Wall clock time and date at job start Sun Mar 29 2020 21:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47376 * 2 1 4 4 H 1.09000 * 109.47189 * 304.99831 * 3 2 1 5 5 O 1.42901 * 109.47169 * 65.00084 * 3 2 1 6 6 C 1.52998 * 109.47124 * 184.99776 * 3 2 1 7 7 N 1.46902 * 109.47018 * 180.02562 * 6 3 2 8 8 C 1.46907 * 111.00196 * 180.02562 * 7 6 3 9 9 H 1.09000 * 109.35189 * 324.82387 * 8 7 6 10 10 C 1.52956 * 109.41239 * 84.64247 * 8 7 6 11 11 C 1.53232 * 109.40174 * 183.70321 * 10 8 7 12 12 C 1.51337 * 108.68817 * 305.48622 * 11 10 8 13 13 C 1.37877 * 120.88937 * 231.26807 * 12 11 10 14 14 N 1.31511 * 119.99800 * 179.73431 * 13 12 11 15 15 Si 1.86805 * 120.00113 * 359.73139 * 13 12 11 16 16 H 1.48505 * 109.46966 * 60.00501 * 15 13 12 17 17 H 1.48503 * 109.46949 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47054 * 300.00289 * 15 13 12 19 19 C 1.51266 * 118.25863 * 51.00749 * 12 11 10 20 20 C 1.52955 * 109.41102 * 204.99969 * 8 7 6 21 21 H 1.08997 * 109.47108 * 300.00019 * 1 2 3 22 22 H 1.08996 * 109.47289 * 59.99849 * 1 2 3 23 23 H 1.09000 * 109.47221 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47108 * 239.99981 * 2 1 3 25 25 H 1.09006 * 109.47390 * 120.00157 * 2 1 3 26 26 H 0.96699 * 114.00257 * 59.99383 * 5 3 2 27 27 H 1.08999 * 109.46991 * 60.00443 * 6 3 2 28 28 H 1.08998 * 109.47809 * 299.99777 * 6 3 2 29 29 H 1.00897 * 111.00690 * 56.04593 * 7 6 3 30 30 H 1.09000 * 109.48686 * 303.68818 * 10 8 7 31 31 H 1.09000 * 109.47922 * 63.71608 * 10 8 7 32 32 H 1.09005 * 109.62412 * 65.09153 * 11 10 8 33 33 H 1.08998 * 109.62442 * 185.66185 * 11 10 8 34 34 H 0.97004 * 119.99918 * 179.97438 * 14 13 12 35 35 H 1.09002 * 109.62649 * 189.17517 * 19 12 11 36 36 H 1.09001 * 109.62544 * 68.79863 * 19 12 11 37 37 H 1.09001 * 109.48702 * 56.31369 * 20 8 7 38 38 H 1.09003 * 109.49443 * 296.27557 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6620 2.0814 1.2211 6 6 3.5648 1.4442 -0.1257 7 7 4.0546 2.8292 -0.1250 8 6 5.5181 2.8702 -0.2451 9 1 5.9482 2.0228 0.2888 10 6 5.9095 2.7923 -1.7217 11 6 7.4362 2.7418 -1.8417 12 6 8.0202 3.9267 -1.1032 13 6 8.9313 4.7623 -1.7137 14 7 9.4237 5.7899 -1.0572 15 14 9.4664 4.4345 -3.4732 16 1 8.2818 4.4809 -4.3676 17 1 10.4454 5.4690 -3.8936 18 1 10.0976 3.0931 -3.5569 19 6 7.5735 4.1740 0.3207 20 6 6.0418 4.1726 0.3623 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.0141 1.6542 2.0139 27 1 3.8531 0.9570 -1.0571 28 1 3.9995 0.9053 0.7161 29 1 3.7452 3.3219 0.6993 30 1 5.4800 1.8938 -2.1648 31 1 5.5324 3.6713 -2.2445 32 1 7.8080 1.8182 -1.3980 33 1 7.7226 2.7876 -2.8924 34 1 10.0650 6.3776 -1.4866 35 1 7.9481 5.1400 0.6593 36 1 7.9580 3.3852 0.9673 37 1 5.7061 4.2524 1.3962 38 1 5.6619 5.0193 -0.2097 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001251803255.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:23 Heat of formation + Delta-G solvation = -105.012324 kcal Electronic energy + Delta-G solvation = -16255.810853 eV Core-core repulsion = 13709.687970 eV Total energy + Delta-G solvation = -2546.122883 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.69456 -38.46446 -35.53035 -33.76409 -33.24408 -31.51641 -29.70054 -27.47985 -24.24971 -23.29768 -22.75030 -22.21815 -20.83197 -18.07696 -17.24363 -17.15833 -16.42072 -16.39954 -15.52691 -15.20869 -14.96376 -14.54049 -14.42568 -14.19185 -13.79792 -13.27297 -13.15136 -12.91598 -12.80119 -12.65551 -12.51791 -12.29739 -11.90401 -11.81713 -11.77707 -11.61462 -11.46567 -10.96712 -10.64376 -10.53743 -10.48830 -9.24674 -8.17341 -6.10906 1.39062 1.39970 1.48217 2.40596 3.03634 3.21362 3.63527 3.94633 4.10902 4.16075 4.17464 4.26012 4.42003 4.57544 4.65060 4.75912 4.80519 4.90756 4.94960 4.95541 5.04412 5.12581 5.14007 5.22055 5.26215 5.27180 5.36590 5.42811 5.61979 5.62666 5.76065 5.88568 6.24754 6.36260 6.59736 6.89017 6.95160 7.46789 8.94084 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.051780 B = 0.005539 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.623254 B = 5054.042502 C = 5424.241408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.149 4.149 3 C 0.116 3.884 4 H 0.091 0.909 5 O -0.573 6.573 6 C 0.029 3.971 7 N -0.690 5.690 8 C 0.112 3.888 9 H 0.030 0.970 10 C -0.086 4.086 11 C -0.015 4.015 12 C -0.499 4.499 13 C 0.019 3.981 14 N -0.934 5.934 15 Si 0.944 3.056 16 H -0.266 1.266 17 H -0.293 1.293 18 H -0.265 1.265 19 C 0.008 3.992 20 C -0.098 4.098 21 H 0.054 0.946 22 H 0.050 0.950 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.383 0.617 27 H 0.076 0.924 28 H 0.035 0.965 29 H 0.344 0.656 30 H 0.053 0.947 31 H 0.040 0.960 32 H 0.021 0.979 33 H 0.025 0.975 34 H 0.263 0.737 35 H 0.024 0.976 36 H -0.001 1.001 37 H 0.048 0.952 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.240 -11.634 2.048 18.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.188 4.188 3 C 0.056 3.944 4 H 0.109 0.891 5 O -0.379 6.379 6 C -0.100 4.100 7 N -0.322 5.322 8 C 0.003 3.997 9 H 0.048 0.952 10 C -0.125 4.125 11 C -0.053 4.053 12 C -0.519 4.519 13 C -0.178 4.178 14 N -0.574 5.574 15 Si 0.771 3.229 16 H -0.192 1.192 17 H -0.220 1.220 18 H -0.190 1.190 19 C -0.030 4.030 20 C -0.137 4.137 21 H 0.073 0.927 22 H 0.069 0.931 23 H 0.082 0.918 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.231 0.769 27 H 0.094 0.906 28 H 0.053 0.947 29 H 0.163 0.837 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.039 0.961 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.043 0.957 36 H 0.017 0.983 37 H 0.067 0.933 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -14.548 -11.002 0.958 18.265 hybrid contribution 1.350 -0.289 0.416 1.442 sum -13.197 -11.291 1.374 17.423 Atomic orbital electron populations 1.21674 0.94840 1.01884 1.01945 1.22154 0.97227 0.95869 1.03500 1.21937 0.91662 0.93434 0.87341 0.89142 1.86575 1.77014 1.58024 1.16309 1.22748 0.96218 0.89664 1.01410 1.60418 1.10232 1.14962 1.46631 1.21171 0.86213 0.96209 0.96131 0.95203 1.21424 0.95953 0.99621 0.95496 1.19695 0.93836 0.96028 0.95742 1.20681 1.22491 1.09927 0.98778 1.25625 0.96115 0.94690 1.01414 1.69966 1.31589 1.16802 1.39019 0.85780 0.78167 0.77882 0.81087 1.19164 1.21985 1.19026 1.19321 0.92032 0.96474 0.95198 1.21612 0.97490 0.96741 0.97838 0.92708 0.93115 0.91786 0.90463 0.90735 0.76858 0.90592 0.94679 0.83689 0.92825 0.94105 0.96056 0.95607 0.92826 0.95716 0.98280 0.93323 0.94209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.81 71.98 0.71 -1.47 16 2 C -0.15 -2.31 5.61 30.59 0.17 -2.14 16 3 C 0.12 2.36 3.24 30.59 0.10 2.46 16 4 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 5 O -0.57 -12.02 12.21 -148.98 -1.82 -13.84 16 6 C 0.03 0.71 5.19 86.30 0.45 1.15 16 7 N -0.69 -21.44 6.31 -491.71 -3.10 -24.54 16 8 C 0.11 4.20 2.39 44.88 0.11 4.31 16 9 H 0.03 1.13 7.79 -2.39 -0.02 1.11 16 10 C -0.09 -3.50 5.46 30.66 0.17 -3.33 16 11 C -0.01 -0.69 5.58 30.13 0.17 -0.52 16 12 C -0.50 -26.92 5.53 -16.15 -0.09 -27.01 16 13 C 0.02 1.09 5.46 84.66 0.46 1.55 16 14 N -0.93 -56.14 12.73 21.45 0.27 -55.87 16 15 Si 0.94 44.46 26.81 68.60 1.84 46.30 16 16 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 17 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 C 0.01 0.40 5.96 30.11 0.18 0.58 16 20 C -0.10 -4.22 5.24 30.66 0.16 -4.06 16 21 H 0.05 0.88 7.82 -2.39 -0.02 0.86 16 22 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 26 H 0.38 5.45 9.05 -74.06 -0.67 4.78 16 27 H 0.08 1.88 7.35 -2.39 -0.02 1.86 16 28 H 0.04 0.79 8.05 -2.39 -0.02 0.78 16 29 H 0.34 10.32 7.69 -89.70 -0.69 9.63 16 30 H 0.05 1.89 7.35 -2.39 -0.02 1.88 16 31 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.03 1.16 5.18 -2.39 -0.01 1.15 16 34 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 35 H 0.02 1.40 7.07 -2.39 -0.02 1.38 16 36 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 37 H 0.05 1.84 8.05 -2.39 -0.02 1.82 16 38 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -61.86 295.84 -0.55 -62.41 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -0.32 Total: 14.02 kcal Atomic # 6 Polarization: -31.07 SS G_CDS: 2.58 Total: -28.49 kcal Atomic # 7 Polarization: -77.58 SS G_CDS: -2.83 Total: -80.41 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -1.82 Total: -13.84 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.84 Total: 46.30 kcal Total: -61.86 -0.55 -62.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251803255.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.599 kcal (2) G-P(sol) polarization free energy of solvation -61.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds