Wall clock time and date at job start Sun Mar 29 2020 21:36:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52998 * 109.47040 * 2 1
4 4 C 1.53000 * 109.47403 * 179.97438 * 3 2 1
5 5 N 1.46497 * 109.47352 * 179.97438 * 4 3 2
6 6 C 1.36936 * 120.00407 * 269.60882 * 5 4 3
7 7 H 1.07994 * 119.99872 * 322.00405 * 6 5 4
8 8 C 1.38812 * 119.99938 * 142.00279 * 6 5 4
9 9 N 1.31611 * 120.00049 * 157.09924 * 8 6 5
10 10 Si 1.86806 * 120.00109 * 337.10054 * 8 6 5
11 11 H 1.48497 * 109.47087 * 95.69465 * 10 8 6
12 12 H 1.48497 * 109.47072 * 215.69868 * 10 8 6
13 13 H 1.48504 * 109.46849 * 335.69761 * 10 8 6
14 14 C 1.46501 * 119.99559 * 89.60879 * 5 4 3
15 15 C 1.53000 * 109.47277 * 89.99993 * 14 5 4
16 16 H 1.09004 * 110.27268 * 304.36546 * 15 14 5
17 17 C 1.54946 * 110.39709 * 182.21599 * 15 14 5
18 18 C 1.55306 * 100.94240 * 204.59699 * 17 15 14
19 19 C 1.54389 * 102.25192 * 34.13157 * 18 17 15
20 20 O 1.43232 * 107.58752 * 338.64565 * 19 18 17
21 21 H 1.09003 * 109.47017 * 180.02562 * 1 2 3
22 22 H 1.08997 * 109.47016 * 299.99952 * 1 2 3
23 23 H 1.08997 * 109.47505 * 60.00047 * 1 2 3
24 24 H 1.08997 * 109.47016 * 240.00048 * 2 1 3
25 25 H 1.09003 * 109.47123 * 119.99832 * 2 1 3
26 26 H 1.09004 * 109.47540 * 59.99992 * 3 2 1
27 27 H 1.09003 * 109.47026 * 299.99892 * 3 2 1
28 28 H 1.09004 * 109.46712 * 59.99567 * 4 3 2
29 29 H 1.08997 * 109.47390 * 300.00106 * 4 3 2
30 30 H 0.97007 * 120.00012 * 180.02562 * 9 8 6
31 31 H 1.08999 * 109.47731 * 330.00252 * 14 5 4
32 32 H 1.08997 * 109.47378 * 210.00215 * 14 5 4
33 33 H 1.08994 * 111.12699 * 86.67728 * 17 15 14
34 34 H 1.08999 * 111.12452 * 322.51293 * 17 15 14
35 35 H 1.08995 * 110.85044 * 275.94106 * 18 17 15
36 36 H 1.09000 * 110.84821 * 152.31854 * 18 17 15
37 37 H 1.09002 * 109.82612 * 98.15929 * 19 18 17
38 38 H 1.08996 * 109.82724 * 219.12814 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4426 0.0006
5 7 4.0583 2.8238 0.0000
6 6 4.2946 3.4660 -1.1861
7 1 4.7204 2.9245 -2.0178
8 6 3.9869 4.8130 -1.3194
9 7 4.5921 5.5387 -2.2354
10 14 2.7138 5.5956 -0.1985
11 1 3.3970 6.2443 0.9494
12 1 1.9456 6.6147 -0.9577
13 1 1.7869 4.5498 0.3039
14 6 4.2937 3.5180 1.2685
15 6 5.7356 3.2788 1.7208
16 1 5.9390 2.2099 1.7850
17 6 5.9919 3.9582 3.0896
18 6 7.5307 4.1609 3.0346
19 6 7.7714 4.4372 1.5348
20 8 6.6538 3.9074 0.8123
21 1 -0.3633 -1.0277 0.0005
22 1 -0.3633 0.5138 0.8900
23 1 -0.3634 0.5138 -0.8899
24 1 1.8933 -0.5138 -0.8900
25 1 1.8934 -0.5138 0.8900
26 1 1.6767 1.9564 0.8900
27 1 1.6766 1.9563 -0.8900
28 1 3.9337 0.9285 -0.8891
29 1 3.9330 0.9289 0.8908
30 1 4.3773 6.4802 -2.3283
31 1 3.6078 3.1360 2.0246
32 1 4.1276 4.5868 1.1341
33 1 5.7114 3.3013 3.9129
34 1 5.4720 4.9138 3.1573
35 1 8.0525 3.2579 3.3513
36 1 7.8312 5.0163 3.6397
37 1 7.8465 5.5111 1.3641
38 1 8.6883 3.9450 1.2107
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001207888099.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:36:22
Heat of formation + Delta-G solvation = -58.545738 kcal
Electronic energy + Delta-G solvation = -16777.308617 eV
Core-core repulsion = 14233.200677 eV
Total energy + Delta-G solvation = -2544.107940 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.27281 -37.98893 -35.48259 -33.62534 -32.90243 -31.35043 -29.43414 -26.82104
-25.52838 -22.93125 -22.28622 -22.19631 -21.35568 -18.82027 -17.76094 -17.03366
-16.54661 -16.23125 -15.87693 -15.42409 -14.95413 -14.85786 -14.25065 -14.05599
-13.88161 -13.54794 -13.40279 -13.04417 -12.73656 -12.46044 -12.32550 -12.19226
-12.01320 -11.83180 -11.74290 -11.68461 -11.59994 -11.38464 -11.26667 -10.58049
-10.24392 -8.66332 -8.10245 -5.45196 1.28233 1.38689 1.49984 2.47733
3.03375 3.15161 3.50378 3.68267 3.99932 4.07196 4.16481 4.25750
4.27574 4.42070 4.44503 4.56530 4.59353 4.73977 4.79615 4.85711
4.87801 4.91107 4.99839 5.03851 5.06828 5.09398 5.16173 5.19764
5.34293 5.41377 5.51161 5.62614 6.02868 6.24782 6.48468 7.09165
7.73798 8.14043 9.10958
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.020757 B = 0.010328 C = 0.008105
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1348.649334 B = 2710.519130 C = 3453.826973
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.115 4.115
3 C -0.132 4.132
4 C 0.148 3.852
5 N -0.613 5.613
6 C -0.231 4.231
7 H 0.028 0.972
8 C -0.016 4.016
9 N -0.952 5.952
10 Si 0.936 3.064
11 H -0.280 1.280
12 H -0.313 1.313
13 H -0.252 1.252
14 C 0.130 3.870
15 C 0.061 3.939
16 H 0.065 0.935
17 C -0.148 4.148
18 C -0.139 4.139
19 C 0.032 3.968
20 O -0.393 6.393
21 H 0.069 0.931
22 H 0.053 0.947
23 H 0.042 0.958
24 H 0.059 0.941
25 H 0.075 0.925
26 H 0.048 0.952
27 H 0.032 0.968
28 H 0.037 0.963
29 H 0.066 0.934
30 H 0.257 0.743
31 H 0.082 0.918
32 H 0.032 0.968
33 H 0.111 0.889
34 H 0.066 0.934
35 H 0.093 0.907
36 H 0.097 0.903
37 H 0.050 0.950
38 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.093 -7.801 13.937 16.009
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.154 4.154
3 C -0.172 4.172
4 C 0.023 3.977
5 N -0.335 5.335
6 C -0.361 4.361
7 H 0.046 0.954
8 C -0.211 4.211
9 N -0.597 5.597
10 Si 0.765 3.235
11 H -0.208 1.208
12 H -0.242 1.242
13 H -0.176 1.176
14 C 0.005 3.995
15 C 0.001 3.999
16 H 0.083 0.917
17 C -0.186 4.186
18 C -0.176 4.176
19 C -0.045 4.045
20 O -0.312 6.312
21 H 0.088 0.912
22 H 0.072 0.928
23 H 0.061 0.939
24 H 0.077 0.923
25 H 0.093 0.907
26 H 0.067 0.933
27 H 0.051 0.949
28 H 0.056 0.944
29 H 0.084 0.916
30 H 0.065 0.935
31 H 0.100 0.900
32 H 0.050 0.950
33 H 0.129 0.871
34 H 0.085 0.915
35 H 0.111 0.889
36 H 0.116 0.884
37 H 0.068 0.932
38 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -1.115 -7.677 13.636 15.688
hybrid contribution -0.293 1.026 -0.169 1.080
sum -1.407 -6.651 13.467 15.085
Atomic orbital electron populations
1.21756 0.95475 1.02030 1.01355 1.21451 0.96199 0.95408 1.02303
1.22108 0.97755 0.97098 1.00265 1.21064 0.92317 0.84544 0.99769
1.44178 1.75685 1.12410 1.01207 1.18401 1.33349 0.93082 0.91267
0.95441 1.25929 0.99673 0.97388 0.98154 1.70037 1.43255 1.06871
1.39501 0.85963 0.81280 0.77895 0.78353 1.20762 1.24239 1.17590
1.21521 0.93825 0.96169 0.88000 1.23779 0.91362 0.96339 0.88381
0.91729 1.23325 0.96545 1.01624 0.97138 1.23060 0.95735 1.03977
0.94832 1.23295 0.90151 0.98161 0.92858 1.88753 1.33490 1.75608
1.33397 0.91229 0.92826 0.93880 0.92255 0.90672 0.93275 0.94940
0.94427 0.91562 0.93457 0.89982 0.94971 0.87098 0.91529 0.88885
0.88403 0.93158 0.91588
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.47 9.91 71.98 0.71 -2.75 16
2 C -0.12 -3.05 5.93 30.59 0.18 -2.87 16
3 C -0.13 -4.67 5.54 30.59 0.17 -4.51 16
4 C 0.15 5.78 5.67 86.38 0.49 6.27 16
5 N -0.61 -29.57 2.06 -702.02 -1.44 -31.02 16
6 C -0.23 -13.75 9.52 84.03 0.80 -12.95 16
7 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16
8 C -0.02 -0.98 5.29 84.86 0.45 -0.53 16
9 N -0.95 -62.94 13.97 21.65 0.30 -62.64 16
10 Si 0.94 48.32 25.10 68.60 1.72 50.04 16
11 H -0.28 -13.89 6.68 99.48 0.66 -13.23 16
12 H -0.31 -16.46 7.11 99.48 0.71 -15.76 16
13 H -0.25 -12.15 7.11 99.48 0.71 -11.45 16
14 C 0.13 5.54 4.26 86.38 0.37 5.91 16
15 C 0.06 2.30 3.68 31.26 0.12 2.42 16
16 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16
17 C -0.15 -4.08 6.57 32.05 0.21 -3.86 16
18 C -0.14 -3.40 7.02 31.86 0.22 -3.17 16
19 C 0.03 1.11 7.79 72.45 0.56 1.67 16
20 O -0.39 -18.25 10.64 -148.98 -1.59 -19.83 16
21 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16
22 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16
23 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16
24 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16
25 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16
26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16
27 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16
28 H 0.04 1.55 8.04 -2.39 -0.02 1.53 16
29 H 0.07 2.17 8.08 -2.39 -0.02 2.15 16
30 H 0.26 16.15 8.31 -92.70 -0.77 15.38 16
31 H 0.08 2.90 8.07 -2.39 -0.02 2.88 16
32 H 0.03 1.56 3.38 -2.39 -0.01 1.55 16
33 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16
34 H 0.07 1.94 8.06 -2.39 -0.02 1.92 16
35 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16
36 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16
37 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16
38 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16
Total: -1.00 -73.36 301.68 4.22 -69.14
By element:
Atomic # 1 Polarization: 7.75 SS G_CDS: 0.95 Total: 8.70 kcal
Atomic # 6 Polarization: -18.67 SS G_CDS: 4.28 Total: -14.38 kcal
Atomic # 7 Polarization: -92.51 SS G_CDS: -1.14 Total: -93.66 kcal
Atomic # 8 Polarization: -18.25 SS G_CDS: -1.59 Total: -19.83 kcal
Atomic # 14 Polarization: 48.32 SS G_CDS: 1.72 Total: 50.04 kcal
Total: -73.36 4.22 -69.14 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001207888099.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.590 kcal
(2) G-P(sol) polarization free energy of solvation -73.361 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.771 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.225 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.136 kcal
(6) G-S(sol) free energy of system = (1) + (5) -58.546 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds