Wall clock time and date at job start Sun Mar 29 2020 22:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47175 * 2 1 4 4 N 1.46898 * 109.47438 * 185.67456 * 3 2 1 5 5 C 1.46896 * 111.00137 * 65.48087 * 4 3 2 6 6 C 1.50701 * 109.47025 * 64.63967 * 5 4 3 7 7 H 1.08000 * 119.99904 * 5.01586 * 6 5 4 8 8 C 1.37872 * 120.00332 * 185.01491 * 6 5 4 9 9 N 1.31523 * 119.99658 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00366 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47005 * 60.00250 * 10 8 6 12 12 H 1.48501 * 109.47111 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47283 * 300.00190 * 10 8 6 14 14 C 1.46905 * 110.99812 * 301.52778 * 4 3 2 15 15 C 1.53002 * 109.47303 * 289.62952 * 14 4 3 16 16 H 1.09000 * 110.32866 * 309.37083 * 15 14 4 17 17 C 1.54477 * 110.36980 * 187.12148 * 15 14 4 18 18 C 1.54514 * 104.06082 * 217.18868 * 17 15 14 19 19 C 1.54479 * 104.06190 * 0.02562 * 18 17 15 20 20 O 1.44418 * 104.80573 * 23.97681 * 19 18 17 21 21 H 1.08994 * 109.47162 * 299.99746 * 1 2 3 22 22 H 1.09000 * 109.46522 * 60.00317 * 1 2 3 23 23 H 1.08998 * 109.46610 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47243 * 119.99615 * 2 1 3 25 25 H 1.08998 * 109.47542 * 239.99922 * 2 1 3 26 26 H 1.08997 * 109.47086 * 305.67613 * 3 2 1 27 27 H 1.09008 * 109.47339 * 65.67247 * 3 2 1 28 28 H 1.09000 * 109.47466 * 184.64088 * 5 4 3 29 29 H 1.09001 * 109.47346 * 304.63964 * 5 4 3 30 30 H 0.97003 * 119.99783 * 179.97438 * 9 8 6 31 31 H 1.09001 * 109.47214 * 49.63108 * 14 4 3 32 32 H 1.09003 * 109.47317 * 169.62747 * 14 4 3 33 33 H 1.08997 * 110.51542 * 335.83505 * 17 15 14 34 34 H 1.09003 * 110.50939 * 98.41155 * 17 15 14 35 35 H 1.09000 * 110.50760 * 118.64624 * 18 17 15 36 36 H 1.08996 * 110.50996 * 241.22196 * 18 17 15 37 37 H 1.08998 * 110.37470 * 142.80962 * 19 18 17 38 38 H 1.09002 * 110.36832 * 265.14407 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5026 1.4448 -0.1369 5 6 3.9096 0.9180 -1.4464 6 6 3.4166 1.8381 -2.5333 7 1 2.9280 2.7659 -2.2750 8 6 3.5892 1.4954 -3.8576 9 7 4.1838 0.3652 -4.1722 10 14 2.9775 2.6355 -5.2049 11 1 3.6536 3.9522 -5.0840 12 1 3.2820 2.0421 -6.5316 13 1 1.5100 2.8184 -5.0701 14 6 4.1346 0.6904 0.9537 15 6 3.9853 1.4661 2.2639 16 1 4.3141 2.4971 2.1332 17 6 4.7936 0.7823 3.3888 18 6 3.9105 0.9564 4.6447 19 6 2.6729 1.7243 4.1299 20 8 2.6146 1.4260 2.7180 21 1 -0.3633 0.5138 0.8900 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 1.8934 -0.5138 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.5961 1.9848 -0.8348 27 1 1.7620 1.9262 0.9365 28 1 4.9968 0.8537 -1.4902 29 1 3.4810 -0.0742 -1.5881 30 1 4.3050 0.1239 -5.1039 31 1 3.6518 -0.2821 1.0501 32 1 5.1929 0.5503 0.7330 33 1 4.9378 -0.2751 3.1670 34 1 5.7550 1.2779 3.5237 35 1 3.6182 -0.0149 5.0437 36 1 4.4353 1.5375 5.4030 37 1 1.7715 1.3702 4.6300 38 1 2.7988 2.7956 4.2865 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207860997.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:39 Heat of formation + Delta-G solvation = -74.142683 kcal Electronic energy + Delta-G solvation = -16707.706284 eV Core-core repulsion = 14162.922009 eV Total energy + Delta-G solvation = -2544.784275 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.53696 -38.54601 -34.83572 -33.70286 -32.87931 -31.31235 -28.72682 -27.07274 -25.40735 -23.67108 -22.93466 -21.84010 -20.73638 -18.35841 -17.50098 -16.98629 -16.44959 -16.42743 -16.09065 -15.55817 -15.12841 -14.62085 -14.45612 -14.18584 -13.46681 -13.30642 -12.97902 -12.76631 -12.69813 -12.59565 -12.49544 -12.36406 -12.21925 -12.03522 -11.85050 -11.72448 -11.42909 -11.28790 -11.08243 -10.59828 -10.52742 -8.85833 -8.18210 -6.27501 1.40211 1.43519 1.51353 2.41177 3.07578 3.14102 3.33276 3.77662 3.98887 4.07995 4.19984 4.21442 4.31259 4.37199 4.55884 4.58071 4.67831 4.72830 4.79520 4.91656 4.96263 4.98380 5.02339 5.11614 5.13874 5.20936 5.26278 5.27836 5.34246 5.46545 5.59240 5.70733 6.06033 6.10027 6.41401 6.71156 6.89351 7.41634 8.92423 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035597 B = 0.006834 C = 0.006307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.393462 B = 4096.346844 C = 4438.317390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.147 4.147 3 C 0.073 3.927 4 N -0.544 5.544 5 C 0.205 3.795 6 C -0.520 4.520 7 H 0.058 0.942 8 C 0.002 3.998 9 N -0.935 5.935 10 Si 0.966 3.034 11 H -0.268 1.268 12 H -0.282 1.282 13 H -0.269 1.269 14 C 0.055 3.945 15 C 0.087 3.913 16 H 0.066 0.934 17 C -0.147 4.147 18 C -0.145 4.145 19 C 0.033 3.967 20 O -0.386 6.386 21 H 0.066 0.934 22 H 0.044 0.956 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.029 0.971 26 H 0.048 0.952 27 H 0.088 0.912 28 H -0.003 1.003 29 H -0.025 1.025 30 H 0.264 0.736 31 H 0.034 0.966 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.624 0.870 16.592 16.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.186 4.186 3 C -0.055 4.055 4 N -0.267 5.267 5 C 0.078 3.922 6 C -0.558 4.558 7 H 0.076 0.924 8 C -0.195 4.195 9 N -0.575 5.575 10 Si 0.791 3.209 11 H -0.193 1.193 12 H -0.207 1.207 13 H -0.194 1.194 14 C -0.073 4.073 15 C 0.029 3.971 16 H 0.084 0.916 17 C -0.185 4.185 18 C -0.182 4.182 19 C -0.043 4.043 20 O -0.306 6.306 21 H 0.085 0.915 22 H 0.063 0.937 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.106 0.894 28 H 0.015 0.985 29 H -0.008 1.008 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.580 1.218 16.342 16.589 hybrid contribution -0.079 -0.575 -1.109 1.252 sum -2.659 0.643 15.233 15.476 Atomic orbital electron populations 1.21568 0.94237 1.01629 1.01693 1.21947 0.97632 0.99169 0.99842 1.22069 0.87050 0.95253 1.01122 1.62259 1.08404 1.53523 1.02515 1.19403 0.93735 0.93034 0.85985 1.21403 1.37646 1.05635 0.91128 0.92384 1.25872 0.95536 0.96896 1.01223 1.70084 1.44430 1.24300 1.18727 0.85488 0.78982 0.78899 0.77573 1.19313 1.20723 1.19416 1.22239 0.99053 0.95215 0.90841 1.22964 0.82403 0.98785 0.92943 0.91641 1.22947 0.99705 1.01745 0.94110 1.22889 0.95895 1.01882 0.97563 1.23593 0.99659 0.99492 0.81595 1.89192 1.25947 1.91954 1.23506 0.91485 0.93684 0.92322 0.92091 0.95267 0.93375 0.89359 0.98451 1.00762 0.92771 0.94838 0.90866 0.90961 0.89174 0.90225 0.88737 0.88213 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 9.91 71.98 0.71 -3.61 16 2 C -0.15 -5.81 5.22 30.59 0.16 -5.65 16 3 C 0.07 3.10 4.72 86.30 0.41 3.50 16 4 N -0.54 -24.96 4.68 -900.77 -4.22 -29.17 16 5 C 0.20 11.32 4.54 85.56 0.39 11.71 16 6 C -0.52 -30.52 8.31 25.60 0.21 -30.31 16 7 H 0.06 3.38 7.24 -2.91 -0.02 3.36 16 8 C 0.00 0.14 5.46 84.65 0.46 0.61 16 9 N -0.93 -57.52 13.29 21.45 0.28 -57.23 16 10 Si 0.97 45.49 29.54 68.60 2.03 47.51 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 14 C 0.05 2.06 4.49 86.30 0.39 2.45 16 15 C 0.09 2.61 3.37 31.10 0.10 2.72 16 16 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 17 C -0.15 -3.21 6.63 31.61 0.21 -3.00 16 18 C -0.14 -2.49 7.09 31.61 0.22 -2.27 16 19 C 0.03 0.68 7.63 72.48 0.55 1.23 16 20 O -0.39 -11.59 8.65 -148.98 -1.29 -12.88 16 21 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 22 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.06 2.29 6.48 -2.39 -0.02 2.28 16 25 H 0.03 1.35 6.20 -2.39 -0.01 1.34 16 26 H 0.05 2.26 6.73 -2.39 -0.02 2.25 16 27 H 0.09 3.47 5.67 -2.38 -0.01 3.46 16 28 H 0.00 -0.15 7.91 -2.39 -0.02 -0.17 16 29 H -0.03 -1.51 6.15 -2.39 -0.01 -1.52 16 30 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 31 H 0.03 1.29 5.88 -2.39 -0.01 1.27 16 32 H 0.07 2.73 7.86 -2.39 -0.02 2.71 16 33 H 0.07 1.60 7.87 -2.39 -0.02 1.59 16 34 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.21 16 37 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -66.08 294.42 1.64 -64.44 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 1.01 Total: 9.94 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: 3.82 Total: -22.62 kcal Atomic # 7 Polarization: -82.47 SS G_CDS: -3.93 Total: -86.41 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -1.29 Total: -12.88 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -66.08 1.64 -64.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207860997.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.698 kcal (2) G-P(sol) polarization free energy of solvation -66.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds