Wall clock time and date at job start Sun Mar 29 2020 22:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47155 * 2 1 4 4 N 1.46901 * 109.46642 * 174.40418 * 3 2 1 5 5 C 1.46904 * 111.00394 * 294.31784 * 4 3 2 6 6 C 1.50695 * 109.47090 * 289.03556 * 5 4 3 7 7 H 1.07998 * 120.00296 * 356.65788 * 6 5 4 8 8 C 1.37884 * 120.00127 * 176.66368 * 6 5 4 9 9 N 1.31513 * 119.99660 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00172 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46972 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47086 * 120.00222 * 10 8 6 13 13 H 1.48499 * 109.46943 * 240.00107 * 10 8 6 14 14 C 1.46894 * 111.00212 * 58.27898 * 4 3 2 15 15 C 1.52997 * 109.47457 * 72.98108 * 14 4 3 16 16 H 1.08993 * 110.27701 * 56.12416 * 15 14 4 17 17 C 1.54951 * 110.31136 * 178.21808 * 15 14 4 18 18 C 1.55417 * 100.89175 * 155.28439 * 17 15 14 19 19 C 1.54384 * 102.31029 * 325.99027 * 18 17 15 20 20 O 1.43239 * 107.58832 * 21.28761 * 19 18 17 21 21 H 1.09002 * 109.47148 * 59.99998 * 1 2 3 22 22 H 1.09000 * 109.47325 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46957 * 299.99889 * 1 2 3 24 24 H 1.08997 * 109.46958 * 239.99518 * 2 1 3 25 25 H 1.09002 * 109.47148 * 120.00002 * 2 1 3 26 26 H 1.08997 * 109.47127 * 54.40593 * 3 2 1 27 27 H 1.08991 * 109.47065 * 294.40409 * 3 2 1 28 28 H 1.08991 * 109.47457 * 169.02934 * 5 4 3 29 29 H 1.09000 * 109.46810 * 49.03079 * 5 4 3 30 30 H 0.96993 * 119.99884 * 179.97438 * 9 8 6 31 31 H 1.09004 * 109.47396 * 192.98053 * 14 4 3 32 32 H 1.09006 * 109.47128 * 312.97590 * 14 4 3 33 33 H 1.08993 * 111.12398 * 273.27866 * 17 15 14 34 34 H 1.09003 * 111.12242 * 37.43900 * 17 15 14 35 35 H 1.09000 * 110.87999 * 207.74971 * 18 17 15 36 36 H 1.08998 * 110.93367 * 84.25216 * 18 17 15 37 37 H 1.08997 * 109.82809 * 261.77411 * 19 18 17 38 38 H 1.09002 * 109.82553 * 140.79825 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5028 1.4445 0.1351 5 6 3.9113 0.9215 1.4456 6 6 3.5573 1.9198 2.5175 7 1 3.1263 2.8724 2.2471 8 6 3.7837 1.6171 3.8435 9 7 4.3082 0.4569 4.1728 10 14 3.3456 2.8549 5.1721 11 1 2.7749 4.0737 4.5444 12 1 2.3462 2.2582 6.0944 13 1 4.5678 3.2169 5.9338 14 6 4.1331 0.6867 -0.9540 15 6 4.0397 1.4884 -2.2538 16 1 4.4894 2.4726 -2.1237 17 6 4.7390 0.7259 -3.4074 18 6 3.9999 1.3167 -4.6404 19 6 2.5758 1.5481 -4.0908 20 8 2.6688 1.6167 -2.6630 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8932 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.5972 1.9844 0.8356 27 1 1.7608 1.9265 -0.9358 28 1 4.9877 0.7508 1.4492 29 1 3.3938 -0.0182 1.6391 30 1 4.4678 0.2441 5.1055 31 1 5.1807 0.5068 -0.7126 32 1 3.6198 -0.2670 -1.0776 33 1 5.8043 0.9537 -3.4398 34 1 4.5710 -0.3481 -3.3270 35 1 3.9866 0.6030 -5.4641 36 1 4.4531 2.2578 -4.9520 37 1 1.9289 0.7199 -4.3798 38 1 2.1766 2.4844 -4.4808 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207860993.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:37 Heat of formation + Delta-G solvation = -73.169281 kcal Electronic energy + Delta-G solvation = -16694.287979 eV Core-core repulsion = 14149.545914 eV Total energy + Delta-G solvation = -2544.742065 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.54648 -38.53227 -34.85105 -33.70671 -32.92264 -31.33717 -28.76721 -27.08033 -25.38760 -23.70863 -22.50322 -22.22903 -20.67862 -18.36253 -17.81065 -17.04450 -16.56903 -16.22684 -15.98388 -15.48215 -15.18151 -14.59004 -14.21708 -14.12138 -13.79033 -13.27255 -12.95896 -12.84245 -12.72222 -12.60542 -12.55708 -12.31605 -12.20404 -12.02451 -11.86671 -11.75450 -11.60022 -11.24516 -11.02530 -10.58527 -10.32930 -8.83228 -8.17843 -6.27220 1.40031 1.40277 1.54522 2.41311 2.98164 3.13759 3.35388 3.67171 4.03748 4.05169 4.17302 4.20759 4.33643 4.33922 4.53166 4.56636 4.69380 4.74918 4.80156 4.89270 4.93636 4.98473 5.03588 5.08860 5.12584 5.19608 5.27265 5.33120 5.35686 5.44668 5.61245 5.72568 6.11748 6.26518 6.45569 6.72750 6.90080 7.42015 8.92607 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034009 B = 0.006858 C = 0.006306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.114515 B = 4081.584864 C = 4439.244410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.149 4.149 3 C 0.072 3.928 4 N -0.544 5.544 5 C 0.203 3.797 6 C -0.517 4.517 7 H 0.056 0.944 8 C 0.001 3.999 9 N -0.935 5.935 10 Si 0.967 3.033 11 H -0.266 1.266 12 H -0.278 1.278 13 H -0.277 1.277 14 C 0.050 3.950 15 C 0.092 3.908 16 H 0.064 0.936 17 C -0.146 4.146 18 C -0.144 4.144 19 C 0.037 3.963 20 O -0.393 6.393 21 H 0.066 0.934 22 H 0.059 0.941 23 H 0.044 0.956 24 H 0.062 0.938 25 H 0.030 0.970 26 H 0.044 0.956 27 H 0.092 0.908 28 H -0.003 1.003 29 H -0.023 1.023 30 H 0.263 0.737 31 H 0.071 0.929 32 H 0.036 0.964 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.705 0.086 -16.739 16.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.188 4.188 3 C -0.056 4.056 4 N -0.266 5.266 5 C 0.077 3.923 6 C -0.555 4.555 7 H 0.074 0.926 8 C -0.196 4.196 9 N -0.576 5.576 10 Si 0.791 3.209 11 H -0.190 1.190 12 H -0.204 1.204 13 H -0.202 1.202 14 C -0.078 4.078 15 C 0.035 3.965 16 H 0.081 0.919 17 C -0.184 4.184 18 C -0.181 4.181 19 C -0.039 4.039 20 O -0.313 6.313 21 H 0.085 0.915 22 H 0.078 0.922 23 H 0.063 0.937 24 H 0.080 0.920 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.110 0.890 28 H 0.015 0.985 29 H -0.005 1.005 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.118 0.882 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.649 0.517 -16.489 16.708 hybrid contribution -0.059 -0.562 1.101 1.238 sum -2.708 -0.045 -15.387 15.624 Atomic orbital electron populations 1.21576 0.94150 1.01706 1.01752 1.21973 0.97688 0.99125 0.99975 1.22100 0.87035 0.95230 1.01211 1.62212 1.08353 1.53589 1.02486 1.19453 0.93515 0.93340 0.86038 1.21475 1.40538 1.02153 0.91380 0.92591 1.25877 0.95257 0.97410 1.01086 1.70086 1.45663 1.23568 1.18309 0.85372 0.78005 0.78994 0.78492 1.19014 1.20363 1.20230 1.22355 0.98994 0.95175 0.91289 1.22955 0.82358 0.98101 0.93112 0.91855 1.23279 1.01178 1.00568 0.93352 1.23085 0.94292 1.02604 0.98125 1.23315 0.98002 1.01656 0.80926 1.88480 1.26400 1.94657 1.21811 0.91501 0.92186 0.93654 0.91976 0.95109 0.93750 0.88965 0.98451 1.00548 0.92775 0.91073 0.94624 0.88619 0.90344 0.88215 0.89787 0.91058 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 9.91 71.98 0.71 -3.52 16 2 C -0.15 -5.76 5.24 30.59 0.16 -5.60 16 3 C 0.07 3.06 4.84 86.30 0.42 3.48 16 4 N -0.54 -25.06 4.61 -900.83 -4.15 -29.22 16 5 C 0.20 11.24 4.61 85.55 0.39 11.64 16 6 C -0.52 -30.62 8.44 25.60 0.22 -30.40 16 7 H 0.06 3.32 7.58 -2.91 -0.02 3.30 16 8 C 0.00 0.07 5.46 84.66 0.46 0.53 16 9 N -0.94 -57.64 13.29 21.45 0.28 -57.36 16 10 Si 0.97 45.78 29.54 68.60 2.03 47.80 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 14 C 0.05 1.88 4.67 86.30 0.40 2.29 16 15 C 0.09 2.78 3.64 31.26 0.11 2.90 16 16 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 17 C -0.15 -3.09 6.58 32.09 0.21 -2.87 16 18 C -0.14 -2.40 7.02 31.90 0.22 -2.18 16 19 C 0.04 0.79 7.80 72.45 0.56 1.35 16 20 O -0.39 -11.98 8.09 -148.98 -1.21 -13.18 16 21 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 22 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 23 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 24 H 0.06 2.26 6.42 -2.39 -0.02 2.24 16 25 H 0.03 1.40 6.12 -2.39 -0.01 1.38 16 26 H 0.04 2.09 7.16 -2.39 -0.02 2.07 16 27 H 0.09 3.66 5.47 -2.39 -0.01 3.64 16 28 H 0.00 -0.15 7.74 -2.39 -0.02 -0.17 16 29 H -0.02 -1.37 5.95 -2.39 -0.01 -1.39 16 30 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 31 H 0.07 2.67 7.72 -2.38 -0.02 2.65 16 32 H 0.04 1.33 5.77 -2.38 -0.01 1.32 16 33 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.08 1.64 8.06 -2.39 -0.02 1.62 16 35 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -66.78 294.63 1.84 -64.94 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 1.01 Total: 9.40 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: 3.88 Total: -22.39 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -3.87 Total: -86.58 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -1.21 Total: -13.18 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -66.78 1.84 -64.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207860993.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.230 kcal (2) G-P(sol) polarization free energy of solvation -66.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds