Wall clock time and date at job start Sun Mar 29 2020 21:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46799 * 2 1 4 4 O 1.42898 * 109.47475 * 240.00024 * 2 1 3 5 5 C 1.52997 * 109.47162 * 119.99707 * 2 1 3 6 6 N 1.46900 * 109.47177 * 60.00514 * 5 2 1 7 7 C 1.46896 * 111.00102 * 184.66335 * 6 5 2 8 8 C 1.50707 * 110.01823 * 58.44797 * 7 6 5 9 9 H 1.07997 * 119.99510 * 237.31600 * 8 7 6 10 10 C 1.37871 * 119.99896 * 57.31805 * 8 7 6 11 11 N 1.31517 * 119.99973 * 354.31869 * 10 8 7 12 12 Si 1.86801 * 120.00009 * 174.32148 * 10 8 7 13 13 H 1.48503 * 109.46980 * 59.99827 * 12 10 8 14 14 H 1.48499 * 109.47127 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46950 * 299.99738 * 12 10 8 16 16 C 1.54260 * 110.03358 * 179.88999 * 7 6 5 17 17 C 1.54891 * 104.19582 * 142.89246 * 16 7 6 18 18 C 1.54886 * 102.75174 * 322.05797 * 17 16 7 19 19 C 1.53874 * 110.03055 * 297.05649 * 7 6 5 20 20 H 1.09001 * 109.47163 * 299.99927 * 1 2 3 21 21 H 1.08998 * 109.47597 * 60.00435 * 1 2 3 22 22 H 1.09007 * 109.46962 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47136 * 179.97438 * 3 2 1 24 24 H 1.08999 * 109.47038 * 299.99704 * 3 2 1 25 25 H 1.09001 * 109.47203 * 60.00098 * 3 2 1 26 26 H 0.96695 * 114.00585 * 180.02562 * 4 2 1 27 27 H 1.09001 * 109.47381 * 300.00233 * 5 2 1 28 28 H 1.09004 * 109.47039 * 180.02562 * 5 2 1 29 29 H 1.00899 * 111.00085 * 60.70713 * 6 5 2 30 30 H 0.97000 * 120.00065 * 179.97438 * 11 10 8 31 31 H 1.09001 * 110.48563 * 24.21880 * 16 7 6 32 32 H 1.09002 * 110.49275 * 261.57031 * 16 7 6 33 33 H 1.09007 * 110.75761 * 203.74248 * 17 16 7 34 34 H 1.09005 * 110.75762 * 80.37644 * 17 16 7 35 35 H 1.08997 * 110.48533 * 156.62091 * 18 17 16 36 36 H 1.08998 * 110.48479 * 279.13403 * 18 17 16 37 37 H 1.09000 * 110.03071 * 121.43348 * 19 7 6 38 38 H 1.08995 * 110.03466 * 359.97438 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0400 -0.7212 1.2492 6 7 1.5504 -2.1062 1.2493 7 6 1.9282 -2.7981 2.4888 8 6 1.3703 -2.0633 3.6804 9 1 2.0336 -1.7108 4.4564 10 6 0.0133 -1.8411 3.7798 11 7 -0.7815 -2.1699 2.7849 12 14 -0.6965 -1.0729 5.3276 13 1 -0.0970 0.2700 5.5334 14 1 -2.1686 -0.9407 5.1843 15 1 -0.3880 -1.9370 6.4953 16 6 1.4014 -4.2478 2.4664 17 6 2.5198 -5.0691 3.1546 18 6 3.8114 -4.3907 2.6345 19 6 3.4606 -2.8889 2.5956 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 3.1299 1.4426 0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 2.9703 -0.7121 -1.2327 27 1 1.6766 -0.2073 2.1392 28 1 3.1300 -0.7208 1.2495 29 1 1.8835 -2.6075 0.4394 30 1 -1.7363 -2.0139 2.8550 31 1 1.2567 -4.5853 1.4402 32 1 0.4708 -4.3243 3.0290 33 1 2.4797 -6.1130 2.8435 34 1 2.4492 -4.9851 4.2391 35 1 4.6397 -4.5714 3.3196 36 1 4.0572 -4.7530 1.6363 37 1 3.8006 -2.4023 3.5098 38 1 3.9239 -2.4200 1.7275 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252371418.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:43 Heat of formation + Delta-G solvation = -79.361491 kcal Electronic energy + Delta-G solvation = -17362.201845 eV Core-core repulsion = 14817.191266 eV Total energy + Delta-G solvation = -2545.010579 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.92099 -38.54928 -34.68778 -33.84538 -32.51991 -29.23023 -28.70533 -28.00596 -26.32406 -24.55034 -21.51383 -20.85937 -20.36807 -17.89948 -17.34240 -16.60205 -16.30951 -16.06024 -15.68121 -14.99301 -14.86033 -14.19677 -14.03107 -13.65460 -13.28349 -13.07366 -12.90363 -12.82565 -12.59743 -12.40727 -12.33190 -12.28204 -11.85075 -11.71288 -11.51464 -11.44164 -11.33057 -11.13368 -10.65045 -10.49643 -10.25085 -8.35313 -7.75488 -5.95488 1.42246 1.46291 1.49784 2.53495 3.35334 3.51188 3.88815 4.14265 4.17174 4.21267 4.24062 4.31380 4.58251 4.75768 4.83020 4.87402 4.99445 5.05481 5.06560 5.11695 5.15117 5.18244 5.23815 5.29200 5.36255 5.37316 5.47303 5.60934 5.71553 5.75187 5.86062 6.03856 6.45214 6.88412 7.02051 7.16335 7.52442 7.71475 9.19258 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.018554 B = 0.013626 C = 0.009203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.771903 B = 2054.327752 C = 3041.798912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.132 3.868 3 C -0.167 4.167 4 O -0.570 6.570 5 C 0.067 3.933 6 N -0.643 5.643 7 C 0.237 3.763 8 C -0.531 4.531 9 H 0.033 0.967 10 C 0.053 3.947 11 N -0.846 5.846 12 Si 0.913 3.087 13 H -0.281 1.281 14 H -0.290 1.290 15 H -0.281 1.281 16 C -0.086 4.086 17 C -0.118 4.118 18 C -0.111 4.111 19 C -0.145 4.145 20 H 0.046 0.954 21 H 0.049 0.951 22 H 0.054 0.946 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.380 0.620 27 H 0.053 0.947 28 H 0.009 0.991 29 H 0.305 0.695 30 H 0.247 0.753 31 H 0.032 0.968 32 H 0.037 0.963 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.038 0.962 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.904 1.689 -4.352 8.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.091 3.909 3 C -0.225 4.225 4 O -0.377 6.377 5 C -0.063 4.063 6 N -0.272 5.272 7 C 0.147 3.853 8 C -0.570 4.570 9 H 0.051 0.949 10 C -0.152 4.152 11 N -0.480 5.480 12 Si 0.741 3.259 13 H -0.207 1.207 14 H -0.216 1.216 15 H -0.207 1.207 16 C -0.124 4.124 17 C -0.155 4.155 18 C -0.149 4.149 19 C -0.185 4.185 20 H 0.065 0.935 21 H 0.068 0.932 22 H 0.073 0.927 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.228 0.772 27 H 0.071 0.929 28 H 0.027 0.973 29 H 0.122 0.878 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.409 1.805 -4.308 7.147 hybrid contribution 0.782 0.480 1.194 1.505 sum 6.191 2.285 -3.115 7.297 Atomic orbital electron populations 1.21330 0.93362 1.02339 0.99471 1.21264 0.94818 0.90676 0.84104 1.22374 1.01770 0.95845 1.02527 1.86518 1.27010 1.80043 1.44139 1.22143 0.94439 0.92357 0.97345 1.60426 1.63241 1.00697 1.02788 1.19135 0.87323 0.90786 0.88030 1.21029 0.91852 1.38841 1.05260 0.94865 1.25317 0.97701 0.95799 0.96430 1.70274 1.02766 1.45465 1.29529 0.86370 0.77382 0.79162 0.82949 1.20659 1.21579 1.20710 1.22076 0.97261 0.95964 0.97142 1.22419 0.95402 0.98291 0.99429 1.22232 0.97062 0.94947 1.00623 1.22943 0.99816 0.96396 0.99304 0.93454 0.93222 0.92668 0.91328 0.91286 0.92202 0.77210 0.92895 0.97346 0.87792 0.94388 0.94885 0.94435 0.91387 0.93122 0.91675 0.91457 0.94263 0.93437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.20 8.69 71.98 0.63 -3.58 16 2 C 0.13 4.59 1.17 -10.79 -0.01 4.58 16 3 C -0.17 -4.68 8.82 71.98 0.63 -4.04 16 4 O -0.57 -18.53 12.40 -148.98 -1.85 -20.38 16 5 C 0.07 2.72 4.22 86.30 0.36 3.08 16 6 N -0.64 -28.56 4.28 -470.30 -2.01 -30.57 16 7 C 0.24 10.88 0.42 3.51 0.00 10.88 16 8 C -0.53 -27.79 6.51 25.60 0.17 -27.63 16 9 H 0.03 1.79 7.33 -2.91 -0.02 1.77 16 10 C 0.05 2.79 4.92 84.65 0.42 3.21 16 11 N -0.85 -46.24 11.63 21.45 0.25 -45.99 16 12 Si 0.91 42.93 29.54 68.60 2.03 44.96 16 13 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 14 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 15 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 16 C -0.09 -3.88 5.68 31.67 0.18 -3.70 16 17 C -0.12 -4.38 6.91 31.88 0.22 -4.16 16 18 C -0.11 -3.74 6.83 31.67 0.22 -3.52 16 19 C -0.14 -5.73 5.64 31.32 0.18 -5.55 16 20 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 21 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.05 2.52 7.60 -2.38 -0.02 2.50 16 23 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.38 9.23 9.05 -74.06 -0.67 8.56 16 27 H 0.05 2.50 6.90 -2.39 -0.02 2.49 16 28 H 0.01 0.33 6.65 -2.39 -0.02 0.31 16 29 H 0.31 13.03 8.12 -89.69 -0.73 12.31 16 30 H 0.25 13.33 8.31 -92.71 -0.77 12.56 16 31 H 0.03 1.47 7.92 -2.39 -0.02 1.45 16 32 H 0.04 1.94 6.84 -2.39 -0.02 1.92 16 33 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 34 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.04 1.63 7.37 -2.39 -0.02 1.62 16 38 H 0.05 1.75 6.58 -2.39 -0.02 1.74 16 Total: -1.00 -57.22 294.92 1.04 -56.18 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: -0.36 Total: 26.23 kcal Atomic # 6 Polarization: -33.42 SS G_CDS: 2.99 Total: -30.43 kcal Atomic # 7 Polarization: -74.80 SS G_CDS: -1.77 Total: -76.56 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -1.85 Total: -20.38 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -57.22 1.04 -56.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252371418.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.182 kcal (2) G-P(sol) polarization free energy of solvation -57.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds