Wall clock time and date at job start Sun Mar 29 2020 21:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.53000 * 109.47060 * 65.00086 * 3 2 1 6 6 C 1.53002 * 109.46817 * 184.99998 * 3 2 1 7 7 O 1.42898 * 109.46622 * 174.99979 * 6 3 2 8 8 C 1.42905 * 113.99720 * 179.97438 * 7 6 3 9 9 H 1.09001 * 110.88874 * 327.57278 * 8 7 6 10 10 C 1.55157 * 111.00459 * 203.64959 * 8 7 6 11 11 C 1.54326 * 102.94273 * 206.42681 * 10 8 7 12 12 N 1.47021 * 107.27205 * 22.19130 * 11 10 8 13 13 C 1.36937 * 125.64878 * 181.09816 * 12 11 10 14 14 H 1.08003 * 119.99522 * 179.97438 * 13 12 11 15 15 C 1.38806 * 120.00271 * 359.95641 * 13 12 11 16 16 N 1.31624 * 119.99833 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00280 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47426 * 59.99796 * 17 15 13 19 19 H 1.48507 * 109.47284 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.46882 * 299.99973 * 17 15 13 21 21 C 1.47424 * 108.70207 * 1.05996 * 12 11 10 22 22 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 24 24 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 25 25 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 26 26 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 27 27 H 1.08992 * 109.47399 * 59.99823 * 5 3 2 28 28 H 1.09004 * 109.46724 * 180.02562 * 5 3 2 29 29 H 1.09001 * 109.47194 * 299.99650 * 5 3 2 30 30 H 1.09000 * 109.47059 * 294.99790 * 6 3 2 31 31 H 1.08996 * 109.47073 * 54.99883 * 6 3 2 32 32 H 1.09001 * 110.71874 * 324.78808 * 10 8 7 33 33 H 1.08993 * 110.72150 * 88.06438 * 10 8 7 34 34 H 1.09000 * 109.87858 * 262.77943 * 11 10 8 35 35 H 1.09001 * 110.01110 * 141.68096 * 11 10 8 36 36 H 0.96994 * 119.99830 * 179.97438 * 16 15 13 37 37 H 1.09003 * 110.36929 * 217.02796 * 21 12 11 38 38 H 1.09008 * 110.45820 * 94.75980 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5649 1.4442 -0.1257 7 8 4.0316 2.7897 -0.2429 8 6 5.4507 2.9041 -0.3659 9 1 5.9539 2.1117 0.1882 10 6 5.9381 4.3028 0.0962 11 6 7.2443 4.4950 -0.7030 12 7 7.1734 3.6099 -1.8747 13 6 8.1469 3.4672 -2.8272 14 1 7.9985 2.7875 -3.6533 15 6 9.3241 4.1963 -2.7311 16 7 9.5049 5.0245 -1.7242 17 14 10.6517 4.0022 -4.0307 18 1 10.1037 4.3791 -5.3584 19 1 11.8004 4.8836 -3.7004 20 1 11.1068 2.5890 -4.0661 21 6 5.8811 2.9007 -1.8540 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 2.0699 1.5875 2.1491 28 1 1.9983 3.1543 1.3071 29 1 0.5490 2.1253 1.3969 30 1 4.0030 0.9834 0.7597 31 1 3.8571 0.8799 -1.0113 32 1 5.2098 5.0706 -0.1648 33 1 6.1375 4.3071 1.1677 34 1 8.1002 4.2240 -0.0849 35 1 7.3343 5.5320 -1.0266 36 1 10.3277 5.5337 -1.6568 37 1 6.0037 1.8782 -2.2112 38 1 5.1469 3.4288 -2.4625 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224663702.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:51 Heat of formation + Delta-G solvation = -59.946279 kcal Electronic energy + Delta-G solvation = -16092.795384 eV Core-core repulsion = 13548.626712 eV Total energy + Delta-G solvation = -2544.168672 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.00499 -38.22415 -36.44822 -34.13829 -31.30666 -30.63885 -28.84501 -27.55461 -26.27969 -24.02099 -22.05506 -21.91398 -20.80576 -18.97311 -17.86268 -16.75164 -16.60068 -16.24542 -15.65248 -15.37415 -15.20936 -14.34467 -14.15362 -14.00203 -13.74162 -13.62935 -12.98086 -12.87758 -12.78665 -12.70006 -12.48154 -12.17731 -12.12030 -12.07819 -11.79462 -11.59314 -11.46625 -11.40463 -11.33769 -10.72710 -10.42701 -8.94975 -7.87085 -5.24613 1.45608 1.49660 1.56073 2.45227 2.66811 3.31349 3.71400 3.81439 3.91751 4.01259 4.08597 4.12877 4.17795 4.43460 4.48842 4.61038 4.66467 4.72940 4.74726 4.83013 4.90607 4.96161 5.00289 5.06262 5.13053 5.17158 5.23994 5.28976 5.41055 5.50740 5.57527 5.60694 5.70616 6.14344 6.36869 7.06556 7.72468 8.37407 9.23230 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.057611 B = 0.004923 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.903522 B = 5685.851388 C = 6066.306104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.088 4.088 4 H 0.068 0.932 5 C -0.141 4.141 6 C 0.058 3.942 7 O -0.384 6.384 8 C 0.091 3.909 9 H 0.074 0.926 10 C -0.124 4.124 11 C 0.186 3.814 12 N -0.626 5.626 13 C -0.251 4.251 14 H 0.083 0.917 15 C -0.064 4.064 16 N -0.951 5.951 17 Si 0.984 3.016 18 H -0.277 1.277 19 H -0.292 1.292 20 H -0.275 1.275 21 C 0.114 3.886 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.045 0.955 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.019 0.981 35 H 0.011 0.989 36 H 0.249 0.751 37 H 0.043 0.957 38 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.435 -8.960 5.694 18.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.106 4.106 4 H 0.086 0.914 5 C -0.199 4.199 6 C -0.019 4.019 7 O -0.302 6.302 8 C 0.032 3.968 9 H 0.092 0.908 10 C -0.162 4.162 11 C 0.061 3.939 12 N -0.354 5.354 13 C -0.379 4.379 14 H 0.100 0.900 15 C -0.257 4.257 16 N -0.600 5.600 17 Si 0.811 3.189 18 H -0.203 1.203 19 H -0.218 1.218 20 H -0.200 1.200 21 C -0.011 4.011 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.038 0.962 35 H 0.029 0.971 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -15.380 -8.728 5.659 18.567 hybrid contribution 1.226 0.081 -0.771 1.451 sum -14.153 -8.647 4.888 17.291 Atomic orbital electron populations 1.21792 0.94590 1.02215 1.02168 1.21497 0.96947 0.94340 1.02519 1.21156 0.92249 0.97708 0.99511 0.91352 1.21789 1.01645 1.00241 0.96186 1.22802 0.95775 0.83140 1.00149 1.87854 1.20595 1.27777 1.94016 1.23047 0.80929 0.97868 0.94912 0.90798 1.22795 0.96948 0.96071 1.00415 1.20926 0.93063 0.92960 0.86952 1.44667 1.15464 1.48533 1.26768 1.19452 0.95107 1.20860 1.02530 0.89960 1.25715 1.00436 0.98869 1.00715 1.70175 1.26641 1.30498 1.32655 0.85082 0.78014 0.77532 0.78251 1.20302 1.21777 1.20030 1.22070 0.87345 0.95462 0.96263 0.91782 0.91991 0.92897 0.91843 0.91174 0.92433 0.93574 0.91284 0.92668 0.93600 0.91043 0.89347 0.96227 0.97082 0.94191 0.93879 0.96115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.67 71.98 0.70 -1.36 16 2 C -0.12 -1.88 5.40 30.59 0.17 -1.71 16 3 C -0.09 -1.83 2.63 -10.79 -0.03 -1.86 16 4 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 5 C -0.14 -2.77 8.84 71.98 0.64 -2.13 16 6 C 0.06 1.48 5.20 71.98 0.37 1.86 16 7 O -0.38 -12.66 9.69 -148.98 -1.44 -14.10 16 8 C 0.09 3.41 3.49 31.99 0.11 3.52 16 9 H 0.07 2.63 7.90 -2.39 -0.02 2.61 16 10 C -0.12 -4.92 6.69 31.78 0.21 -4.71 16 11 C 0.19 9.62 5.38 86.73 0.47 10.09 16 12 N -0.63 -34.00 3.39 -691.97 -2.35 -36.35 16 13 C -0.25 -14.58 10.28 84.03 0.86 -13.71 16 14 H 0.08 4.55 7.83 -2.91 -0.02 4.52 16 15 C -0.06 -3.74 5.49 84.86 0.47 -3.27 16 16 N -0.95 -58.25 10.31 21.65 0.22 -58.03 16 17 Si 0.98 46.33 29.55 68.60 2.03 48.36 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 19 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 21 C 0.11 5.06 6.97 86.86 0.61 5.67 16 22 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 23 H 0.06 0.79 6.56 -2.39 -0.02 0.77 16 24 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.05 1.07 7.82 -2.39 -0.02 1.05 16 29 H 0.07 1.12 6.57 -2.39 -0.02 1.10 16 30 H 0.06 1.31 8.11 -2.39 -0.02 1.29 16 31 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 34 H 0.02 1.10 7.38 -2.39 -0.02 1.09 16 35 H 0.01 0.63 7.50 -2.39 -0.02 0.62 16 36 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 37 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -65.59 301.84 4.02 -61.57 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: 0.99 Total: 6.18 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 4.57 Total: -7.63 kcal Atomic # 7 Polarization: -92.25 SS G_CDS: -2.13 Total: -94.38 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -1.44 Total: -14.10 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -65.59 4.02 -61.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224663702.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.626 kcal (2) G-P(sol) polarization free energy of solvation -65.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds