Wall clock time and date at job start Sun Mar 29 2020 21:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47194 * 2 1 4 4 C 1.53003 * 109.47349 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47091 * 180.02562 * 4 3 2 6 6 C 1.36938 * 119.99936 * 264.52080 * 5 4 3 7 7 H 1.07994 * 120.00344 * 146.49691 * 6 5 4 8 8 C 1.38811 * 119.99830 * 326.48505 * 6 5 4 9 9 N 1.31618 * 120.00259 * 337.38901 * 8 6 5 10 10 Si 1.86800 * 119.99964 * 157.38902 * 8 6 5 11 11 H 1.48498 * 109.47172 * 60.00072 * 10 8 6 12 12 H 1.48501 * 109.47135 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47003 * 300.00028 * 10 8 6 14 14 C 1.46497 * 120.00222 * 84.51550 * 5 4 3 15 15 H 1.09005 * 109.57375 * 359.84402 * 14 5 4 16 16 C 1.53183 * 109.52150 * 119.99787 * 14 5 4 17 17 C 1.53178 * 109.10755 * 176.93403 * 16 14 5 18 18 C 1.53097 * 109.16395 * 302.97424 * 17 16 14 19 19 O 1.42904 * 109.41241 * 57.61187 * 18 17 16 20 20 C 1.42906 * 114.09944 * 298.84174 * 19 18 17 21 21 H 1.08996 * 109.47343 * 59.99843 * 1 2 3 22 22 H 1.09003 * 109.47303 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47191 * 299.99183 * 1 2 3 24 24 H 1.09002 * 109.47191 * 240.00816 * 2 1 3 25 25 H 1.08997 * 109.47528 * 120.00675 * 2 1 3 26 26 H 1.09002 * 109.46385 * 60.00322 * 3 2 1 27 27 H 1.08997 * 109.47434 * 300.00733 * 3 2 1 28 28 H 1.09001 * 109.46621 * 60.00576 * 4 3 2 29 29 H 1.08995 * 109.46784 * 300.00408 * 4 3 2 30 30 H 0.97003 * 120.00156 * 179.97438 * 9 8 6 31 31 H 1.08998 * 109.54078 * 57.02473 * 16 14 5 32 32 H 1.08998 * 109.54118 * 296.84251 * 16 14 5 33 33 H 1.08994 * 109.52416 * 62.88138 * 17 16 14 34 34 H 1.08997 * 109.52034 * 183.01074 * 17 16 14 35 35 H 1.08996 * 109.47830 * 177.58831 * 18 17 16 36 36 H 1.09000 * 109.48399 * 297.61779 * 18 17 16 37 37 H 1.08995 * 109.48075 * 181.14231 * 20 19 18 38 38 H 1.09001 * 109.47624 * 301.16772 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0013 6 6 4.3937 3.4319 -1.1789 7 1 4.2314 4.4920 -1.3054 8 6 4.9427 2.6857 -2.2127 9 7 5.5474 1.5459 -1.9526 10 14 4.8233 3.2991 -3.9730 11 1 5.4978 4.6173 -4.0847 12 1 5.4821 2.3268 -4.8818 13 1 3.3944 3.4405 -4.3521 14 6 4.1876 3.5544 1.2644 15 1 3.8742 2.9151 2.0898 16 6 5.6472 3.9729 1.4666 17 6 5.7581 4.8012 2.7503 18 6 4.8183 6.0059 2.6538 19 8 3.4817 5.5494 2.4362 20 6 3.3077 4.8090 1.2264 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8901 24 1 1.8933 -0.5137 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 1.6766 1.9562 0.8901 27 1 1.6766 1.9564 -0.8899 28 1 3.9336 0.9287 -0.8892 29 1 3.9329 0.9288 0.8908 30 1 5.9307 1.0243 -2.6750 31 1 5.9760 4.5712 0.6170 32 1 6.2729 3.0843 1.5509 33 1 5.4765 4.1871 3.6056 34 1 6.7843 5.1476 2.8727 35 1 4.8612 6.5756 3.5821 36 1 5.1255 6.6410 1.8229 37 1 2.2625 4.5166 1.1263 38 1 3.5949 5.4284 0.3767 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254386595.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:44 Heat of formation + Delta-G solvation = -51.000398 kcal Electronic energy + Delta-G solvation = -16861.397758 eV Core-core repulsion = 14317.617008 eV Total energy + Delta-G solvation = -2543.780750 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.74024 -36.07058 -33.93858 -32.47318 -31.28033 -29.32049 -27.29377 -24.40319 -24.26979 -22.70259 -20.96509 -20.03813 -19.43634 -16.54935 -15.65450 -15.20643 -14.93846 -14.52137 -14.11110 -13.96665 -13.58985 -13.15573 -13.02131 -12.27906 -12.04960 -11.91626 -11.68253 -11.32248 -11.05998 -10.83580 -10.73096 -10.52080 -10.46465 -10.31079 -10.15383 -10.02578 -9.81655 -9.56399 -9.37770 -8.88385 -8.40390 -6.58404 -5.78531 -3.31380 3.36288 3.42668 3.45047 4.35740 4.53356 5.23356 5.33339 5.42893 5.50777 5.53933 5.61771 5.73808 5.74106 5.87498 5.95114 6.05783 6.16461 6.27825 6.30127 6.32820 6.40699 6.50763 6.54898 6.59389 6.65614 6.76943 6.90900 6.94016 7.06813 7.23419 7.31087 7.72180 7.77939 7.85381 8.50802 9.19742 9.83649 10.39698 11.22123 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.016244 B = 0.011513 C = 0.007810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.246936 B = 2431.356514 C = 3584.110193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.135 4.135 4 C 0.146 3.854 5 N -0.578 5.578 6 C -0.255 4.255 7 H 0.061 0.939 8 C 0.010 3.990 9 N -0.887 5.887 10 Si 0.894 3.106 11 H -0.282 1.282 12 H -0.291 1.291 13 H -0.283 1.283 14 C 0.146 3.854 15 H 0.054 0.946 16 C -0.124 4.124 17 C -0.154 4.154 18 C 0.064 3.936 19 O -0.396 6.396 20 C 0.051 3.949 21 H 0.050 0.950 22 H 0.044 0.956 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.040 0.960 27 H 0.056 0.944 28 H 0.101 0.899 29 H 0.018 0.982 30 H 0.254 0.746 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.044 0.956 37 H 0.083 0.917 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.613 1.954 6.051 7.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.175 4.175 4 C 0.020 3.980 5 N -0.298 5.298 6 C -0.384 4.384 7 H 0.078 0.922 8 C -0.189 4.189 9 N -0.530 5.530 10 Si 0.724 3.276 11 H -0.209 1.209 12 H -0.217 1.217 13 H -0.209 1.209 14 C 0.038 3.962 15 H 0.072 0.928 16 C -0.164 4.164 17 C -0.193 4.193 18 C -0.013 4.013 19 O -0.314 6.314 20 C -0.027 4.027 21 H 0.069 0.931 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.118 0.882 29 H 0.036 0.964 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.660 1.868 6.064 7.325 hybrid contribution 0.253 0.191 -1.177 1.219 sum -3.407 2.059 4.886 6.303 Atomic orbital electron populations 1.21771 0.97037 1.00433 1.01331 1.21468 0.94607 0.98582 1.01287 1.22224 1.00460 0.94270 1.00580 1.21025 0.89102 0.86093 1.01785 1.43857 1.73715 1.11432 1.00823 1.18925 1.35371 0.93906 0.90218 0.92166 1.25045 0.96999 0.97905 0.99001 1.69994 1.36154 1.15695 1.31138 0.86507 0.77937 0.78044 0.85155 1.20852 1.21669 1.20941 1.20950 0.92759 0.92656 0.89813 0.92782 1.21979 0.99269 0.99501 0.95605 1.22253 0.99158 0.98028 0.99817 1.22451 0.83261 0.95288 1.00284 1.87822 1.27648 1.72796 1.43129 1.23203 1.00526 0.93595 0.85362 0.93102 0.93691 0.93287 0.92368 0.92902 0.94127 0.92542 0.88186 0.96397 0.93572 0.91398 0.92197 0.92004 0.92015 0.90104 0.93731 0.89855 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.15 0.37 -1.74 16 2 C -0.12 -2.03 5.93 -26.73 -0.16 -2.19 16 3 C -0.14 -2.68 5.54 -26.73 -0.15 -2.83 16 4 C 0.15 3.38 5.18 -4.04 -0.02 3.36 16 5 N -0.58 -13.91 2.40 -165.39 -0.40 -14.31 16 6 C -0.25 -6.68 8.20 -15.06 -0.12 -6.80 16 7 H 0.06 1.59 6.78 -52.49 -0.36 1.23 16 8 C 0.01 0.28 4.91 -17.43 -0.09 0.19 16 9 N -0.89 -24.92 11.34 55.49 0.63 -24.29 16 10 Si 0.89 21.28 29.61 -169.99 -5.03 16.25 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.15 3.09 2.84 -67.69 -0.19 2.90 16 15 H 0.05 1.13 7.87 -51.93 -0.41 0.72 16 16 C -0.12 -2.50 5.32 -26.54 -0.14 -2.64 16 17 C -0.15 -2.48 6.14 -26.59 -0.16 -2.64 16 18 C 0.06 1.01 6.84 37.21 0.25 1.26 16 19 O -0.40 -7.33 10.77 -35.23 -0.38 -7.71 16 20 C 0.05 1.01 6.14 37.30 0.23 1.24 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.10 2.62 5.33 -51.93 -0.28 2.34 16 29 H 0.02 0.40 8.04 -51.93 -0.42 -0.01 16 30 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.07 1.49 7.57 -51.93 -0.39 1.10 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 38 H 0.05 1.06 6.88 -51.93 -0.36 0.70 16 LS Contribution 299.03 15.07 4.51 4.51 Total: -1.00 -27.47 299.03 -7.70 -35.16 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -6.84 Total: 0.29 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -0.18 Total: -9.90 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.23 Total: -38.60 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: -0.38 Total: -7.71 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.47 -7.70 -35.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254386595.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.836 kcal (2) G-P(sol) polarization free energy of solvation -27.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds