Wall clock time and date at job start Sun Mar 29 2020 21:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46873 * 2 1 4 4 H 1.09002 * 109.46886 * 305.00137 * 3 2 1 5 5 C 1.53005 * 109.47345 * 65.00301 * 3 2 1 6 6 C 1.52994 * 109.46948 * 185.00218 * 3 2 1 7 7 O 1.42897 * 109.47179 * 174.99995 * 6 3 2 8 8 C 1.42901 * 114.00076 * 179.97438 * 7 6 3 9 9 H 1.08996 * 110.88937 * 32.43220 * 8 7 6 10 10 C 1.55165 * 111.03851 * 156.33214 * 8 7 6 11 11 C 1.54333 * 103.02173 * 153.39670 * 10 8 7 12 12 N 1.47022 * 107.26472 * 338.13783 * 11 10 8 13 13 C 1.36937 * 125.64503 * 178.84822 * 12 11 10 14 14 H 1.08005 * 119.99565 * 189.74932 * 13 12 11 15 15 C 1.38809 * 120.00423 * 9.75579 * 13 12 11 16 16 N 1.31616 * 120.00278 * 195.14513 * 15 13 12 17 17 Si 1.86800 * 119.99703 * 15.14195 * 15 13 12 18 18 H 1.48505 * 109.47219 * 54.48887 * 17 15 13 19 19 H 1.48498 * 109.47210 * 294.49091 * 17 15 13 20 20 H 1.48497 * 109.47206 * 174.48993 * 17 15 13 21 21 C 1.47428 * 108.70231 * 358.58813 * 12 11 10 22 22 H 1.09006 * 109.46722 * 299.99813 * 1 2 3 23 23 H 1.08997 * 109.47482 * 59.99819 * 1 2 3 24 24 H 1.09002 * 109.47039 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46803 * 239.99942 * 2 1 3 26 26 H 1.08994 * 109.47005 * 120.00352 * 2 1 3 27 27 H 1.08999 * 109.46506 * 299.99995 * 5 3 2 28 28 H 1.08998 * 109.46599 * 59.99433 * 5 3 2 29 29 H 1.08988 * 109.47054 * 180.02562 * 5 3 2 30 30 H 1.09004 * 109.47242 * 55.00347 * 6 3 2 31 31 H 1.08997 * 109.47368 * 294.99910 * 6 3 2 32 32 H 1.09004 * 110.71695 * 271.95872 * 10 8 7 33 33 H 1.09004 * 110.71650 * 35.04892 * 10 8 7 34 34 H 1.09003 * 109.98709 * 218.66838 * 11 10 8 35 35 H 1.08998 * 109.77991 * 97.49822 * 11 10 8 36 36 H 0.97001 * 120.00012 * 2.96790 * 16 15 13 37 37 H 1.09008 * 110.36455 * 143.19394 * 21 12 11 38 38 H 1.08997 * 110.36780 * 265.51363 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6353 2.1266 1.3074 6 6 3.5648 1.4444 -0.1258 7 8 4.0314 2.7899 -0.2429 8 6 5.4505 2.9043 -0.3660 9 1 5.8647 2.0483 -0.8986 10 6 5.8439 4.2349 -1.0605 11 6 7.2589 4.5099 -0.5090 12 7 7.3889 3.7633 0.7509 13 6 8.5049 3.7236 1.5434 14 1 8.5589 3.0250 2.3653 15 6 9.5666 4.5814 1.2908 16 7 10.7406 4.3554 1.8411 17 14 9.3291 6.0564 0.1694 18 1 8.1892 6.8724 0.6595 19 1 9.0452 5.5882 -1.2109 20 1 10.5639 6.8812 0.1682 21 6 6.1167 3.0696 1.0227 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 0.5490 2.1252 1.3969 28 1 2.0699 1.5875 2.1491 29 1 1.9982 3.1543 1.3072 30 1 3.8570 0.8801 -1.0114 31 1 4.0029 0.9836 0.7595 32 1 5.8665 4.1126 -2.1434 33 1 5.1589 5.0344 -0.7783 34 1 7.3853 5.5764 -0.3227 35 1 8.0066 4.1650 -1.2232 36 1 10.8757 3.5662 2.3886 37 1 6.3049 2.0943 1.4717 38 1 5.4872 3.6738 1.6760 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224663704.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:53 Heat of formation + Delta-G solvation = -53.896159 kcal Electronic energy + Delta-G solvation = -16211.541589 eV Core-core repulsion = 13667.635270 eV Total energy + Delta-G solvation = -2543.906320 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.19242 -38.42927 -36.54955 -34.49376 -31.57428 -30.69522 -29.59349 -27.57173 -25.74465 -24.01371 -22.74537 -21.90811 -20.87656 -19.63765 -18.08676 -17.33916 -16.48226 -16.08534 -15.89544 -15.65358 -15.28627 -14.82612 -14.29690 -14.18250 -14.03914 -13.49230 -13.26594 -13.09086 -13.05803 -12.81612 -12.61864 -12.23589 -12.06190 -11.71136 -11.60526 -11.52587 -11.43036 -11.37589 -11.04553 -10.75199 -10.48246 -9.15615 -8.70356 -5.52609 1.39827 1.50113 1.72230 2.50669 2.53064 3.11825 3.34734 3.65101 3.82611 3.93196 3.94755 4.05550 4.10108 4.26584 4.40506 4.45580 4.56793 4.62131 4.65184 4.71256 4.79133 4.84738 4.88195 4.92940 4.98094 5.09210 5.15061 5.16083 5.21887 5.25519 5.46761 5.48740 5.54128 6.04571 6.28231 6.77452 7.37933 8.03395 8.82966 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.058697 B = 0.005335 C = 0.005121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.911714 B = 5247.539292 C = 5465.954646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.085 4.085 4 H 0.078 0.922 5 C -0.144 4.144 6 C 0.057 3.943 7 O -0.380 6.380 8 C 0.090 3.910 9 H 0.081 0.919 10 C -0.111 4.111 11 C 0.099 3.901 12 N -0.633 5.633 13 C -0.319 4.319 14 H 0.045 0.955 15 C -0.078 4.078 16 N -0.961 5.961 17 Si 1.110 2.890 18 H -0.287 1.287 19 H -0.244 1.244 20 H -0.309 1.309 21 C 0.112 3.888 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.060 0.940 31 H 0.041 0.959 32 H 0.109 0.891 33 H 0.084 0.916 34 H 0.030 0.970 35 H 0.046 0.954 36 H 0.247 0.753 37 H 0.035 0.965 38 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.890 -6.549 -8.092 23.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.103 4.103 4 H 0.097 0.903 5 C -0.201 4.201 6 C -0.019 4.019 7 O -0.299 6.299 8 C 0.031 3.969 9 H 0.099 0.901 10 C -0.149 4.149 11 C -0.025 4.025 12 N -0.362 5.362 13 C -0.447 4.447 14 H 0.063 0.937 15 C -0.271 4.271 16 N -0.605 5.605 17 Si 0.938 3.062 18 H -0.215 1.215 19 H -0.169 1.169 20 H -0.239 1.239 21 C -0.013 4.013 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.127 0.873 33 H 0.103 0.897 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -20.223 -5.122 -8.666 22.590 hybrid contribution 0.027 -1.709 1.553 2.310 sum -20.196 -6.831 -7.113 22.475 Atomic orbital electron populations 1.21791 0.94554 1.02205 1.02227 1.21500 0.96984 0.94402 1.02477 1.21145 0.92210 0.97644 0.99350 0.90328 1.21808 1.01673 1.00185 0.96479 1.22816 0.95747 0.83087 1.00261 1.87850 1.20123 1.27858 1.94051 1.23068 0.80791 0.98636 0.94447 0.90136 1.22602 0.94107 0.96864 1.01308 1.22198 0.97614 0.94955 0.87727 1.44796 1.10639 1.57721 1.23025 1.20082 0.94279 1.18700 1.11621 0.93726 1.27208 0.91561 1.04690 1.03609 1.71014 1.22825 1.30126 1.36572 0.83390 0.73241 0.73058 0.76554 1.21470 1.16861 1.23855 1.22109 0.86820 0.95327 0.97076 0.92358 0.92391 0.91877 0.91242 0.91895 0.91133 0.93307 0.93692 0.92221 0.94023 0.87303 0.89696 0.95315 0.93615 0.94369 0.94669 0.95733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.67 71.98 0.70 -1.19 16 2 C -0.12 -1.74 5.40 30.60 0.17 -1.58 16 3 C -0.09 -1.63 2.63 -10.79 -0.03 -1.66 16 4 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 5 C -0.14 -2.91 8.85 71.98 0.64 -2.28 16 6 C 0.06 1.35 5.20 71.98 0.37 1.72 16 7 O -0.38 -11.25 9.69 -148.98 -1.44 -12.70 16 8 C 0.09 2.96 3.49 31.99 0.11 3.07 16 9 H 0.08 2.49 7.90 -2.39 -0.02 2.47 16 10 C -0.11 -3.58 6.69 31.79 0.21 -3.37 16 11 C 0.10 4.22 4.61 86.73 0.40 4.62 16 12 N -0.63 -32.17 3.33 -691.96 -2.30 -34.47 16 13 C -0.32 -19.29 10.56 84.03 0.89 -18.40 16 14 H 0.04 2.91 8.06 -2.91 -0.02 2.89 16 15 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 16 N -0.96 -63.34 13.71 21.65 0.30 -63.05 16 17 Si 1.11 54.75 24.52 68.60 1.68 56.43 16 18 H -0.29 -13.51 6.82 99.48 0.68 -12.83 16 19 H -0.24 -10.38 5.41 99.48 0.54 -9.84 16 20 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 21 C 0.11 4.76 6.97 86.85 0.61 5.36 16 22 H 0.06 0.73 6.57 -2.38 -0.02 0.71 16 23 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 1.16 6.56 -2.39 -0.02 1.15 16 28 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.04 1.08 7.82 -2.39 -0.02 1.06 16 30 H 0.06 1.24 8.11 -2.38 -0.02 1.22 16 31 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.11 2.76 8.14 -2.38 -0.02 2.74 16 33 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.03 1.28 3.89 -2.39 -0.01 1.27 16 35 H 0.05 1.98 6.70 -2.39 -0.02 1.96 16 36 H 0.25 16.36 8.73 -92.71 -0.81 15.55 16 37 H 0.03 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -70.01 294.04 3.52 -66.49 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: 0.76 Total: 5.30 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: 4.53 Total: -18.01 kcal Atomic # 7 Polarization: -95.51 SS G_CDS: -2.01 Total: -97.51 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -1.44 Total: -12.70 kcal Atomic # 14 Polarization: 54.75 SS G_CDS: 1.68 Total: 56.43 kcal Total: -70.01 3.52 -66.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224663704.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.595 kcal (2) G-P(sol) polarization free energy of solvation -70.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds