Wall clock time and date at job start Sun Mar 29 2020 21:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46929 * 2 1 4 4 C 1.53001 * 109.46929 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46915 * 180.02562 * 4 3 2 6 6 C 1.36944 * 119.99578 * 275.30107 * 5 4 3 7 7 H 1.07997 * 119.99968 * 37.66345 * 6 5 4 8 8 C 1.38809 * 120.00187 * 217.65929 * 6 5 4 9 9 N 1.31628 * 119.99867 * 21.36351 * 8 6 5 10 10 Si 1.86796 * 120.00410 * 201.36088 * 8 6 5 11 11 H 1.48497 * 109.46895 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47157 * 119.99930 * 10 8 6 13 13 H 1.48499 * 109.47312 * 239.99947 * 10 8 6 14 14 C 1.46493 * 120.00611 * 95.30354 * 5 4 3 15 15 C 1.53000 * 109.47228 * 270.00003 * 14 5 4 16 16 H 1.08993 * 109.98883 * 58.91578 * 15 14 5 17 17 C 1.54106 * 109.87720 * 179.97438 * 15 14 5 18 18 C 1.54810 * 104.18341 * 121.45197 * 17 15 14 19 19 C 1.54999 * 102.09489 * 20.88255 * 18 17 15 20 20 O 1.43741 * 109.87870 * 297.82722 * 15 14 5 21 21 H 1.09008 * 109.47268 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47315 * 299.99504 * 1 2 3 23 23 H 1.09000 * 109.47162 * 59.99798 * 1 2 3 24 24 H 1.08999 * 109.46882 * 240.00239 * 2 1 3 25 25 H 1.09000 * 109.47162 * 120.00202 * 2 1 3 26 26 H 1.09002 * 109.46717 * 60.00130 * 3 2 1 27 27 H 1.08993 * 109.47671 * 300.00318 * 3 2 1 28 28 H 1.08999 * 109.46882 * 60.00239 * 4 3 2 29 29 H 1.09000 * 109.47162 * 300.00202 * 4 3 2 30 30 H 0.96994 * 120.00208 * 180.02562 * 9 8 6 31 31 H 1.09005 * 109.47615 * 149.99344 * 14 5 4 32 32 H 1.09006 * 109.46978 * 30.00189 * 14 5 4 33 33 H 1.08999 * 110.48722 * 240.12876 * 17 15 14 34 34 H 1.08996 * 110.48975 * 2.64635 * 17 15 14 35 35 H 1.09014 * 110.90594 * 139.07563 * 18 17 15 36 36 H 1.08994 * 110.91142 * 262.67907 * 18 17 15 37 37 H 1.08996 * 110.61789 * 81.47375 * 19 18 17 38 38 H 1.08995 * 110.61807 * 204.31659 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0582 2.8237 0.0013 6 6 4.1836 3.5061 -1.1794 7 1 3.4507 3.3717 -1.9612 8 6 5.2526 4.3704 -1.3714 9 7 6.3437 4.2388 -0.6469 10 14 5.1430 5.7204 -2.6578 11 1 3.8211 5.6560 -3.3314 12 1 5.2996 7.0434 -2.0017 13 1 6.2207 5.5355 -3.6626 14 6 4.4124 3.4749 1.2648 15 6 3.1815 4.1804 1.8376 16 1 2.3806 3.4592 1.9998 17 6 3.5437 4.8685 3.1680 18 6 3.2107 6.3609 2.9261 19 6 2.2179 6.2837 1.7383 20 8 2.7402 5.2057 0.9320 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.6766 1.9562 0.8900 27 1 1.6766 1.9564 -0.8899 28 1 3.9336 0.9286 -0.8891 29 1 3.9329 0.9288 0.8908 30 1 7.0905 4.8431 -0.7808 31 1 5.2011 4.2064 1.0880 32 1 4.7644 2.7254 1.9737 33 1 2.9378 4.4693 3.9814 34 1 4.6042 4.7427 3.3863 35 1 2.7347 6.8003 3.8029 36 1 4.1050 6.9193 2.6500 37 1 1.2143 6.0470 2.0916 38 1 2.2158 7.2189 1.1785 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207888092.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:21 Heat of formation + Delta-G solvation = -44.165144 kcal Electronic energy + Delta-G solvation = -16904.458665 eV Core-core repulsion = 14360.974314 eV Total energy + Delta-G solvation = -2543.484351 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.63546 -36.03183 -33.88667 -31.44457 -31.13762 -29.61582 -27.55067 -24.98828 -23.61470 -21.73626 -20.87194 -20.04732 -19.88989 -16.78037 -15.52214 -15.22217 -14.80186 -14.56072 -14.29192 -13.45745 -13.37608 -13.25318 -13.00925 -12.24027 -12.06394 -11.70207 -11.22838 -11.11474 -11.01746 -10.90847 -10.75641 -10.58167 -10.48867 -10.45155 -10.20245 -10.11980 -9.84250 -9.67637 -9.41394 -8.73075 -8.27451 -6.38521 -5.60577 -3.16767 3.48402 3.55691 3.61057 4.60532 4.70748 5.15064 5.28458 5.35194 5.42059 5.49381 5.58680 5.63294 5.70341 5.78170 5.94775 6.02364 6.16566 6.17433 6.19682 6.24085 6.36768 6.39522 6.44173 6.46480 6.58644 6.66625 6.72558 6.84170 6.86684 7.08730 7.28432 7.76066 7.90534 8.00646 8.70674 9.36429 10.00322 10.56562 11.40171 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.016825 B = 0.011728 C = 0.008330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.782672 B = 2386.800763 C = 3360.631577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.136 4.136 4 C 0.147 3.853 5 N -0.579 5.579 6 C -0.233 4.233 7 H 0.055 0.945 8 C 0.015 3.985 9 N -0.896 5.896 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.290 1.290 13 H -0.295 1.295 14 C 0.147 3.853 15 C 0.059 3.941 16 H 0.045 0.955 17 C -0.151 4.151 18 C -0.152 4.152 19 C 0.038 3.962 20 O -0.335 6.335 21 H 0.045 0.955 22 H 0.049 0.951 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.043 0.957 29 H 0.031 0.969 30 H 0.250 0.750 31 H 0.101 0.899 32 H 0.033 0.967 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.045 0.955 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.620 -1.349 6.780 10.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.176 4.176 4 C 0.020 3.980 5 N -0.298 5.298 6 C -0.363 4.363 7 H 0.072 0.928 8 C -0.184 4.184 9 N -0.540 5.540 10 Si 0.726 3.274 11 H -0.202 1.202 12 H -0.217 1.217 13 H -0.222 1.222 14 C 0.020 3.980 15 C -0.001 4.001 16 H 0.063 0.937 17 C -0.190 4.190 18 C -0.190 4.190 19 C -0.039 4.039 20 O -0.253 6.253 21 H 0.064 0.936 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.118 0.882 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.427 -1.293 6.513 9.963 hybrid contribution -0.189 0.902 -0.247 0.954 sum -7.616 -0.391 6.266 9.870 Atomic orbital electron populations 1.21764 0.96869 1.00478 1.01496 1.21514 0.94927 0.98534 1.01149 1.22249 0.99703 0.94132 1.01505 1.20892 0.91161 0.87350 0.98565 1.43652 1.75548 1.08031 1.02572 1.18862 1.03709 1.20236 0.93463 0.92757 1.25022 0.94277 1.01016 0.98071 1.69995 1.03335 1.37606 1.43014 0.86342 0.77247 0.82753 0.81060 1.20242 1.21688 1.22229 1.21177 0.94350 0.96314 0.86165 1.23714 0.98933 0.90102 0.87367 0.93668 1.22992 1.02257 0.95115 0.98622 1.23082 1.00228 0.97122 0.98568 1.23451 0.95713 0.92591 0.92174 1.89201 1.80165 1.27391 1.28587 0.93629 0.93229 0.93018 0.92512 0.92821 0.93173 0.92385 0.93899 0.95074 0.94005 0.88161 0.94904 0.92095 0.90708 0.91529 0.90848 0.93725 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 37.16 0.37 -1.60 16 2 C -0.12 -1.86 5.93 -26.73 -0.16 -2.02 16 3 C -0.14 -2.56 5.51 -26.73 -0.15 -2.70 16 4 C 0.15 3.18 5.72 -4.04 -0.02 3.16 16 5 N -0.58 -14.74 2.40 -173.24 -0.42 -15.16 16 6 C -0.23 -6.58 8.89 -15.06 -0.13 -6.71 16 7 H 0.05 1.57 7.92 -52.49 -0.42 1.16 16 8 C 0.01 0.43 4.95 -17.43 -0.09 0.34 16 9 N -0.90 -26.43 11.47 55.49 0.64 -25.80 16 10 Si 0.90 22.85 29.60 -169.99 -5.03 17.82 16 11 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 13 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 14 C 0.15 3.50 4.85 -4.05 -0.02 3.48 16 15 C 0.06 1.22 3.69 -26.15 -0.10 1.13 16 16 H 0.05 0.92 6.62 -51.93 -0.34 0.58 16 17 C -0.15 -2.53 6.64 -25.20 -0.17 -2.69 16 18 C -0.15 -2.37 7.15 -24.72 -0.18 -2.55 16 19 C 0.04 0.67 7.72 38.21 0.29 0.96 16 20 O -0.34 -7.63 10.58 -35.23 -0.37 -8.00 16 21 H 0.04 0.52 8.14 -51.92 -0.42 0.10 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.96 6.62 -51.93 -0.34 0.62 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.04 0.96 8.08 -51.93 -0.42 0.54 16 29 H 0.03 0.63 7.83 -51.93 -0.41 0.22 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.10 2.74 5.52 -51.93 -0.29 2.45 16 32 H 0.03 0.73 7.86 -51.93 -0.41 0.32 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.25 7.70 -51.93 -0.40 0.85 16 35 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 302.38 15.07 4.56 4.56 Total: -1.00 -30.33 302.38 -7.78 -38.11 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -6.81 Total: -2.32 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -0.35 Total: -9.21 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.22 Total: -40.95 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.37 Total: -8.00 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.03 Total: 17.82 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.33 -7.78 -38.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207888092.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.053 kcal (2) G-P(sol) polarization free energy of solvation -30.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds