Wall clock time and date at job start Sun Mar 29 2020 21:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46873 * 2 1 4 4 H 1.09002 * 109.46886 * 305.00137 * 3 2 1 5 5 C 1.53005 * 109.47345 * 65.00301 * 3 2 1 6 6 C 1.52994 * 109.46948 * 185.00218 * 3 2 1 7 7 O 1.42897 * 109.47179 * 174.99995 * 6 3 2 8 8 C 1.42901 * 114.00076 * 179.97438 * 7 6 3 9 9 H 1.08996 * 110.88937 * 32.43220 * 8 7 6 10 10 C 1.55165 * 111.03851 * 156.33214 * 8 7 6 11 11 C 1.54333 * 103.02173 * 153.39670 * 10 8 7 12 12 N 1.47022 * 107.26472 * 338.13783 * 11 10 8 13 13 C 1.36937 * 125.64503 * 178.84822 * 12 11 10 14 14 H 1.08005 * 119.99565 * 189.74932 * 13 12 11 15 15 C 1.38809 * 120.00423 * 9.75579 * 13 12 11 16 16 N 1.31616 * 120.00278 * 195.14513 * 15 13 12 17 17 Si 1.86800 * 119.99703 * 15.14195 * 15 13 12 18 18 H 1.48505 * 109.47219 * 54.48887 * 17 15 13 19 19 H 1.48498 * 109.47210 * 294.49091 * 17 15 13 20 20 H 1.48497 * 109.47206 * 174.48993 * 17 15 13 21 21 C 1.47428 * 108.70231 * 358.58813 * 12 11 10 22 22 H 1.09006 * 109.46722 * 299.99813 * 1 2 3 23 23 H 1.08997 * 109.47482 * 59.99819 * 1 2 3 24 24 H 1.09002 * 109.47039 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46803 * 239.99942 * 2 1 3 26 26 H 1.08994 * 109.47005 * 120.00352 * 2 1 3 27 27 H 1.08999 * 109.46506 * 299.99995 * 5 3 2 28 28 H 1.08998 * 109.46599 * 59.99433 * 5 3 2 29 29 H 1.08988 * 109.47054 * 180.02562 * 5 3 2 30 30 H 1.09004 * 109.47242 * 55.00347 * 6 3 2 31 31 H 1.08997 * 109.47368 * 294.99910 * 6 3 2 32 32 H 1.09004 * 110.71695 * 271.95872 * 10 8 7 33 33 H 1.09004 * 110.71650 * 35.04892 * 10 8 7 34 34 H 1.09003 * 109.98709 * 218.66838 * 11 10 8 35 35 H 1.08998 * 109.77991 * 97.49822 * 11 10 8 36 36 H 0.97001 * 120.00012 * 2.96790 * 16 15 13 37 37 H 1.09008 * 110.36455 * 143.19394 * 21 12 11 38 38 H 1.08997 * 110.36780 * 265.51363 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6353 2.1266 1.3074 6 6 3.5648 1.4444 -0.1258 7 8 4.0314 2.7899 -0.2429 8 6 5.4505 2.9043 -0.3660 9 1 5.8647 2.0483 -0.8986 10 6 5.8439 4.2349 -1.0605 11 6 7.2589 4.5099 -0.5090 12 7 7.3889 3.7633 0.7509 13 6 8.5049 3.7236 1.5434 14 1 8.5589 3.0250 2.3653 15 6 9.5666 4.5814 1.2908 16 7 10.7406 4.3554 1.8411 17 14 9.3291 6.0564 0.1694 18 1 8.1892 6.8724 0.6595 19 1 9.0452 5.5882 -1.2109 20 1 10.5639 6.8812 0.1682 21 6 6.1167 3.0696 1.0227 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 0.5490 2.1252 1.3969 28 1 2.0699 1.5875 2.1491 29 1 1.9982 3.1543 1.3072 30 1 3.8570 0.8801 -1.0114 31 1 4.0029 0.9836 0.7595 32 1 5.8665 4.1126 -2.1434 33 1 5.1589 5.0344 -0.7783 34 1 7.3853 5.5764 -0.3227 35 1 8.0066 4.1650 -1.2232 36 1 10.8757 3.5662 2.3886 37 1 6.3049 2.0943 1.4717 38 1 5.4872 3.6738 1.6760 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224663704.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:54 Heat of formation + Delta-G solvation = -32.917976 kcal Electronic energy + Delta-G solvation = -16210.631907 eV Core-core repulsion = 13667.635270 eV Total energy + Delta-G solvation = -2542.996637 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.79077 -37.12316 -35.36144 -32.37355 -30.24520 -29.34349 -27.96727 -26.56083 -23.90839 -23.06955 -21.03625 -20.23085 -19.98680 -17.47437 -16.74993 -15.79073 -15.30691 -14.81615 -14.57320 -14.25760 -13.61469 -13.41850 -13.15915 -12.68012 -12.31584 -12.24702 -12.17544 -11.92037 -11.74766 -11.41731 -11.09050 -10.98394 -10.82071 -10.70467 -10.55424 -10.38416 -9.94653 -9.32046 -9.23055 -8.95294 -8.66350 -7.02209 -6.30256 -3.20410 3.43696 3.52407 3.69236 3.79721 4.64031 4.71994 4.78688 4.84951 5.11242 5.12469 5.18829 5.34007 5.36958 5.37929 5.49144 5.52911 5.56936 5.63696 5.68930 5.81635 5.83417 5.88001 5.91713 6.00484 6.10873 6.24331 6.27535 6.34727 6.39401 6.54845 6.60485 6.78915 7.51271 7.70288 8.34669 9.05893 9.57535 10.24367 11.21145 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.058697 B = 0.005335 C = 0.005121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.911714 B = 5247.539292 C = 5465.954646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.090 4.090 4 H 0.076 0.924 5 C -0.145 4.145 6 C 0.066 3.934 7 O -0.376 6.376 8 C 0.073 3.927 9 H 0.069 0.931 10 C -0.122 4.122 11 C 0.111 3.889 12 N -0.612 5.612 13 C -0.323 4.323 14 H 0.078 0.922 15 C -0.023 4.023 16 N -0.929 5.929 17 Si 1.072 2.928 18 H -0.297 1.297 19 H -0.285 1.285 20 H -0.301 1.301 21 C 0.118 3.882 22 H 0.057 0.943 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.032 0.968 35 H 0.048 0.952 36 H 0.261 0.739 37 H 0.042 0.958 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.564 -6.559 -5.868 20.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.108 4.108 4 H 0.094 0.906 5 C -0.202 4.202 6 C -0.011 4.011 7 O -0.295 6.295 8 C 0.015 3.985 9 H 0.087 0.913 10 C -0.160 4.160 11 C -0.014 4.014 12 N -0.341 5.341 13 C -0.450 4.450 14 H 0.096 0.904 15 C -0.222 4.222 16 N -0.570 5.570 17 Si 0.906 3.094 18 H -0.226 1.226 19 H -0.213 1.213 20 H -0.230 1.230 21 C -0.008 4.008 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -17.841 -5.097 -6.429 19.637 hybrid contribution -0.625 -1.596 0.751 1.871 sum -18.465 -6.693 -5.679 20.445 Atomic orbital electron populations 1.21796 0.95591 1.01454 1.02050 1.21514 0.96129 0.95884 1.02136 1.21140 0.93850 0.96268 0.99563 0.90554 1.21817 1.00570 1.01494 0.96342 1.22547 0.94320 0.84438 0.99824 1.87844 1.21604 1.25847 1.94200 1.23346 0.79897 0.97967 0.97304 0.91343 1.22621 0.97189 0.96806 0.99385 1.22006 0.94494 0.95694 0.89199 1.44718 1.10452 1.56748 1.22159 1.20177 0.92615 1.20035 1.12162 0.90410 1.25857 0.92098 1.02137 1.02096 1.70910 1.21280 1.30037 1.34793 0.83813 0.73362 0.76296 0.75888 1.22632 1.21267 1.22954 1.21951 0.88139 0.96380 0.94375 0.92351 0.92744 0.92857 0.91963 0.91797 0.92847 0.92905 0.91724 0.93742 0.93380 0.90981 0.90579 0.95039 0.93389 0.92913 0.93972 0.95050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.67 37.16 0.36 -0.79 16 2 C -0.12 -1.05 5.40 -26.73 -0.14 -1.19 16 3 C -0.09 -0.96 2.63 -90.62 -0.24 -1.20 16 4 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 5 C -0.15 -1.58 8.85 37.16 0.33 -1.25 16 6 C 0.07 0.85 5.20 37.15 0.19 1.04 16 7 O -0.38 -6.06 9.69 -35.23 -0.34 -6.41 16 8 C 0.07 1.31 3.49 -24.58 -0.09 1.23 16 9 H 0.07 1.17 7.90 -51.93 -0.41 0.76 16 10 C -0.12 -2.20 6.69 -24.89 -0.17 -2.37 16 11 C 0.11 2.51 4.61 -3.06 -0.01 2.50 16 12 N -0.61 -15.71 3.33 -170.06 -0.57 -16.28 16 13 C -0.32 -9.57 10.56 -15.06 -0.16 -9.72 16 14 H 0.08 2.41 8.06 -52.48 -0.42 1.99 16 15 C -0.02 -0.69 5.50 -17.43 -0.10 -0.78 16 16 N -0.93 -29.76 13.71 55.49 0.76 -29.00 16 17 Si 1.07 27.49 24.52 -169.99 -4.17 23.32 16 18 H -0.30 -7.41 6.82 56.52 0.39 -7.02 16 19 H -0.29 -6.64 5.41 56.52 0.31 -6.34 16 20 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 21 C 0.12 2.53 6.97 -2.53 -0.02 2.52 16 22 H 0.06 0.44 6.57 -51.93 -0.34 0.10 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.49 6.56 -51.93 -0.34 0.15 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.81 7.82 -51.94 -0.41 0.41 16 30 H 0.04 0.53 8.11 -51.93 -0.42 0.11 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.03 0.75 3.89 -51.93 -0.20 0.55 16 35 H 0.05 1.11 6.70 -51.93 -0.35 0.77 16 36 H 0.26 8.25 8.73 -40.82 -0.36 7.89 16 37 H 0.04 0.89 8.14 -51.92 -0.42 0.47 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 294.04 15.07 4.43 4.43 Total: -1.00 -32.05 294.04 -6.73 -38.79 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -6.81 Total: -4.82 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -0.04 Total: -10.04 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.19 Total: -45.28 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -0.34 Total: -6.41 kcal Atomic # 14 Polarization: 27.49 SS G_CDS: -4.17 Total: 23.32 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.05 -6.73 -38.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224663704.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.868 kcal (2) G-P(sol) polarization free energy of solvation -32.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds