Wall clock time and date at job start Sun Mar 29 2020 21:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47040 * 2 1 4 4 C 1.53000 * 109.47403 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47352 * 179.97438 * 4 3 2 6 6 C 1.36936 * 120.00407 * 269.60882 * 5 4 3 7 7 H 1.07994 * 119.99872 * 322.00405 * 6 5 4 8 8 C 1.38812 * 119.99938 * 142.00279 * 6 5 4 9 9 N 1.31611 * 120.00049 * 157.09924 * 8 6 5 10 10 Si 1.86806 * 120.00109 * 337.10054 * 8 6 5 11 11 H 1.48497 * 109.47087 * 95.69465 * 10 8 6 12 12 H 1.48497 * 109.47072 * 215.69868 * 10 8 6 13 13 H 1.48504 * 109.46849 * 335.69761 * 10 8 6 14 14 C 1.46501 * 119.99559 * 89.60879 * 5 4 3 15 15 C 1.53000 * 109.47277 * 89.99993 * 14 5 4 16 16 H 1.09004 * 110.27268 * 304.36546 * 15 14 5 17 17 C 1.54946 * 110.39709 * 182.21599 * 15 14 5 18 18 C 1.55306 * 100.94240 * 204.59699 * 17 15 14 19 19 C 1.54389 * 102.25192 * 34.13157 * 18 17 15 20 20 O 1.43232 * 107.58752 * 338.64565 * 19 18 17 21 21 H 1.09003 * 109.47017 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47016 * 299.99952 * 1 2 3 23 23 H 1.08997 * 109.47505 * 60.00047 * 1 2 3 24 24 H 1.08997 * 109.47016 * 240.00048 * 2 1 3 25 25 H 1.09003 * 109.47123 * 119.99832 * 2 1 3 26 26 H 1.09004 * 109.47540 * 59.99992 * 3 2 1 27 27 H 1.09003 * 109.47026 * 299.99892 * 3 2 1 28 28 H 1.09004 * 109.46712 * 59.99567 * 4 3 2 29 29 H 1.08997 * 109.47390 * 300.00106 * 4 3 2 30 30 H 0.97007 * 120.00012 * 180.02562 * 9 8 6 31 31 H 1.08999 * 109.47731 * 330.00252 * 14 5 4 32 32 H 1.08997 * 109.47378 * 210.00215 * 14 5 4 33 33 H 1.08994 * 111.12699 * 86.67728 * 17 15 14 34 34 H 1.08999 * 111.12452 * 322.51293 * 17 15 14 35 35 H 1.08995 * 110.85044 * 275.94106 * 18 17 15 36 36 H 1.09000 * 110.84821 * 152.31854 * 18 17 15 37 37 H 1.09002 * 109.82612 * 98.15929 * 19 18 17 38 38 H 1.08996 * 109.82724 * 219.12814 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2946 3.4660 -1.1861 7 1 4.7204 2.9245 -2.0178 8 6 3.9869 4.8130 -1.3194 9 7 4.5921 5.5387 -2.2354 10 14 2.7138 5.5956 -0.1985 11 1 3.3970 6.2443 0.9494 12 1 1.9456 6.6147 -0.9577 13 1 1.7869 4.5498 0.3039 14 6 4.2937 3.5180 1.2685 15 6 5.7356 3.2788 1.7208 16 1 5.9390 2.2099 1.7850 17 6 5.9919 3.9582 3.0896 18 6 7.5307 4.1609 3.0346 19 6 7.7714 4.4372 1.5348 20 8 6.6538 3.9074 0.8123 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.6766 1.9563 -0.8900 28 1 3.9337 0.9285 -0.8891 29 1 3.9330 0.9289 0.8908 30 1 4.3773 6.4802 -2.3283 31 1 3.6078 3.1360 2.0246 32 1 4.1276 4.5868 1.1341 33 1 5.7114 3.3013 3.9129 34 1 5.4720 4.9138 3.1573 35 1 8.0525 3.2579 3.3513 36 1 7.8312 5.0163 3.6397 37 1 7.8465 5.5111 1.3641 38 1 8.6883 3.9450 1.2107 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207888099.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:22 Heat of formation + Delta-G solvation = -37.821408 kcal Electronic energy + Delta-G solvation = -16776.409943 eV Core-core repulsion = 14233.200677 eV Total energy + Delta-G solvation = -2543.209266 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.78147 -36.29052 -33.99323 -31.61903 -31.38621 -29.89706 -27.85180 -25.07149 -23.88446 -21.45160 -20.95255 -20.79762 -19.68118 -16.83813 -16.14027 -15.36535 -14.99351 -14.72980 -14.17413 -13.86318 -13.51017 -13.14830 -12.69760 -12.46406 -12.38204 -12.04522 -11.88174 -11.39083 -11.23163 -10.87137 -10.81084 -10.71511 -10.61971 -10.51381 -10.40546 -10.14673 -9.80058 -9.71780 -9.39562 -8.73025 -8.30945 -6.67309 -5.80963 -3.20043 3.39276 3.54191 3.59077 4.47982 4.67545 4.90288 4.99876 5.18926 5.33536 5.38223 5.47596 5.57964 5.64574 5.70411 5.73981 5.92745 5.95631 6.03150 6.14338 6.15617 6.19134 6.25553 6.31397 6.33952 6.37472 6.40868 6.49296 6.56765 6.64941 6.87718 6.97277 7.14542 7.91528 8.23622 8.56770 9.14024 9.89850 10.28300 11.35578 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020757 B = 0.010328 C = 0.008105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.649334 B = 2710.519130 C = 3453.826973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.141 4.141 4 C 0.151 3.849 5 N -0.600 5.600 6 C -0.249 4.249 7 H 0.075 0.925 8 C 0.042 3.958 9 N -0.899 5.899 10 Si 0.868 3.132 11 H -0.289 1.289 12 H -0.304 1.304 13 H -0.268 1.268 14 C 0.137 3.863 15 C 0.067 3.933 16 H 0.057 0.943 17 C -0.156 4.156 18 C -0.154 4.154 19 C 0.045 3.955 20 O -0.337 6.337 21 H 0.045 0.955 22 H 0.048 0.952 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.034 0.966 30 H 0.259 0.741 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.375 -6.422 10.537 12.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.181 4.181 4 C 0.025 3.975 5 N -0.321 5.321 6 C -0.377 4.377 7 H 0.092 0.908 8 C -0.157 4.157 9 N -0.540 5.540 10 Si 0.699 3.301 11 H -0.217 1.217 12 H -0.232 1.232 13 H -0.193 1.193 14 C 0.011 3.989 15 C 0.007 3.993 16 H 0.075 0.925 17 C -0.195 4.195 18 C -0.192 4.192 19 C -0.032 4.032 20 O -0.255 6.255 21 H 0.065 0.935 22 H 0.068 0.932 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.386 -6.259 10.189 11.964 hybrid contribution -0.614 0.700 0.932 1.317 sum -1.000 -5.560 11.121 12.473 Atomic orbital electron populations 1.21770 0.96786 1.00564 1.01618 1.21505 0.95079 0.98244 1.01186 1.22255 0.99393 0.94580 1.01863 1.20924 0.91028 0.86683 0.98886 1.44057 1.74938 1.11188 1.01870 1.18616 1.35308 0.93240 0.90566 0.90784 1.25348 0.97721 0.96663 0.96007 1.69894 1.41079 1.06616 1.36447 0.87060 0.84049 0.78808 0.80232 1.21743 1.23245 1.19312 1.21387 0.91218 0.97924 0.88379 1.23765 0.93416 0.95587 0.86521 0.92535 1.23350 0.95590 1.01745 0.98799 1.23090 0.96618 1.01811 0.97642 1.23068 0.91214 0.98766 0.90171 1.88816 1.31450 1.74975 1.30275 0.93542 0.93239 0.92868 0.92329 0.92827 0.93386 0.91696 0.93068 0.94758 0.93143 0.93327 0.92218 0.90737 0.90756 0.91197 0.90901 0.92202 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 37.16 0.37 -1.59 16 2 C -0.12 -1.78 5.93 -26.73 -0.16 -1.94 16 3 C -0.14 -2.60 5.54 -26.73 -0.15 -2.75 16 4 C 0.15 3.04 5.67 -4.04 -0.02 3.01 16 5 N -0.60 -14.53 2.06 -173.24 -0.36 -14.89 16 6 C -0.25 -7.14 9.52 -15.06 -0.14 -7.29 16 7 H 0.07 2.33 8.06 -52.49 -0.42 1.90 16 8 C 0.04 1.26 5.29 -17.43 -0.09 1.17 16 9 N -0.90 -28.40 13.97 55.49 0.78 -27.62 16 10 Si 0.87 22.80 25.10 -169.99 -4.27 18.53 16 11 H -0.29 -7.44 6.68 56.52 0.38 -7.06 16 12 H -0.30 -8.13 7.11 56.52 0.40 -7.73 16 13 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.14 3.04 4.26 -4.04 -0.02 3.03 16 15 C 0.07 1.34 3.68 -25.70 -0.09 1.25 16 16 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 17 C -0.16 -2.45 6.57 -24.48 -0.16 -2.61 16 18 C -0.15 -2.17 7.02 -24.78 -0.17 -2.34 16 19 C 0.05 0.80 7.79 37.89 0.30 1.10 16 20 O -0.34 -7.79 10.64 -35.23 -0.37 -8.16 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 28 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 29 H 0.03 0.61 8.08 -51.93 -0.42 0.19 16 30 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 31 H 0.05 0.95 8.07 -51.93 -0.42 0.53 16 32 H 0.06 1.48 3.38 -51.93 -0.18 1.31 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.20 8.06 -51.93 -0.42 0.78 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 301.68 15.07 4.55 4.55 Total: -1.00 -32.08 301.68 -6.95 -39.04 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -6.93 Total: -2.48 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -0.35 Total: -8.96 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.42 Total: -42.51 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -0.37 Total: -8.16 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.27 Total: 18.53 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.08 -6.95 -39.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207888099.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.215 kcal (2) G-P(sol) polarization free energy of solvation -32.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds