Wall clock time and date at job start Sun Mar 29 2020 21:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46929 * 2 1 4 4 C 1.53001 * 109.46929 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46915 * 180.02562 * 4 3 2 6 6 C 1.36944 * 119.99578 * 275.30107 * 5 4 3 7 7 H 1.07997 * 119.99968 * 37.66345 * 6 5 4 8 8 C 1.38809 * 120.00187 * 217.65929 * 6 5 4 9 9 N 1.31628 * 119.99867 * 21.36351 * 8 6 5 10 10 Si 1.86796 * 120.00410 * 201.36088 * 8 6 5 11 11 H 1.48497 * 109.46895 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47157 * 119.99930 * 10 8 6 13 13 H 1.48499 * 109.47312 * 239.99947 * 10 8 6 14 14 C 1.46493 * 120.00611 * 95.30354 * 5 4 3 15 15 C 1.53000 * 109.47228 * 270.00003 * 14 5 4 16 16 H 1.08993 * 109.98883 * 58.91578 * 15 14 5 17 17 C 1.54106 * 109.87720 * 179.97438 * 15 14 5 18 18 C 1.54810 * 104.18341 * 121.45197 * 17 15 14 19 19 C 1.54999 * 102.09489 * 20.88255 * 18 17 15 20 20 O 1.43741 * 109.87870 * 297.82722 * 15 14 5 21 21 H 1.09008 * 109.47268 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47315 * 299.99504 * 1 2 3 23 23 H 1.09000 * 109.47162 * 59.99798 * 1 2 3 24 24 H 1.08999 * 109.46882 * 240.00239 * 2 1 3 25 25 H 1.09000 * 109.47162 * 120.00202 * 2 1 3 26 26 H 1.09002 * 109.46717 * 60.00130 * 3 2 1 27 27 H 1.08993 * 109.47671 * 300.00318 * 3 2 1 28 28 H 1.08999 * 109.46882 * 60.00239 * 4 3 2 29 29 H 1.09000 * 109.47162 * 300.00202 * 4 3 2 30 30 H 0.96994 * 120.00208 * 180.02562 * 9 8 6 31 31 H 1.09005 * 109.47615 * 149.99344 * 14 5 4 32 32 H 1.09006 * 109.46978 * 30.00189 * 14 5 4 33 33 H 1.08999 * 110.48722 * 240.12876 * 17 15 14 34 34 H 1.08996 * 110.48975 * 2.64635 * 17 15 14 35 35 H 1.09014 * 110.90594 * 139.07563 * 18 17 15 36 36 H 1.08994 * 110.91142 * 262.67907 * 18 17 15 37 37 H 1.08996 * 110.61789 * 81.47375 * 19 18 17 38 38 H 1.08995 * 110.61807 * 204.31659 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0582 2.8237 0.0013 6 6 4.1836 3.5061 -1.1794 7 1 3.4507 3.3717 -1.9612 8 6 5.2526 4.3704 -1.3714 9 7 6.3437 4.2388 -0.6469 10 14 5.1430 5.7204 -2.6578 11 1 3.8211 5.6560 -3.3314 12 1 5.2996 7.0434 -2.0017 13 1 6.2207 5.5355 -3.6626 14 6 4.4124 3.4749 1.2648 15 6 3.1815 4.1804 1.8376 16 1 2.3806 3.4592 1.9998 17 6 3.5437 4.8685 3.1680 18 6 3.2107 6.3609 2.9261 19 6 2.2179 6.2837 1.7383 20 8 2.7402 5.2057 0.9320 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.6766 1.9562 0.8900 27 1 1.6766 1.9564 -0.8899 28 1 3.9336 0.9286 -0.8891 29 1 3.9329 0.9288 0.8908 30 1 7.0905 4.8431 -0.7808 31 1 5.2011 4.2064 1.0880 32 1 4.7644 2.7254 1.9737 33 1 2.9378 4.4693 3.9814 34 1 4.6042 4.7427 3.3863 35 1 2.7347 6.8003 3.8029 36 1 4.1050 6.9193 2.6500 37 1 1.2143 6.0470 2.0916 38 1 2.2158 7.2189 1.1785 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207888092.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:20 Heat of formation + Delta-G solvation = -61.707536 kcal Electronic energy + Delta-G solvation = -16905.219361 eV Core-core repulsion = 14360.974314 eV Total energy + Delta-G solvation = -2544.245046 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.17481 -37.76761 -35.46573 -33.22881 -32.81245 -31.14561 -29.17236 -26.84505 -25.23019 -23.19094 -22.26849 -21.78726 -21.42848 -18.75073 -17.13394 -16.88189 -16.30016 -16.25086 -16.00111 -15.23211 -15.03126 -14.72630 -14.34838 -13.82486 -13.55961 -13.16758 -13.00568 -12.79539 -12.70480 -12.53230 -12.37908 -12.15756 -12.01847 -11.98867 -11.81704 -11.67307 -11.48127 -11.38048 -11.12049 -10.42787 -10.31158 -8.45511 -7.73213 -5.34316 1.42487 1.45790 1.56113 2.55622 3.21983 3.33190 3.73407 3.87347 4.03237 4.11854 4.19541 4.27479 4.38982 4.45833 4.56731 4.58177 4.77327 4.86406 4.88671 4.94618 4.95260 5.03929 5.06465 5.08047 5.12067 5.16684 5.20416 5.32267 5.44016 5.52976 5.66513 5.73195 5.84276 6.36911 6.58340 7.26778 7.96353 8.46644 9.21791 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.016825 B = 0.011728 C = 0.008330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.782672 B = 2386.800763 C = 3360.631577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C -0.120 4.120 4 C 0.144 3.856 5 N -0.597 5.597 6 C -0.234 4.234 7 H 0.039 0.961 8 C -0.030 4.030 9 N -0.921 5.921 10 Si 0.947 3.053 11 H -0.276 1.276 12 H -0.292 1.292 13 H -0.291 1.291 14 C 0.147 3.853 15 C 0.063 3.937 16 H 0.049 0.951 17 C -0.146 4.146 18 C -0.144 4.144 19 C 0.030 3.970 20 O -0.382 6.382 21 H 0.068 0.932 22 H 0.052 0.948 23 H 0.045 0.955 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.032 0.968 28 H 0.028 0.972 29 H 0.046 0.954 30 H 0.248 0.752 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.109 -1.475 8.111 12.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C -0.160 4.160 4 C 0.018 3.982 5 N -0.317 5.317 6 C -0.365 4.365 7 H 0.057 0.943 8 C -0.226 4.226 9 N -0.567 5.567 10 Si 0.777 3.223 11 H -0.201 1.201 12 H -0.219 1.219 13 H -0.218 1.218 14 C 0.021 3.979 15 C 0.003 3.997 16 H 0.067 0.933 17 C -0.184 4.184 18 C -0.182 4.182 19 C -0.047 4.047 20 O -0.301 6.301 21 H 0.087 0.913 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.124 0.876 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.937 -1.430 7.855 11.984 hybrid contribution 0.251 0.900 -0.647 1.137 sum -8.686 -0.529 7.208 11.300 Atomic orbital electron populations 1.21728 0.95090 1.02006 1.01437 1.21466 0.96449 0.95700 1.01952 1.22015 0.97285 0.96588 1.00089 1.21018 0.93009 0.85603 0.98539 1.43880 1.75999 1.09419 1.02373 1.18901 1.02910 1.20553 0.94132 0.94305 1.25574 0.94174 1.02787 1.00072 1.70100 1.03762 1.38291 1.44505 0.85527 0.77150 0.80382 0.79248 1.20059 1.21862 1.21811 1.21110 0.95079 0.95882 0.85875 1.23517 0.97243 0.90185 0.88717 0.93322 1.22964 1.02591 0.95622 0.97241 1.23058 0.99509 0.96349 0.99261 1.23717 0.97094 0.91400 0.92487 1.89134 1.80826 1.29072 1.31078 0.91309 0.92844 0.93586 0.92383 0.91365 0.93374 0.94919 0.95342 0.93554 0.94320 0.91707 0.94065 0.88895 0.91201 0.87641 0.92157 0.91476 0.89781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.91 71.98 0.71 -2.77 16 2 C -0.12 -3.33 5.93 30.59 0.18 -3.15 16 3 C -0.12 -4.45 5.51 30.59 0.17 -4.28 16 4 C 0.14 6.25 5.72 86.38 0.49 6.74 16 5 N -0.60 -30.88 2.40 -702.01 -1.69 -32.56 16 6 C -0.23 -13.55 8.89 84.03 0.75 -12.80 16 7 H 0.04 2.33 7.92 -2.91 -0.02 2.30 16 8 C -0.03 -1.75 4.95 84.86 0.42 -1.33 16 9 N -0.92 -55.65 11.47 21.65 0.25 -55.40 16 10 Si 0.95 47.85 29.60 68.60 2.03 49.88 16 11 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 12 H -0.29 -14.68 7.11 99.48 0.71 -13.98 16 13 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 14 C 0.15 7.07 4.85 86.38 0.42 7.49 16 15 C 0.06 2.56 3.69 30.97 0.11 2.67 16 16 H 0.05 1.92 6.62 -2.39 -0.02 1.90 16 17 C -0.15 -4.54 6.64 31.59 0.21 -4.33 16 18 C -0.14 -4.12 7.15 31.90 0.23 -3.89 16 19 C 0.03 0.98 7.72 72.67 0.56 1.54 16 20 O -0.38 -17.27 10.58 -148.98 -1.58 -18.84 16 21 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 22 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.04 1.14 8.14 -2.39 -0.02 1.13 16 24 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.05 1.79 6.62 -2.39 -0.02 1.78 16 27 H 0.03 1.35 8.14 -2.39 -0.02 1.34 16 28 H 0.03 1.29 8.08 -2.39 -0.02 1.27 16 29 H 0.05 1.85 7.83 -2.39 -0.02 1.83 16 30 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 31 H 0.07 3.63 5.52 -2.38 -0.01 3.62 16 32 H 0.04 1.84 7.86 -2.38 -0.02 1.82 16 33 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.07 2.24 7.70 -2.39 -0.02 2.22 16 35 H 0.11 2.21 8.14 -2.38 -0.02 2.19 16 36 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -66.36 302.38 4.27 -62.09 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 0.99 Total: 8.95 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: 4.26 Total: -14.11 kcal Atomic # 7 Polarization: -86.53 SS G_CDS: -1.44 Total: -87.96 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -1.58 Total: -18.84 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.03 Total: 49.88 kcal Total: -66.36 4.27 -62.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207888092.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.381 kcal (2) G-P(sol) polarization free energy of solvation -66.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds