Wall clock time and date at job start Sun Mar 29 2020 21:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 N 1.46906 * 109.46907 * 119.99683 * 2 1 3 6 6 C 1.46853 * 110.99832 * 184.21088 * 5 2 1 7 7 C 1.53033 * 109.52262 * 174.16246 * 6 5 2 8 8 C 1.53112 * 109.27992 * 59.17361 * 7 6 5 9 9 O 1.42905 * 109.52334 * 182.44192 * 8 7 6 10 10 C 1.34932 * 116.99821 * 269.68553 * 9 8 7 11 11 H 1.08000 * 119.99815 * 359.97438 * 10 9 8 12 12 C 1.38638 * 119.99770 * 179.97438 * 10 9 8 13 13 N 1.31582 * 120.00023 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99724 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46772 * 90.00215 * 14 12 10 16 16 H 1.48498 * 109.47040 * 209.99924 * 14 12 10 17 17 H 1.48499 * 109.47498 * 329.99981 * 14 12 10 18 18 C 1.53120 * 109.16707 * 302.34582 * 8 7 6 19 19 C 1.46844 * 110.99887 * 59.99965 * 5 2 1 20 20 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 21 21 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 22 22 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 24 24 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 25 25 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 26 26 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 27 27 H 1.09002 * 109.47153 * 60.00008 * 4 2 1 28 28 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 29 29 H 1.09001 * 109.46125 * 294.17808 * 6 5 2 30 30 H 1.09003 * 109.46462 * 54.14202 * 6 5 2 31 31 H 1.09007 * 109.50330 * 299.23709 * 7 6 5 32 32 H 1.09002 * 109.50417 * 179.12117 * 7 6 5 33 33 H 1.09005 * 109.52421 * 62.25399 * 8 7 6 34 34 H 0.96995 * 119.99695 * 180.02562 * 13 12 10 35 35 H 1.08996 * 109.49890 * 297.71825 * 18 8 7 36 36 H 1.08994 * 109.50831 * 177.59288 * 18 8 7 37 37 H 1.09000 * 109.46299 * 305.85220 * 19 5 2 38 38 H 1.08997 * 109.46352 * 65.82665 * 19 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0196 -0.6925 1.1995 6 6 3.4841 -0.6255 1.2849 7 6 3.9470 -1.2268 2.6138 8 6 3.4779 -2.6817 2.7010 9 8 3.8582 -3.2312 3.9642 10 6 5.0619 -3.8373 4.0312 11 1 5.6892 -3.8906 3.1536 12 6 5.4933 -4.3915 5.2264 13 7 4.7288 -4.3270 6.2954 14 14 7.1600 -5.2299 5.3193 15 1 8.1951 -4.2334 5.6948 16 1 7.1162 -6.3069 6.3408 17 1 7.4939 -5.8158 3.9963 18 6 1.9538 -2.7278 2.5610 19 6 1.5487 -2.0829 1.2335 20 1 -0.3633 0.5139 0.8899 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 3.1300 1.4425 -0.0005 24 1 1.6767 1.9562 -0.8900 25 1 1.6767 1.9564 0.8899 26 1 1.6766 -1.7490 -1.2491 27 1 1.6767 -0.2075 -2.1392 28 1 3.1300 -0.7217 -1.2489 29 1 3.9220 -1.1874 0.4599 30 1 3.8042 0.4148 1.2258 31 1 3.5205 -0.6569 3.4393 32 1 5.0350 -1.1912 2.6701 33 1 3.9351 -3.2606 1.8985 34 1 5.0309 -4.7144 7.1317 35 1 1.4961 -2.1814 3.3856 36 1 1.6178 -3.7645 2.5795 37 1 0.4631 -2.1012 1.1373 38 1 1.9957 -2.6380 0.4088 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224382880.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:24 Heat of formation + Delta-G solvation = -61.725608 kcal Electronic energy + Delta-G solvation = -16722.498945 eV Core-core repulsion = 14178.253115 eV Total energy + Delta-G solvation = -2544.245830 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.84582 -38.50477 -35.69243 -33.71698 -32.08165 -30.82590 -28.21112 -28.16242 -26.82940 -24.35914 -23.67911 -21.09301 -19.88028 -19.45609 -17.74076 -16.88748 -15.94431 -15.85858 -15.57373 -15.38972 -15.06033 -14.91946 -14.51057 -14.00097 -13.57024 -13.49407 -13.10116 -12.89425 -12.77521 -12.67015 -12.58681 -12.42649 -12.24388 -12.12549 -11.95850 -11.85130 -11.60730 -11.28971 -11.17461 -10.88658 -10.08454 -9.16059 -8.16359 -5.85162 1.38122 1.44994 1.53936 2.32991 2.90221 3.16047 3.63111 3.84766 3.91150 4.05233 4.09947 4.28391 4.31408 4.31918 4.43212 4.53108 4.65747 4.74296 4.76364 4.80985 4.88900 4.94484 4.99344 5.02368 5.05840 5.09180 5.15725 5.18747 5.25648 5.37027 5.41645 5.43781 5.51369 6.19304 6.22591 6.32678 7.26530 8.09925 9.08807 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.055113 B = 0.005831 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.926406 B = 4800.972077 C = 4948.633537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.096 3.904 3 C -0.139 4.139 4 C -0.178 4.178 5 N -0.536 5.536 6 C 0.068 3.932 7 C -0.126 4.126 8 C 0.089 3.911 9 O -0.330 6.330 10 C -0.371 4.371 11 H 0.068 0.932 12 C -0.044 4.044 13 N -0.941 5.941 14 Si 1.003 2.997 15 H -0.270 1.270 16 H -0.278 1.278 17 H -0.260 1.260 18 C -0.106 4.106 19 C 0.069 3.931 20 H 0.056 0.944 21 H 0.077 0.923 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.077 0.923 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.049 0.951 29 H 0.035 0.965 30 H 0.092 0.908 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.028 0.972 34 H 0.260 0.740 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.097 0.903 38 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.809 8.979 -15.985 19.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.007 3.993 3 C -0.197 4.197 4 C -0.237 4.237 5 N -0.262 5.262 6 C -0.060 4.060 7 C -0.165 4.165 8 C 0.031 3.969 9 O -0.246 6.246 10 C -0.450 4.450 11 H 0.086 0.914 12 C -0.237 4.237 13 N -0.586 5.586 14 Si 0.826 3.174 15 H -0.196 1.196 16 H -0.203 1.203 17 H -0.184 1.184 18 C -0.144 4.144 19 C -0.059 4.059 20 H 0.075 0.925 21 H 0.096 0.904 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.096 0.904 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.110 0.890 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.115 0.885 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.136 9.195 -15.278 18.858 hybrid contribution 1.260 -0.989 -0.257 1.623 sum -4.875 8.206 -15.536 18.233 Atomic orbital electron populations 1.21888 0.92771 1.02210 1.02573 1.21225 0.96232 0.94593 0.87226 1.21922 1.00988 0.94121 1.02626 1.22466 1.01148 1.01035 0.99021 1.62156 1.09852 1.14779 1.39376 1.22018 0.87941 1.01118 0.94901 1.21986 0.99684 0.96573 0.98238 1.22089 0.95167 0.93065 0.86604 1.85623 1.35672 1.73443 1.29876 1.21326 0.93760 1.33093 0.96811 0.91441 1.26204 1.03379 0.99790 0.94303 1.70201 1.39106 1.48139 1.01178 0.84789 0.76423 0.77754 0.78475 1.19568 1.20324 1.18393 1.21567 0.94025 1.00235 0.98536 1.22026 1.01129 0.88049 0.94678 0.92470 0.90422 0.92525 0.92686 0.90375 0.92447 0.92800 0.90352 0.93174 0.94728 0.88990 0.92954 0.93029 0.95436 0.93143 0.92510 0.92152 0.88463 0.94439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.25 71.98 0.59 -1.87 16 2 C 0.10 2.00 0.71 3.52 0.00 2.00 16 3 C -0.14 -2.56 8.12 71.98 0.58 -1.98 16 4 C -0.18 -3.37 7.79 71.98 0.56 -2.81 16 5 N -0.54 -15.02 4.47 -846.82 -3.79 -18.80 16 6 C 0.07 2.06 4.67 86.32 0.40 2.46 16 7 C -0.13 -5.12 5.72 30.64 0.18 -4.94 16 8 C 0.09 4.13 2.72 30.67 0.08 4.21 16 9 O -0.33 -20.03 9.43 -82.02 -0.77 -20.81 16 10 C -0.37 -22.65 9.78 67.92 0.66 -21.98 16 11 H 0.07 3.86 7.64 -2.91 -0.02 3.84 16 12 C -0.04 -2.68 5.49 84.83 0.47 -2.21 16 13 N -0.94 -61.70 13.67 21.61 0.30 -61.41 16 14 Si 1.00 46.26 29.55 68.60 2.03 48.29 16 15 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 16 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 17 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 18 C -0.11 -4.13 5.75 30.65 0.18 -3.95 16 19 C 0.07 2.01 4.64 86.33 0.40 2.42 16 20 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 21 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.06 1.02 6.28 -2.39 -0.01 1.01 16 23 H 0.05 1.04 6.22 -2.39 -0.01 1.02 16 24 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.05 1.07 6.54 -2.39 -0.02 1.06 16 27 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.05 1.02 6.63 -2.39 -0.02 1.01 16 29 H 0.03 1.02 6.71 -2.39 -0.02 1.00 16 30 H 0.09 2.45 5.90 -2.39 -0.01 2.44 16 31 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 32 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.03 1.27 7.80 -2.38 -0.02 1.26 16 34 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 35 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.10 2.44 6.01 -2.39 -0.01 2.43 16 38 H 0.04 1.06 6.63 -2.39 -0.02 1.05 16 Total: -1.00 -71.87 290.03 2.89 -68.98 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 1.01 Total: 12.40 kcal Atomic # 6 Polarization: -32.76 SS G_CDS: 4.11 Total: -28.65 kcal Atomic # 7 Polarization: -76.72 SS G_CDS: -3.49 Total: -80.21 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.77 Total: -20.81 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -71.87 2.89 -68.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224382880.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.258 kcal (2) G-P(sol) polarization free energy of solvation -71.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds