Wall clock time and date at job start Sun Mar 29 2020 21:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46799 * 2 1 4 4 O 1.42898 * 109.47475 * 240.00024 * 2 1 3 5 5 C 1.52997 * 109.47162 * 119.99707 * 2 1 3 6 6 N 1.46900 * 109.47177 * 60.00514 * 5 2 1 7 7 C 1.46896 * 111.00102 * 184.66335 * 6 5 2 8 8 C 1.50707 * 110.01823 * 58.44797 * 7 6 5 9 9 H 1.07997 * 119.99510 * 237.31600 * 8 7 6 10 10 C 1.37871 * 119.99896 * 57.31805 * 8 7 6 11 11 N 1.31517 * 119.99973 * 354.31869 * 10 8 7 12 12 Si 1.86801 * 120.00009 * 174.32148 * 10 8 7 13 13 H 1.48503 * 109.46980 * 59.99827 * 12 10 8 14 14 H 1.48499 * 109.47127 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46950 * 299.99738 * 12 10 8 16 16 C 1.54260 * 110.03358 * 179.88999 * 7 6 5 17 17 C 1.54891 * 104.19582 * 142.89246 * 16 7 6 18 18 C 1.54886 * 102.75174 * 322.05797 * 17 16 7 19 19 C 1.53874 * 110.03055 * 297.05649 * 7 6 5 20 20 H 1.09001 * 109.47163 * 299.99927 * 1 2 3 21 21 H 1.08998 * 109.47597 * 60.00435 * 1 2 3 22 22 H 1.09007 * 109.46962 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47136 * 179.97438 * 3 2 1 24 24 H 1.08999 * 109.47038 * 299.99704 * 3 2 1 25 25 H 1.09001 * 109.47203 * 60.00098 * 3 2 1 26 26 H 0.96695 * 114.00585 * 180.02562 * 4 2 1 27 27 H 1.09001 * 109.47381 * 300.00233 * 5 2 1 28 28 H 1.09004 * 109.47039 * 180.02562 * 5 2 1 29 29 H 1.00899 * 111.00085 * 60.70713 * 6 5 2 30 30 H 0.97000 * 120.00065 * 179.97438 * 11 10 8 31 31 H 1.09001 * 110.48563 * 24.21880 * 16 7 6 32 32 H 1.09002 * 110.49275 * 261.57031 * 16 7 6 33 33 H 1.09007 * 110.75761 * 203.74248 * 17 16 7 34 34 H 1.09005 * 110.75762 * 80.37644 * 17 16 7 35 35 H 1.08997 * 110.48533 * 156.62091 * 18 17 16 36 36 H 1.08998 * 110.48479 * 279.13403 * 18 17 16 37 37 H 1.09000 * 110.03071 * 121.43348 * 19 7 6 38 38 H 1.08995 * 110.03466 * 359.97438 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0400 -0.7212 1.2492 6 7 1.5504 -2.1062 1.2493 7 6 1.9282 -2.7981 2.4888 8 6 1.3703 -2.0633 3.6804 9 1 2.0336 -1.7108 4.4564 10 6 0.0133 -1.8411 3.7798 11 7 -0.7815 -2.1699 2.7849 12 14 -0.6965 -1.0729 5.3276 13 1 -0.0970 0.2700 5.5334 14 1 -2.1686 -0.9407 5.1843 15 1 -0.3880 -1.9370 6.4953 16 6 1.4014 -4.2478 2.4664 17 6 2.5198 -5.0691 3.1546 18 6 3.8114 -4.3907 2.6345 19 6 3.4606 -2.8889 2.5956 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 3.1299 1.4426 0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 2.9703 -0.7121 -1.2327 27 1 1.6766 -0.2073 2.1392 28 1 3.1300 -0.7208 1.2495 29 1 1.8835 -2.6075 0.4394 30 1 -1.7363 -2.0139 2.8550 31 1 1.2567 -4.5853 1.4402 32 1 0.4708 -4.3243 3.0290 33 1 2.4797 -6.1130 2.8435 34 1 2.4492 -4.9851 4.2391 35 1 4.6397 -4.5714 3.3196 36 1 4.0572 -4.7530 1.6363 37 1 3.8006 -2.4023 3.5098 38 1 3.9239 -2.4200 1.7275 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252371418.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:43 Heat of formation + Delta-G solvation = -61.738465 kcal Electronic energy + Delta-G solvation = -17361.437654 eV Core-core repulsion = 14817.191266 eV Total energy + Delta-G solvation = -2544.246387 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.30306 -37.01398 -33.02647 -32.02170 -30.96307 -27.54889 -27.01519 -26.50531 -24.49318 -22.87872 -19.94426 -19.33090 -18.57346 -16.06386 -15.78582 -14.78413 -14.70554 -14.43322 -14.05842 -13.48226 -13.26089 -12.54200 -12.32622 -12.03744 -11.73117 -11.57853 -11.37396 -10.97021 -10.90579 -10.87197 -10.49639 -10.45565 -10.21997 -10.15123 -9.94357 -9.83489 -9.63993 -9.38377 -8.99518 -8.71880 -8.25528 -6.62457 -5.75173 -3.90282 3.35287 3.41189 3.44586 4.51842 4.83338 5.30924 5.47027 5.56534 5.66041 5.74483 5.78723 5.81816 6.08024 6.13396 6.27528 6.38960 6.44658 6.48196 6.66332 6.71549 6.73710 6.76020 6.81481 6.83941 6.97294 7.00104 7.13882 7.33490 7.39430 7.45284 7.85528 7.95398 8.24176 8.37536 8.77900 8.98753 9.32158 9.74716 11.23512 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.018554 B = 0.013626 C = 0.009203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.771903 B = 2054.327752 C = 3041.798912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.126 3.874 3 C -0.175 4.175 4 O -0.563 6.563 5 C 0.059 3.941 6 N -0.632 5.632 7 C 0.246 3.754 8 C -0.523 4.523 9 H 0.048 0.952 10 C 0.086 3.914 11 N -0.830 5.830 12 Si 0.868 3.132 13 H -0.281 1.281 14 H -0.289 1.289 15 H -0.280 1.280 16 C -0.087 4.087 17 C -0.123 4.123 18 C -0.120 4.120 19 C -0.149 4.149 20 H 0.061 0.939 21 H 0.031 0.969 22 H 0.088 0.912 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.361 0.639 27 H 0.087 0.913 28 H -0.002 1.002 29 H 0.301 0.699 30 H 0.252 0.748 31 H 0.034 0.966 32 H 0.073 0.927 33 H 0.043 0.957 34 H 0.060 0.940 35 H 0.044 0.956 36 H 0.048 0.952 37 H 0.053 0.947 38 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.389 1.581 -3.635 6.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.086 3.914 3 C -0.233 4.233 4 O -0.367 6.367 5 C -0.071 4.071 6 N -0.260 5.260 7 C 0.157 3.843 8 C -0.562 4.562 9 H 0.066 0.934 10 C -0.121 4.121 11 N -0.464 5.464 12 Si 0.696 3.304 13 H -0.207 1.207 14 H -0.215 1.215 15 H -0.206 1.206 16 C -0.126 4.126 17 C -0.161 4.161 18 C -0.158 4.158 19 C -0.189 4.189 20 H 0.079 0.921 21 H 0.050 0.950 22 H 0.107 0.893 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.207 0.793 27 H 0.105 0.895 28 H 0.015 0.985 29 H 0.118 0.882 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.874 1.695 -3.595 5.550 hybrid contribution 1.248 0.523 0.977 1.670 sum 5.122 2.218 -2.617 6.165 Atomic orbital electron populations 1.21457 0.91809 1.04563 0.99326 1.21444 0.95963 0.89087 0.84953 1.22474 1.00555 0.98243 1.02024 1.86559 1.25134 1.79992 1.45049 1.22250 0.94015 0.93414 0.97462 1.60551 1.62520 0.99881 1.03051 1.19109 0.85609 0.91003 0.88618 1.20828 0.91878 1.38929 1.04534 0.93412 1.24883 0.97301 0.95215 0.94670 1.70167 1.03117 1.44558 1.28533 0.87094 0.78131 0.79915 0.85260 1.20698 1.21490 1.20589 1.22185 0.97645 0.95200 0.97553 1.22471 0.96052 0.97239 1.00316 1.22273 0.97260 0.97192 0.99044 1.23077 1.01823 0.94427 0.99603 0.92053 0.94993 0.89320 0.93265 0.92685 0.91806 0.79331 0.89483 0.98457 0.88205 0.93808 0.94694 0.90820 0.93857 0.92133 0.93754 0.93337 0.92861 0.94461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.24 8.69 37.16 0.32 -1.92 16 2 C 0.13 2.27 1.17 -90.62 -0.11 2.17 16 3 C -0.17 -2.66 8.82 37.16 0.33 -2.33 16 4 O -0.56 -9.79 12.40 -35.23 -0.44 -10.23 16 5 C 0.06 1.20 4.22 -3.83 -0.02 1.19 16 6 N -0.63 -14.07 4.28 -100.00 -0.43 -14.50 16 7 C 0.25 5.66 0.42 -131.64 -0.06 5.61 16 8 C -0.52 -13.49 6.51 -34.44 -0.22 -13.71 16 9 H 0.05 1.27 7.33 -52.49 -0.38 0.88 16 10 C 0.09 2.25 4.92 -17.82 -0.09 2.16 16 11 N -0.83 -22.14 11.63 55.43 0.64 -21.49 16 12 Si 0.87 20.56 29.54 -169.99 -5.02 15.54 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 C -0.09 -1.98 5.68 -25.07 -0.14 -2.12 16 17 C -0.12 -2.39 6.91 -24.74 -0.17 -2.57 16 18 C -0.12 -2.19 6.83 -25.07 -0.17 -2.37 16 19 C -0.15 -3.07 5.64 -25.61 -0.14 -3.22 16 20 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 21 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.09 2.00 7.60 -51.92 -0.39 1.61 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.36 4.95 9.05 45.56 0.41 5.36 16 27 H 0.09 2.04 6.90 -51.93 -0.36 1.68 16 28 H 0.00 -0.05 6.65 -51.93 -0.35 -0.39 16 29 H 0.30 6.56 8.12 -39.29 -0.32 6.24 16 30 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 31 H 0.03 0.78 7.92 -51.93 -0.41 0.37 16 32 H 0.07 1.88 6.84 -51.93 -0.36 1.52 16 33 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.05 1.14 7.37 -51.93 -0.38 0.76 16 38 H 0.04 0.73 6.58 -51.93 -0.34 0.39 16 LS Contribution 294.92 15.07 4.44 4.44 Total: -1.00 -26.66 294.92 -7.09 -33.75 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -5.82 Total: 9.59 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -0.47 Total: -17.10 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.22 Total: -35.99 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -0.44 Total: -10.23 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -26.66 -7.09 -33.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252371418.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.993 kcal (2) G-P(sol) polarization free energy of solvation -26.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds