Wall clock time and date at job start Sun Mar 29 2020 21:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47376 * 2 1 4 4 H 1.09000 * 109.47189 * 304.99831 * 3 2 1 5 5 O 1.42901 * 109.47169 * 65.00084 * 3 2 1 6 6 C 1.52998 * 109.47124 * 184.99776 * 3 2 1 7 7 N 1.46902 * 109.47018 * 180.02562 * 6 3 2 8 8 C 1.46907 * 111.00196 * 180.02562 * 7 6 3 9 9 H 1.09000 * 109.35189 * 324.82387 * 8 7 6 10 10 C 1.52956 * 109.41239 * 84.64247 * 8 7 6 11 11 C 1.53232 * 109.40174 * 183.70321 * 10 8 7 12 12 C 1.51337 * 108.68817 * 305.48622 * 11 10 8 13 13 C 1.37877 * 120.88937 * 231.26807 * 12 11 10 14 14 N 1.31511 * 119.99800 * 179.73431 * 13 12 11 15 15 Si 1.86805 * 120.00113 * 359.73139 * 13 12 11 16 16 H 1.48505 * 109.46966 * 60.00501 * 15 13 12 17 17 H 1.48503 * 109.46949 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47054 * 300.00289 * 15 13 12 19 19 C 1.51266 * 118.25863 * 51.00749 * 12 11 10 20 20 C 1.52955 * 109.41102 * 204.99969 * 8 7 6 21 21 H 1.08997 * 109.47108 * 300.00019 * 1 2 3 22 22 H 1.08996 * 109.47289 * 59.99849 * 1 2 3 23 23 H 1.09000 * 109.47221 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47108 * 239.99981 * 2 1 3 25 25 H 1.09006 * 109.47390 * 120.00157 * 2 1 3 26 26 H 0.96699 * 114.00257 * 59.99383 * 5 3 2 27 27 H 1.08999 * 109.46991 * 60.00443 * 6 3 2 28 28 H 1.08998 * 109.47809 * 299.99777 * 6 3 2 29 29 H 1.00897 * 111.00690 * 56.04593 * 7 6 3 30 30 H 1.09000 * 109.48686 * 303.68818 * 10 8 7 31 31 H 1.09000 * 109.47922 * 63.71608 * 10 8 7 32 32 H 1.09005 * 109.62412 * 65.09153 * 11 10 8 33 33 H 1.08998 * 109.62442 * 185.66185 * 11 10 8 34 34 H 0.97004 * 119.99918 * 179.97438 * 14 13 12 35 35 H 1.09002 * 109.62649 * 189.17517 * 19 12 11 36 36 H 1.09001 * 109.62544 * 68.79863 * 19 12 11 37 37 H 1.09001 * 109.48702 * 56.31369 * 20 8 7 38 38 H 1.09003 * 109.49443 * 296.27557 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6620 2.0814 1.2211 6 6 3.5648 1.4442 -0.1257 7 7 4.0546 2.8292 -0.1250 8 6 5.5181 2.8702 -0.2451 9 1 5.9482 2.0228 0.2888 10 6 5.9095 2.7923 -1.7217 11 6 7.4362 2.7418 -1.8417 12 6 8.0202 3.9267 -1.1032 13 6 8.9313 4.7623 -1.7137 14 7 9.4237 5.7899 -1.0572 15 14 9.4664 4.4345 -3.4732 16 1 8.2818 4.4809 -4.3676 17 1 10.4454 5.4690 -3.8936 18 1 10.0976 3.0931 -3.5569 19 6 7.5735 4.1740 0.3207 20 6 6.0418 4.1726 0.3623 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.0141 1.6542 2.0139 27 1 3.8531 0.9570 -1.0571 28 1 3.9995 0.9053 0.7161 29 1 3.7452 3.3219 0.6993 30 1 5.4800 1.8938 -2.1648 31 1 5.5324 3.6713 -2.2445 32 1 7.8080 1.8182 -1.3980 33 1 7.7226 2.7876 -2.8924 34 1 10.0650 6.3776 -1.4866 35 1 7.9481 5.1400 0.6593 36 1 7.9580 3.3852 0.9673 37 1 5.7061 4.2524 1.3962 38 1 5.6619 5.0193 -0.2097 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251803255.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:23 Heat of formation + Delta-G solvation = -84.187720 kcal Electronic energy + Delta-G solvation = -16254.907830 eV Core-core repulsion = 13709.687970 eV Total energy + Delta-G solvation = -2545.219860 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.50743 -37.03972 -33.90234 -32.90183 -31.50690 -29.68682 -28.26151 -26.02027 -22.98657 -21.63919 -21.21901 -21.08975 -19.09279 -16.45298 -16.19276 -15.94688 -15.23747 -14.45118 -14.25526 -14.01660 -13.52053 -13.24215 -12.65426 -12.51680 -12.21376 -12.18987 -11.96640 -11.70506 -11.32123 -11.13642 -10.90822 -10.75801 -10.67623 -10.50111 -10.07036 -9.97001 -9.80382 -9.58784 -8.86248 -8.61630 -8.43088 -7.89157 -6.06323 -3.96563 3.31954 3.38116 3.39850 4.20543 4.42188 4.52555 4.89679 4.98271 5.01909 5.23100 5.31411 5.43714 5.61698 5.70141 5.78037 5.79197 5.88863 5.98709 6.08571 6.20081 6.27612 6.58045 6.71137 6.83118 6.87898 6.99114 7.09235 7.11288 7.48324 7.57871 7.63610 7.71047 7.78707 7.88033 7.95109 8.43356 9.00583 9.58672 11.03683 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.051780 B = 0.005539 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.623254 B = 5054.042502 C = 5424.241408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.156 4.156 3 C 0.107 3.893 4 H 0.105 0.895 5 O -0.559 6.559 6 C 0.029 3.971 7 N -0.687 5.687 8 C 0.101 3.899 9 H 0.029 0.971 10 C -0.091 4.091 11 C -0.012 4.012 12 C -0.486 4.486 13 C 0.075 3.925 14 N -0.892 5.892 15 Si 0.891 3.109 16 H -0.274 1.274 17 H -0.292 1.292 18 H -0.276 1.276 19 C 0.012 3.988 20 C -0.108 4.108 21 H 0.059 0.941 22 H 0.054 0.946 23 H 0.050 0.950 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.368 0.632 27 H 0.077 0.923 28 H 0.024 0.976 29 H 0.340 0.660 30 H 0.027 0.973 31 H 0.057 0.943 32 H 0.014 0.986 33 H 0.024 0.976 34 H 0.264 0.736 35 H 0.057 0.943 36 H 0.000 1.000 37 H 0.026 0.974 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.814 -9.665 2.425 16.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.194 4.194 3 C 0.048 3.952 4 H 0.123 0.877 5 O -0.364 6.364 6 C -0.101 4.101 7 N -0.319 5.319 8 C -0.008 4.008 9 H 0.047 0.953 10 C -0.130 4.130 11 C -0.050 4.050 12 C -0.505 4.505 13 C -0.127 4.127 14 N -0.530 5.530 15 Si 0.720 3.280 16 H -0.199 1.199 17 H -0.219 1.219 18 H -0.201 1.201 19 C -0.026 4.026 20 C -0.146 4.146 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.215 0.785 27 H 0.095 0.905 28 H 0.042 0.958 29 H 0.158 0.842 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.032 0.968 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.019 0.981 37 H 0.045 0.955 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.104 -9.007 1.327 15.956 hybrid contribution 0.938 -0.884 0.208 1.306 sum -12.166 -9.892 1.535 15.755 Atomic orbital electron populations 1.21686 0.95197 1.01166 1.02405 1.22215 0.97014 0.97528 1.02645 1.22077 0.93321 0.92149 0.87675 0.87739 1.86604 1.76820 1.57321 1.15609 1.22654 0.94818 0.91623 1.01035 1.60524 1.12549 1.12664 1.46154 1.21446 0.84190 0.97745 0.97399 0.95298 1.21532 0.97925 0.99162 0.94380 1.19663 0.92047 0.97243 0.96091 1.20034 1.23154 1.09312 0.98032 1.24835 0.95603 0.94561 0.97712 1.69826 1.30331 1.15441 1.37383 0.86651 0.78376 0.77727 0.85271 1.19936 1.21880 1.20131 1.19351 0.89262 0.98442 0.95573 1.21803 1.00386 0.95984 0.96477 0.92162 0.92706 0.93084 0.91025 0.91893 0.78528 0.90465 0.95795 0.84175 0.95406 0.92469 0.96771 0.95759 0.92580 0.92400 0.98126 0.95495 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.81 37.15 0.36 -0.92 16 2 C -0.16 -1.44 5.61 -26.73 -0.15 -1.59 16 3 C 0.11 1.23 3.24 -26.73 -0.09 1.14 16 4 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 5 O -0.56 -6.55 12.21 -35.23 -0.43 -6.98 16 6 C 0.03 0.39 5.19 -3.82 -0.02 0.37 16 7 N -0.69 -11.47 6.31 -106.77 -0.67 -12.14 16 8 C 0.10 1.99 2.39 -67.75 -0.16 1.82 16 9 H 0.03 0.59 7.79 -51.93 -0.40 0.18 16 10 C -0.09 -1.94 5.46 -26.63 -0.15 -2.09 16 11 C -0.01 -0.30 5.58 -27.45 -0.15 -0.45 16 12 C -0.49 -13.09 5.53 -98.89 -0.55 -13.63 16 13 C 0.08 2.10 5.46 -17.82 -0.10 2.00 16 14 N -0.89 -26.10 12.73 55.43 0.71 -25.40 16 15 Si 0.89 21.69 26.81 -169.99 -4.56 17.14 16 16 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C 0.01 0.29 5.96 -27.48 -0.16 0.13 16 20 C -0.11 -2.35 5.24 -26.63 -0.14 -2.49 16 21 H 0.06 0.55 7.82 -51.93 -0.41 0.14 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.37 3.14 9.05 45.56 0.41 3.55 16 27 H 0.08 1.08 7.35 -51.93 -0.38 0.70 16 28 H 0.02 0.31 8.05 -51.93 -0.42 -0.10 16 29 H 0.34 5.49 7.69 -39.29 -0.30 5.19 16 30 H 0.03 0.53 7.35 -51.93 -0.38 0.15 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.02 0.57 5.18 -51.93 -0.27 0.30 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.06 1.60 7.07 -51.93 -0.37 1.24 16 36 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 37 H 0.03 0.52 8.05 -51.93 -0.42 0.10 16 38 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 295.84 15.07 4.46 4.46 Total: -1.00 -28.98 295.84 -7.67 -36.65 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.88 Total: 1.98 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -1.30 Total: -15.70 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.03 Total: -37.54 kcal Atomic # 8 Polarization: -6.55 SS G_CDS: -0.43 Total: -6.98 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.56 Total: 17.14 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.98 -7.67 -36.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251803255.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.538 kcal (2) G-P(sol) polarization free energy of solvation -28.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds