Wall clock time and date at job start Sun Mar 29 2020 22:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47175 * 2 1 4 4 N 1.46898 * 109.47438 * 185.67456 * 3 2 1 5 5 C 1.46896 * 111.00137 * 65.48087 * 4 3 2 6 6 C 1.50701 * 109.47025 * 64.63967 * 5 4 3 7 7 H 1.08000 * 119.99904 * 5.01586 * 6 5 4 8 8 C 1.37872 * 120.00332 * 185.01491 * 6 5 4 9 9 N 1.31523 * 119.99658 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00366 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47005 * 60.00250 * 10 8 6 12 12 H 1.48501 * 109.47111 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47283 * 300.00190 * 10 8 6 14 14 C 1.46905 * 110.99812 * 301.52778 * 4 3 2 15 15 C 1.53002 * 109.47303 * 289.62952 * 14 4 3 16 16 H 1.09000 * 110.32866 * 309.37083 * 15 14 4 17 17 C 1.54477 * 110.36980 * 187.12148 * 15 14 4 18 18 C 1.54514 * 104.06082 * 217.18868 * 17 15 14 19 19 C 1.54479 * 104.06190 * 0.02562 * 18 17 15 20 20 O 1.44418 * 104.80573 * 23.97681 * 19 18 17 21 21 H 1.08994 * 109.47162 * 299.99746 * 1 2 3 22 22 H 1.09000 * 109.46522 * 60.00317 * 1 2 3 23 23 H 1.08998 * 109.46610 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47243 * 119.99615 * 2 1 3 25 25 H 1.08998 * 109.47542 * 239.99922 * 2 1 3 26 26 H 1.08997 * 109.47086 * 305.67613 * 3 2 1 27 27 H 1.09008 * 109.47339 * 65.67247 * 3 2 1 28 28 H 1.09000 * 109.47466 * 184.64088 * 5 4 3 29 29 H 1.09001 * 109.47346 * 304.63964 * 5 4 3 30 30 H 0.97003 * 119.99783 * 179.97438 * 9 8 6 31 31 H 1.09001 * 109.47214 * 49.63108 * 14 4 3 32 32 H 1.09003 * 109.47317 * 169.62747 * 14 4 3 33 33 H 1.08997 * 110.51542 * 335.83505 * 17 15 14 34 34 H 1.09003 * 110.50939 * 98.41155 * 17 15 14 35 35 H 1.09000 * 110.50760 * 118.64624 * 18 17 15 36 36 H 1.08996 * 110.50996 * 241.22196 * 18 17 15 37 37 H 1.08998 * 110.37470 * 142.80962 * 19 18 17 38 38 H 1.09002 * 110.36832 * 265.14407 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5026 1.4448 -0.1369 5 6 3.9096 0.9180 -1.4464 6 6 3.4166 1.8381 -2.5333 7 1 2.9280 2.7659 -2.2750 8 6 3.5892 1.4954 -3.8576 9 7 4.1838 0.3652 -4.1722 10 14 2.9775 2.6355 -5.2049 11 1 3.6536 3.9522 -5.0840 12 1 3.2820 2.0421 -6.5316 13 1 1.5100 2.8184 -5.0701 14 6 4.1346 0.6904 0.9537 15 6 3.9853 1.4661 2.2639 16 1 4.3141 2.4971 2.1332 17 6 4.7936 0.7823 3.3888 18 6 3.9105 0.9564 4.6447 19 6 2.6729 1.7243 4.1299 20 8 2.6146 1.4260 2.7180 21 1 -0.3633 0.5138 0.8900 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 1.8934 -0.5138 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.5961 1.9848 -0.8348 27 1 1.7620 1.9262 0.9365 28 1 4.9968 0.8537 -1.4902 29 1 3.4810 -0.0742 -1.5881 30 1 4.3050 0.1239 -5.1039 31 1 3.6518 -0.2821 1.0501 32 1 5.1929 0.5503 0.7330 33 1 4.9378 -0.2751 3.1670 34 1 5.7550 1.2779 3.5237 35 1 3.6182 -0.0149 5.0437 36 1 4.4353 1.5375 5.4030 37 1 1.7715 1.3702 4.6300 38 1 2.7988 2.7956 4.2865 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207860997.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:39 Heat of formation + Delta-G solvation = -54.434674 kcal Electronic energy + Delta-G solvation = -16706.851680 eV Core-core repulsion = 14162.922009 eV Total energy + Delta-G solvation = -2543.929671 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.33615 -36.90481 -32.71247 -32.22355 -31.75831 -29.85744 -26.82311 -25.61839 -23.69529 -21.95577 -21.76884 -20.68441 -19.06048 -16.39195 -16.09646 -15.53294 -15.29547 -14.73835 -14.43581 -13.94971 -13.64091 -13.31285 -12.98601 -12.44756 -12.03307 -11.64519 -11.57935 -11.42101 -11.19080 -11.02450 -10.87611 -10.77699 -10.61094 -10.53163 -10.46519 -10.21744 -9.84919 -9.60531 -9.28302 -9.09107 -8.36459 -7.02331 -5.96307 -3.96603 3.37634 3.41091 3.44570 4.14646 4.47415 4.71875 4.79093 4.99105 5.14998 5.38851 5.41669 5.50764 5.69085 5.72242 5.75270 5.77152 5.84841 5.87518 6.00243 6.05617 6.13248 6.22016 6.40982 6.43569 6.59611 6.62879 6.76315 6.93435 7.12899 7.24666 7.43471 7.55505 7.89284 8.19190 8.34015 8.66544 9.11662 9.67066 11.14510 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035597 B = 0.006834 C = 0.006307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.393462 B = 4096.346844 C = 4438.317390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.157 4.157 3 C 0.066 3.934 4 N -0.536 5.536 5 C 0.188 3.812 6 C -0.502 4.502 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.901 5.901 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.055 3.945 15 C 0.083 3.917 16 H 0.074 0.926 17 C -0.151 4.151 18 C -0.153 4.153 19 C 0.040 3.960 20 O -0.360 6.360 21 H 0.047 0.953 22 H 0.051 0.949 23 H 0.041 0.959 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.022 0.978 29 H 0.001 0.999 30 H 0.260 0.740 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.903 0.148 15.077 15.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.195 4.195 3 C -0.062 4.062 4 N -0.259 5.259 5 C 0.063 3.937 6 C -0.541 4.541 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.541 5.541 10 Si 0.724 3.276 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.074 4.074 15 C 0.025 3.975 16 H 0.092 0.908 17 C -0.189 4.189 18 C -0.191 4.191 19 C -0.037 4.037 20 O -0.279 6.279 21 H 0.066 0.934 22 H 0.070 0.930 23 H 0.060 0.940 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.040 0.960 29 H 0.019 0.981 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.854 0.491 14.796 14.920 hybrid contribution -0.311 -0.332 -0.713 0.846 sum -2.165 0.159 14.083 14.250 Atomic orbital electron populations 1.21615 0.96747 1.00275 1.01111 1.22079 0.95454 1.00636 1.01377 1.22139 0.88036 0.94525 1.01542 1.62327 1.07197 1.53014 1.03335 1.19761 0.95686 0.94441 0.83783 1.21126 1.37451 1.05470 0.90049 0.92007 1.24974 0.95593 0.95333 0.98725 1.69956 1.43489 1.22573 1.18045 0.86592 0.79250 0.80941 0.80811 1.20229 1.21443 1.20314 1.22160 0.99661 0.95174 0.90383 1.23130 0.81346 0.99500 0.93553 0.90810 1.22970 0.99168 1.02100 0.94704 1.22904 0.96948 1.01156 0.98117 1.23340 0.98076 0.98572 0.83702 1.89263 1.26013 1.91685 1.20900 0.93425 0.92968 0.94017 0.92869 0.91589 0.90833 0.91019 0.95959 0.98143 0.93003 0.94381 0.90630 0.90833 0.90753 0.91148 0.91072 0.89809 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.91 37.16 0.37 -1.97 16 2 C -0.16 -3.06 5.22 -26.73 -0.14 -3.20 16 3 C 0.07 1.38 4.72 -3.82 -0.02 1.36 16 4 N -0.54 -11.95 4.68 -236.06 -1.10 -13.05 16 5 C 0.19 4.98 4.54 -4.98 -0.02 4.96 16 6 C -0.50 -14.34 8.31 -34.44 -0.29 -14.63 16 7 H 0.06 1.76 7.24 -52.49 -0.38 1.38 16 8 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 10 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.06 1.02 4.49 -3.82 -0.02 1.00 16 15 C 0.08 1.28 3.37 -25.96 -0.09 1.19 16 16 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 17 C -0.15 -1.82 6.63 -25.16 -0.17 -1.99 16 18 C -0.15 -1.58 7.09 -25.16 -0.18 -1.76 16 19 C 0.04 0.47 7.63 37.93 0.29 0.76 16 20 O -0.36 -5.70 8.65 -35.23 -0.30 -6.01 16 21 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 1.00 6.48 -51.93 -0.34 0.67 16 25 H 0.07 1.48 6.20 -51.93 -0.32 1.16 16 26 H 0.07 1.69 6.73 -51.93 -0.35 1.34 16 27 H 0.07 1.43 5.67 -51.92 -0.29 1.13 16 28 H 0.02 0.63 7.91 -51.93 -0.41 0.22 16 29 H 0.00 0.02 6.15 -51.93 -0.32 -0.30 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.04 0.72 5.88 -51.93 -0.31 0.41 16 32 H 0.08 1.37 7.86 -51.93 -0.41 0.96 16 33 H 0.07 0.88 7.87 -51.93 -0.41 0.47 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 294.42 15.07 4.44 4.44 Total: -1.00 -30.19 294.42 -8.09 -38.27 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -6.47 Total: -1.51 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -0.36 Total: -12.80 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: -0.37 Total: -39.41 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -0.30 Total: -6.01 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.19 -8.09 -38.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207860997.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.161 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds