Wall clock time and date at job start Sun Mar 29 2020 21:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 N 1.46906 * 109.46907 * 119.99683 * 2 1 3 6 6 C 1.46853 * 110.99832 * 184.21088 * 5 2 1 7 7 C 1.53033 * 109.52262 * 174.16246 * 6 5 2 8 8 C 1.53112 * 109.27992 * 59.17361 * 7 6 5 9 9 O 1.42905 * 109.52334 * 182.44192 * 8 7 6 10 10 C 1.34932 * 116.99821 * 269.68553 * 9 8 7 11 11 H 1.08000 * 119.99815 * 359.97438 * 10 9 8 12 12 C 1.38638 * 119.99770 * 179.97438 * 10 9 8 13 13 N 1.31582 * 120.00023 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99724 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46772 * 90.00215 * 14 12 10 16 16 H 1.48498 * 109.47040 * 209.99924 * 14 12 10 17 17 H 1.48499 * 109.47498 * 329.99981 * 14 12 10 18 18 C 1.53120 * 109.16707 * 302.34582 * 8 7 6 19 19 C 1.46844 * 110.99887 * 59.99965 * 5 2 1 20 20 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 21 21 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 22 22 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 24 24 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 25 25 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 26 26 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 27 27 H 1.09002 * 109.47153 * 60.00008 * 4 2 1 28 28 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 29 29 H 1.09001 * 109.46125 * 294.17808 * 6 5 2 30 30 H 1.09003 * 109.46462 * 54.14202 * 6 5 2 31 31 H 1.09007 * 109.50330 * 299.23709 * 7 6 5 32 32 H 1.09002 * 109.50417 * 179.12117 * 7 6 5 33 33 H 1.09005 * 109.52421 * 62.25399 * 8 7 6 34 34 H 0.96995 * 119.99695 * 180.02562 * 13 12 10 35 35 H 1.08996 * 109.49890 * 297.71825 * 18 8 7 36 36 H 1.08994 * 109.50831 * 177.59288 * 18 8 7 37 37 H 1.09000 * 109.46299 * 305.85220 * 19 5 2 38 38 H 1.08997 * 109.46352 * 65.82665 * 19 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0196 -0.6925 1.1995 6 6 3.4841 -0.6255 1.2849 7 6 3.9470 -1.2268 2.6138 8 6 3.4779 -2.6817 2.7010 9 8 3.8582 -3.2312 3.9642 10 6 5.0619 -3.8373 4.0312 11 1 5.6892 -3.8906 3.1536 12 6 5.4933 -4.3915 5.2264 13 7 4.7288 -4.3270 6.2954 14 14 7.1600 -5.2299 5.3193 15 1 8.1951 -4.2334 5.6948 16 1 7.1162 -6.3069 6.3408 17 1 7.4939 -5.8158 3.9963 18 6 1.9538 -2.7278 2.5610 19 6 1.5487 -2.0829 1.2335 20 1 -0.3633 0.5139 0.8899 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 3.1300 1.4425 -0.0005 24 1 1.6767 1.9562 -0.8900 25 1 1.6767 1.9564 0.8899 26 1 1.6766 -1.7490 -1.2491 27 1 1.6767 -0.2075 -2.1392 28 1 3.1300 -0.7217 -1.2489 29 1 3.9220 -1.1874 0.4599 30 1 3.8042 0.4148 1.2258 31 1 3.5205 -0.6569 3.4393 32 1 5.0350 -1.1912 2.6701 33 1 3.9351 -3.2606 1.8985 34 1 5.0309 -4.7144 7.1317 35 1 1.4961 -2.1814 3.3856 36 1 1.6178 -3.7645 2.5795 37 1 0.4631 -2.1012 1.1373 38 1 1.9957 -2.6380 0.4088 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224382880.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:24 Heat of formation + Delta-G solvation = -39.568230 kcal Electronic energy + Delta-G solvation = -16721.538129 eV Core-core repulsion = 14178.253115 eV Total energy + Delta-G solvation = -2543.285014 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.60711 -36.70680 -34.14963 -31.58071 -30.70342 -29.34829 -27.36620 -27.23614 -24.66400 -22.82383 -22.27584 -19.59541 -18.57138 -17.44016 -16.26059 -15.18242 -14.64070 -14.33967 -14.07493 -14.03198 -13.79974 -13.49389 -13.08595 -12.45947 -12.25790 -12.00760 -11.87421 -11.73720 -11.50477 -11.17590 -11.11522 -11.02078 -10.86336 -10.64102 -10.55595 -10.40941 -10.26131 -9.64543 -9.27182 -8.97881 -8.00772 -7.89647 -5.89115 -3.51892 3.33701 3.36292 3.40167 4.03715 4.35039 4.79550 4.90176 5.13260 5.27931 5.33538 5.38517 5.47145 5.52599 5.59116 5.71171 5.74525 5.76799 5.82313 5.83795 5.86121 5.94221 6.07170 6.09546 6.15086 6.30096 6.32571 6.34821 6.59918 6.67800 6.83059 6.99461 7.11211 7.43114 7.44075 7.52831 8.49123 9.54405 10.25514 11.32080 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.055113 B = 0.005831 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.926406 B = 4800.972077 C = 4948.633537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.100 3.900 3 C -0.141 4.141 4 C -0.181 4.181 5 N -0.524 5.524 6 C 0.056 3.944 7 C -0.134 4.134 8 C 0.100 3.900 9 O -0.286 6.286 10 C -0.356 4.356 11 H 0.060 0.940 12 C 0.021 3.979 13 N -0.889 5.889 14 Si 0.922 3.078 15 H -0.281 1.281 16 H -0.284 1.284 17 H -0.276 1.276 18 C -0.111 4.111 19 C 0.058 3.942 20 H 0.063 0.937 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.029 0.971 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.031 0.969 34 H 0.257 0.743 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.062 8.408 -13.838 17.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.010 3.990 3 C -0.198 4.198 4 C -0.240 4.240 5 N -0.249 5.249 6 C -0.072 4.072 7 C -0.173 4.173 8 C 0.040 3.960 9 O -0.201 6.201 10 C -0.436 4.436 11 H 0.078 0.922 12 C -0.176 4.176 13 N -0.533 5.533 14 Si 0.749 3.251 15 H -0.208 1.208 16 H -0.209 1.209 17 H -0.202 1.202 18 C -0.149 4.149 19 C -0.070 4.070 20 H 0.082 0.918 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -6.374 8.603 -13.093 16.914 hybrid contribution 1.420 -0.870 -0.880 1.884 sum -4.953 7.733 -13.973 16.721 Atomic orbital electron populations 1.21890 0.93967 1.01996 1.01789 1.21055 0.95313 0.94293 0.88342 1.21922 1.01177 0.94885 1.01825 1.22501 1.01642 1.01170 0.98692 1.62188 1.10704 1.15094 1.36949 1.22177 0.86972 1.00389 0.97654 1.22131 1.00601 0.98379 0.96167 1.21728 0.93057 0.92022 0.89149 1.85692 1.35551 1.72758 1.26097 1.20858 0.93307 1.33206 0.96209 0.92225 1.24928 0.98612 0.99104 0.94994 1.70021 1.36373 1.46552 1.00332 0.86015 0.82374 0.78933 0.77743 1.20776 1.20938 1.20164 1.21602 0.96561 1.00203 0.96532 1.22140 0.99797 0.87770 0.97299 0.91756 0.92648 0.92462 0.92396 0.92626 0.91741 0.92351 0.92452 0.92453 0.95327 0.90917 0.91057 0.91747 0.95049 0.93314 0.90834 0.91565 0.90708 0.95113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.25 37.16 0.31 -1.16 16 2 C 0.10 1.18 0.71 -131.60 -0.09 1.09 16 3 C -0.14 -1.50 8.12 37.16 0.30 -1.20 16 4 C -0.18 -2.01 7.79 37.16 0.29 -1.72 16 5 N -0.52 -7.76 4.47 -219.01 -0.98 -8.74 16 6 C 0.06 0.87 4.67 -3.83 -0.02 0.86 16 7 C -0.13 -2.67 5.72 -26.66 -0.15 -2.82 16 8 C 0.10 2.25 2.72 -26.61 -0.07 2.18 16 9 O -0.29 -8.34 9.43 -16.52 -0.16 -8.50 16 10 C -0.36 -10.62 9.78 30.88 0.30 -10.32 16 11 H 0.06 1.68 7.64 -52.49 -0.40 1.28 16 12 C 0.02 0.64 5.49 -17.51 -0.10 0.55 16 13 N -0.89 -28.39 13.67 55.48 0.76 -27.63 16 14 Si 0.92 22.42 29.55 -169.99 -5.02 17.40 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 C -0.11 -2.13 5.75 -26.65 -0.15 -2.28 16 19 C 0.06 0.88 4.64 -3.83 -0.02 0.86 16 20 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.06 0.60 6.28 -51.93 -0.33 0.28 16 23 H 0.06 0.63 6.22 -51.93 -0.32 0.30 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.67 6.54 -51.93 -0.34 0.33 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.67 6.63 -51.93 -0.34 0.32 16 29 H 0.03 0.44 6.71 -51.93 -0.35 0.10 16 30 H 0.07 1.03 5.90 -51.93 -0.31 0.73 16 31 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.03 0.71 7.80 -51.93 -0.41 0.31 16 34 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.07 1.02 6.01 -51.93 -0.31 0.70 16 38 H 0.03 0.46 6.63 -51.93 -0.34 0.12 16 LS Contribution 290.03 15.07 4.37 4.37 Total: -1.00 -32.51 290.03 -6.82 -39.33 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -6.39 Total: -2.27 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: 0.60 Total: -13.97 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: -0.22 Total: -36.36 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.16 Total: -8.50 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.51 -6.82 -39.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224382880.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.241 kcal (2) G-P(sol) polarization free energy of solvation -32.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds