -0.9358 28 1 4.9877 0.7508 1.4492 29 1 3.3938 -0.0182 1.6391 30 1 4.4678 0.2441 5.1055 31 1 5.1807 0.5068 -0.7126 32 1 3.6198 -0.2670 -1.0776 33 1 5.8043 0.9537 -3.4398 34 1 4.5710 -0.3481 -3.3270 35 1 3.9866 0.6030 -5.4641 36 1 4.4531 2.2578 -4.9520 37 1 1.9289 0.7199 -4.3798 38 1 2.1766 2.4844 -4.4808 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207860993.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:37 Heat of formation + Delta-G solvation = -53.336183 kcal Electronic energy + Delta-G solvation = -16693.427951 eV Core-core repulsion = 14149.545914 eV Total energy + Delta-G solvation = -2543.882037 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.34757 -36.89621 -32.73124 -32.23494 -31.80783 -29.89111 -26.84975 -25.64498 -23.63881 -22.04156 -21.47067 -20.92907 -19.02537 -16.70479 -16.11822 -15.74095 -14.85845 -14.64130 -14.51956 -14.06331 -13.47014 -13.16640 -12.95808 -12.69726 -12.17955 -11.68295 -11.58331 -11.43430 -11.19032 -11.03849 -10.92367 -10.78139 -10.71131 -10.55215 -10.43278 -10.24323 -9.86243 -9.40970 -9.22566 -9.05000 -8.35419 -7.00705 -5.95265 -3.95247 3.35416 3.42620 3.48506 4.06035 4.48691 4.59202 4.79511 4.94208 5.18774 5.39603 5.41196 5.49109 5.66900 5.69217 5.72430 5.78366 5.82613 5.86167 5.95363 6.03827 6.11124 6.23917 6.37984 6.45419 6.57628 6.60880 6.74052 6.91635 7.20501 7.37914 7.41098 7.55723 7.92338 8.21804 8.36405 8.67663 9.13894 9.68473 11.15447 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034009 B = 0.006858 C = 0.006306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.114515 B = 4081.584864 C = 4439.244410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.158 4.158 3 C 0.065 3.935 4 N -0.533 5.533 5 C 0.186 3.814 6 C -0.498 4.498 7 H 0.063 0.937 8 C 0.053 3.947 9 N -0.901 5.901 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.051 3.949 15 C 0.089 3.911 16 H 0.075 0.925 17 C -0.152 4.152 18 C -0.154 4.154 19 C 0.046 3.954 20 O -0.366 6.366 21 H 0.047 0.953 22 H 0.041 0.959 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.022 0.978 29 H 0.001 0.999 30 H 0.259 0.741 31 H 0.075 0.925 32 H 0.036 0.964 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.131 -0.437 -15.217 15.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.197 4.197 3 C -0.063 4.063 4 N -0.256 5.256 5 C 0.061 3.939 6 C -0.537 4.537 7 H 0.081 0.919 8 C -0.148 4.148 9 N -0.542 5.542 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.078 4.078 15 C 0.032 3.968 16 H 0.092 0.908 17 C -0.190 4.190 18 C -0.192 4.192 19 C -0.031 4.031 20 O -0.286 6.286 21 H 0.066 0.934 22 H 0.060 0.940 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.040 0.960 29 H 0.019 0.981 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.069 -0.007 -14.938 15.080 hybrid contribution -0.234 -0.376 0.697 0.826 sum -2.303 -0.383 -14.241 14.431 Atomic orbital electron populations 1.21622 0.96674 1.00303 1.01199 1.22105 0.95493 1.00783 1.01326 1.22168 0.88054 0.94302 1.01750 1.62277 1.07076 1.52950 1.03282 1.19809 0.95505 0.94657 0.83890 1.21218 1.40259 1.02032 0.90220 0.91904 1.24985 0.95637 0.95442 0.98698 1.69969 1.44938 1.21751 1.17525 0.86479 0.77975 0.81507 0.81705 1.19666 1.21199 1.21133 1.22266 0.99677 0.94912 0.90983 1.23115 0.81585 0.98670 0.93448 0.90752 1.23309 1.00473 1.00885 0.94352 1.23097 0.96109 1.01531 0.98473 1.23070 0.96384 1.00582 0.83024 1.88562 1.26390 1.94544 1.19089 0.93378 0.93986 0.92920 0.92964 0.91604 0.91063 0.90481 0.95985 0.98097 0.93142 0.90704 0.94571 0.90102 0.90593 0.90645 0.90838 0.92073 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.91 37.16 0.37 -1.92 16 2 C -0.16 -3.04 5.24 -26.73 -0.14 -3.18 16 3 C 0.07 1.36 4.84 -3.82 -0.02 1.35 16 4 N -0.53 -11.93 4.61 -236.08 -1.09 -13.02 16 5 C 0.19 4.94 4.61 -4.98 -0.02 4.92 16 6 C -0.50 -14.33 8.44 -34.44 -0.29 -14.62 16 7 H 0.06 1.82 7.58 -52.49 -0.40 1.42 16 8 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 9 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 10 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 14 C 0.05 0.94 4.67 -3.83 -0.02 0.92 16 15 C 0.09 1.39 3.64 -25.70 -0.09 1.29 16 16 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 17 C -0.15 -1.79 6.58 -24.42 -0.16 -1.95 16 18 C -0.15 -1.56 7.02 -24.72 -0.17 -1.73 16 19 C 0.05 0.55 7.80 37.88 0.30 0.85 16 20 O -0.37 -5.86 8.09 -35.23 -0.28 -6.14 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.05 0.96 6.42 -51.93 -0.33 0.63 16 25 H 0.07 1.44 6.12 -51.93 -0.32 1.13 16 26 H 0.07 1.63 7.16 -51.93 -0.37 1.26 16 27 H 0.08 1.54 5.47 -51.93 -0.28 1.26 16 28 H 0.02 0.62 7.74 -51.93 -0.40 0.22 16 29 H 0.00 0.04 5.95 -51.93 -0.31 -0.27 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.07 1.36 7.72 -51.93 -0.40 0.96 16 32 H 0.04 0.67 5.77 -51.93 -0.30 0.37 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.88 8.06 -51.93 -0.42 0.46 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 294.63 15.07 4.44 4.44 Total: -1.00 -30.45 294.63 -8.04 -38.49 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -6.47 Total: -1.76 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -0.35 Total: -12.64 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: -0.35 Total: -39.47 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.28 Total: -6.14 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.45 -8.04 -38.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207860993.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.842 kcal (2) G-P(sol) polarization free energy of solvation -30.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds