Wall clock time and date at job start Sun Mar 29 2020 21:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47040 * 2 1 4 4 C 1.53000 * 109.47403 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47352 * 179.97438 * 4 3 2 6 6 C 1.36936 * 120.00407 * 269.60882 * 5 4 3 7 7 H 1.07994 * 119.99872 * 322.00405 * 6 5 4 8 8 C 1.38812 * 119.99938 * 142.00279 * 6 5 4 9 9 N 1.31611 * 120.00049 * 157.09924 * 8 6 5 10 10 Si 1.86806 * 120.00109 * 337.10054 * 8 6 5 11 11 H 1.48497 * 109.47087 * 95.69465 * 10 8 6 12 12 H 1.48497 * 109.47072 * 215.69868 * 10 8 6 13 13 H 1.48504 * 109.46849 * 335.69761 * 10 8 6 14 14 C 1.46501 * 119.99559 * 89.60879 * 5 4 3 15 15 C 1.53000 * 109.47277 * 89.99993 * 14 5 4 16 16 H 1.09004 * 110.27268 * 304.36546 * 15 14 5 17 17 C 1.54946 * 110.39709 * 182.21599 * 15 14 5 18 18 C 1.55306 * 100.94240 * 204.59699 * 17 15 14 19 19 C 1.54389 * 102.25192 * 34.13157 * 18 17 15 20 20 O 1.43232 * 107.58752 * 338.64565 * 19 18 17 21 21 H 1.09003 * 109.47017 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47016 * 299.99952 * 1 2 3 23 23 H 1.08997 * 109.47505 * 60.00047 * 1 2 3 24 24 H 1.08997 * 109.47016 * 240.00048 * 2 1 3 25 25 H 1.09003 * 109.47123 * 119.99832 * 2 1 3 26 26 H 1.09004 * 109.47540 * 59.99992 * 3 2 1 27 27 H 1.09003 * 109.47026 * 299.99892 * 3 2 1 28 28 H 1.09004 * 109.46712 * 59.99567 * 4 3 2 29 29 H 1.08997 * 109.47390 * 300.00106 * 4 3 2 30 30 H 0.97007 * 120.00012 * 180.02562 * 9 8 6 31 31 H 1.08999 * 109.47731 * 330.00252 * 14 5 4 32 32 H 1.08997 * 109.47378 * 210.00215 * 14 5 4 33 33 H 1.08994 * 111.12699 * 86.67728 * 17 15 14 34 34 H 1.08999 * 111.12452 * 322.51293 * 17 15 14 35 35 H 1.08995 * 110.85044 * 275.94106 * 18 17 15 36 36 H 1.09000 * 110.84821 * 152.31854 * 18 17 15 37 37 H 1.09002 * 109.82612 * 98.15929 * 19 18 17 38 38 H 1.08996 * 109.82724 * 219.12814 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2946 3.4660 -1.1861 7 1 4.7204 2.9245 -2.0178 8 6 3.9869 4.8130 -1.3194 9 7 4.5921 5.5387 -2.2354 10 14 2.7138 5.5956 -0.1985 11 1 3.3970 6.2443 0.9494 12 1 1.9456 6.6147 -0.9577 13 1 1.7869 4.5498 0.3039 14 6 4.2937 3.5180 1.2685 15 6 5.7356 3.2788 1.7208 16 1 5.9390 2.2099 1.7850 17 6 5.9919 3.9582 3.0896 18 6 7.5307 4.1609 3.0346 19 6 7.7714 4.4372 1.5348 20 8 6.6538 3.9074 0.8123 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.6766 1.9563 -0.8900 28 1 3.9337 0.9285 -0.8891 29 1 3.9330 0.9289 0.8908 30 1 4.3773 6.4802 -2.3283 31 1 3.6078 3.1360 2.0246 32 1 4.1276 4.5868 1.1341 33 1 5.7114 3.3013 3.9129 34 1 5.4720 4.9138 3.1573 35 1 8.0525 3.2579 3.3513 36 1 7.8312 5.0163 3.6397 37 1 7.8465 5.5111 1.3641 38 1 8.6883 3.9450 1.2107 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207888099.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:22 Heat of formation + Delta-G solvation = -58.545738 kcal Electronic energy + Delta-G solvation = -16777.308617 eV Core-core repulsion = 14233.200677 eV Total energy + Delta-G solvation = -2544.107940 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.27281 -37.98893 -35.48259 -33.62534 -32.90243 -31.35043 -29.43414 -26.82104 -25.52838 -22.93125 -22.28622 -22.19631 -21.35568 -18.82027 -17.76094 -17.03366 -16.54661 -16.23125 -15.87693 -15.42409 -14.95413 -14.85786 -14.25065 -14.05599 -13.88161 -13.54794 -13.40279 -13.04417 -12.73656 -12.46044 -12.32550 -12.19226 -12.01320 -11.83180 -11.74290 -11.68461 -11.59994 -11.38464 -11.26667 -10.58049 -10.24392 -8.66332 -8.10245 -5.45196 1.28233 1.38689 1.49984 2.47733 3.03375 3.15161 3.50378 3.68267 3.99932 4.07196 4.16481 4.25750 4.27574 4.42070 4.44503 4.56530 4.59353 4.73977 4.79615 4.85711 4.87801 4.91107 4.99839 5.03851 5.06828 5.09398 5.16173 5.19764 5.34293 5.41377 5.51161 5.62614 6.02868 6.24782 6.48468 7.09165 7.73798 8.14043 9.10958 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020757 B = 0.010328 C = 0.008105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.649334 B = 2710.519130 C = 3453.826973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.132 4.132 4 C 0.148 3.852 5 N -0.613 5.613 6 C -0.231 4.231 7 H 0.028 0.972 8 C -0.016 4.016 9 N -0.952 5.952 10 Si 0.936 3.064 11 H -0.280 1.280 12 H -0.313 1.313 13 H -0.252 1.252 14 C 0.130 3.870 15 C 0.061 3.939 16 H 0.065 0.935 17 C -0.148 4.148 18 C -0.139 4.139 19 C 0.032 3.968 20 O -0.393 6.393 21 H 0.069 0.931 22 H 0.053 0.947 23 H 0.042 0.958 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.048 0.952 27 H 0.032 0.968 28 H 0.037 0.963 29 H 0.066 0.934 30 H 0.257 0.743 31 H 0.082 0.918 32 H 0.032 0.968 33 H 0.111 0.889 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.050 0.950 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.093 -7.801 13.937 16.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.172 4.172 4 C 0.023 3.977 5 N -0.335 5.335 6 C -0.361 4.361 7 H 0.046 0.954 8 C -0.211 4.211 9 N -0.597 5.597 10 Si 0.765 3.235 11 H -0.208 1.208 12 H -0.242 1.242 13 H -0.176 1.176 14 C 0.005 3.995 15 C 0.001 3.999 16 H 0.083 0.917 17 C -0.186 4.186 18 C -0.176 4.176 19 C -0.045 4.045 20 O -0.312 6.312 21 H 0.088 0.912 22 H 0.072 0.928 23 H 0.061 0.939 24 H 0.077 0.923 25 H 0.093 0.907 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.050 0.950 33 H 0.129 0.871 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.116 0.884 37 H 0.068 0.932 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.115 -7.677 13.636 15.688 hybrid contribution -0.293 1.026 -0.169 1.080 sum -1.407 -6.651 13.467 15.085 Atomic orbital electron populations 1.21756 0.95475 1.02030 1.01355 1.21451 0.96199 0.95408 1.02303 1.22108 0.97755 0.97098 1.00265 1.21064 0.92317 0.84544 0.99769 1.44178 1.75685 1.12410 1.01207 1.18401 1.33349 0.93082 0.91267 0.95441 1.25929 0.99673 0.97388 0.98154 1.70037 1.43255 1.06871 1.39501 0.85963 0.81280 0.77895 0.78353 1.20762 1.24239 1.17590 1.21521 0.93825 0.96169 0.88000 1.23779 0.91362 0.96339 0.88381 0.91729 1.23325 0.96545 1.01624 0.97138 1.23060 0.95735 1.03977 0.94832 1.23295 0.90151 0.98161 0.92858 1.88753 1.33490 1.75608 1.33397 0.91229 0.92826 0.93880 0.92255 0.90672 0.93275 0.94940 0.94427 0.91562 0.93457 0.89982 0.94971 0.87098 0.91529 0.88885 0.88403 0.93158 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.91 71.98 0.71 -2.75 16 2 C -0.12 -3.05 5.93 30.59 0.18 -2.87 16 3 C -0.13 -4.67 5.54 30.59 0.17 -4.51 16 4 C 0.15 5.78 5.67 86.38 0.49 6.27 16 5 N -0.61 -29.57 2.06 -702.02 -1.44 -31.02 16 6 C -0.23 -13.75 9.52 84.03 0.80 -12.95 16 7 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 8 C -0.02 -0.98 5.29 84.86 0.45 -0.53 16 9 N -0.95 -62.94 13.97 21.65 0.30 -62.64 16 10 Si 0.94 48.32 25.10 68.60 1.72 50.04 16 11 H -0.28 -13.89 6.68 99.48 0.66 -13.23 16 12 H -0.31 -16.46 7.11 99.48 0.71 -15.76 16 13 H -0.25 -12.15 7.11 99.48 0.71 -11.45 16 14 C 0.13 5.54 4.26 86.38 0.37 5.91 16 15 C 0.06 2.30 3.68 31.26 0.12 2.42 16 16 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 17 C -0.15 -4.08 6.57 32.05 0.21 -3.86 16 18 C -0.14 -3.40 7.02 31.86 0.22 -3.17 16 19 C 0.03 1.11 7.79 72.45 0.56 1.67 16 20 O -0.39 -18.25 10.64 -148.98 -1.59 -19.83 16 21 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 22 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.04 1.55 8.04 -2.39 -0.02 1.53 16 29 H 0.07 2.17 8.08 -2.39 -0.02 2.15 16 30 H 0.26 16.15 8.31 -92.70 -0.77 15.38 16 31 H 0.08 2.90 8.07 -2.39 -0.02 2.88 16 32 H 0.03 1.56 3.38 -2.39 -0.01 1.55 16 33 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.07 1.94 8.06 -2.39 -0.02 1.92 16 35 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -73.36 301.68 4.22 -69.14 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 0.95 Total: 8.70 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: 4.28 Total: -14.38 kcal Atomic # 7 Polarization: -92.51 SS G_CDS: -1.14 Total: -93.66 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -1.59 Total: -19.83 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 1.72 Total: 50.04 kcal Total: -73.36 4.22 -69.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207888099.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.590 kcal (2) G-P(sol) polarization free energy of solvation -73.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds