Wall clock time and date at job start Sun Mar 29 2020 21:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47194 * 2 1 4 4 C 1.53003 * 109.47349 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47091 * 180.02562 * 4 3 2 6 6 C 1.36938 * 119.99936 * 264.52080 * 5 4 3 7 7 H 1.07994 * 120.00344 * 146.49691 * 6 5 4 8 8 C 1.38811 * 119.99830 * 326.48505 * 6 5 4 9 9 N 1.31618 * 120.00259 * 337.38901 * 8 6 5 10 10 Si 1.86800 * 119.99964 * 157.38902 * 8 6 5 11 11 H 1.48498 * 109.47172 * 60.00072 * 10 8 6 12 12 H 1.48501 * 109.47135 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47003 * 300.00028 * 10 8 6 14 14 C 1.46497 * 120.00222 * 84.51550 * 5 4 3 15 15 H 1.09005 * 109.57375 * 359.84402 * 14 5 4 16 16 C 1.53183 * 109.52150 * 119.99787 * 14 5 4 17 17 C 1.53178 * 109.10755 * 176.93403 * 16 14 5 18 18 C 1.53097 * 109.16395 * 302.97424 * 17 16 14 19 19 O 1.42904 * 109.41241 * 57.61187 * 18 17 16 20 20 C 1.42906 * 114.09944 * 298.84174 * 19 18 17 21 21 H 1.08996 * 109.47343 * 59.99843 * 1 2 3 22 22 H 1.09003 * 109.47303 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47191 * 299.99183 * 1 2 3 24 24 H 1.09002 * 109.47191 * 240.00816 * 2 1 3 25 25 H 1.08997 * 109.47528 * 120.00675 * 2 1 3 26 26 H 1.09002 * 109.46385 * 60.00322 * 3 2 1 27 27 H 1.08997 * 109.47434 * 300.00733 * 3 2 1 28 28 H 1.09001 * 109.46621 * 60.00576 * 4 3 2 29 29 H 1.08995 * 109.46784 * 300.00408 * 4 3 2 30 30 H 0.97003 * 120.00156 * 179.97438 * 9 8 6 31 31 H 1.08998 * 109.54078 * 57.02473 * 16 14 5 32 32 H 1.08998 * 109.54118 * 296.84251 * 16 14 5 33 33 H 1.08994 * 109.52416 * 62.88138 * 17 16 14 34 34 H 1.08997 * 109.52034 * 183.01074 * 17 16 14 35 35 H 1.08996 * 109.47830 * 177.58831 * 18 17 16 36 36 H 1.09000 * 109.48399 * 297.61779 * 18 17 16 37 37 H 1.08995 * 109.48075 * 181.14231 * 20 19 18 38 38 H 1.09001 * 109.47624 * 301.16772 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8238 0.0013 6 6 4.3937 3.4319 -1.1789 7 1 4.2314 4.4920 -1.3054 8 6 4.9427 2.6857 -2.2127 9 7 5.5474 1.5459 -1.9526 10 14 4.8233 3.2991 -3.9730 11 1 5.4978 4.6173 -4.0847 12 1 5.4821 2.3268 -4.8818 13 1 3.3944 3.4405 -4.3521 14 6 4.1876 3.5544 1.2644 15 1 3.8742 2.9151 2.0898 16 6 5.6472 3.9729 1.4666 17 6 5.7581 4.8012 2.7503 18 6 4.8183 6.0059 2.6538 19 8 3.4817 5.5494 2.4362 20 6 3.3077 4.8090 1.2264 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8901 24 1 1.8933 -0.5137 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 1.6766 1.9562 0.8901 27 1 1.6766 1.9564 -0.8899 28 1 3.9336 0.9287 -0.8892 29 1 3.9329 0.9288 0.8908 30 1 5.9307 1.0243 -2.6750 31 1 5.9760 4.5712 0.6170 32 1 6.2729 3.0843 1.5509 33 1 5.4765 4.1871 3.6056 34 1 6.7843 5.1476 2.8727 35 1 4.8612 6.5756 3.5821 36 1 5.1255 6.6410 1.8229 37 1 2.2625 4.5166 1.1263 38 1 3.5949 5.4284 0.3767 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254386595.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:44 Heat of formation + Delta-G solvation = -65.819924 kcal Electronic energy + Delta-G solvation = -16862.040381 eV Core-core repulsion = 14317.617008 eV Total energy + Delta-G solvation = -2544.423373 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.28067 -37.78646 -35.45089 -34.16495 -33.01408 -30.87988 -28.99996 -26.24128 -25.78805 -24.19072 -22.52791 -21.65815 -21.09937 -18.38942 -17.34845 -16.74322 -16.55593 -16.13366 -15.77147 -15.61045 -15.22534 -14.66832 -14.44151 -13.86487 -13.64984 -13.42187 -13.19720 -12.93030 -12.86919 -12.68507 -12.43043 -12.06531 -11.97683 -11.82469 -11.80003 -11.68713 -11.34173 -11.28157 -11.10025 -10.54022 -10.29974 -8.55247 -7.80975 -5.37092 1.44998 1.48369 1.53893 2.50086 2.98586 3.25276 3.63826 4.03784 4.10073 4.19279 4.21721 4.24235 4.42439 4.44216 4.45063 4.61335 4.66624 4.80427 4.89128 4.97311 4.99686 5.04247 5.07118 5.11324 5.16959 5.19460 5.33994 5.42066 5.49959 5.55242 5.60615 5.70463 5.90506 6.29241 6.49248 7.18646 7.89059 8.40147 9.16224 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.016244 B = 0.011513 C = 0.007810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.246936 B = 2431.356514 C = 3584.110193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C -0.121 4.121 4 C 0.146 3.854 5 N -0.592 5.592 6 C -0.253 4.253 7 H 0.057 0.943 8 C -0.037 4.037 9 N -0.917 5.917 10 Si 0.950 3.050 11 H -0.277 1.277 12 H -0.294 1.294 13 H -0.281 1.281 14 C 0.142 3.858 15 H 0.056 0.944 16 C -0.119 4.119 17 C -0.144 4.144 18 C 0.058 3.942 19 O -0.400 6.400 20 C 0.066 3.934 21 H 0.048 0.952 22 H 0.065 0.935 23 H 0.057 0.943 24 H 0.047 0.953 25 H 0.061 0.939 26 H 0.048 0.952 27 H 0.038 0.962 28 H 0.070 0.930 29 H 0.015 0.985 30 H 0.250 0.750 31 H 0.043 0.957 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.045 0.955 37 H 0.084 0.916 38 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.442 2.773 7.152 8.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.156 4.156 3 C -0.161 4.161 4 C 0.020 3.980 5 N -0.313 5.313 6 C -0.383 4.383 7 H 0.074 0.926 8 C -0.234 4.234 9 N -0.561 5.561 10 Si 0.779 3.221 11 H -0.203 1.203 12 H -0.221 1.221 13 H -0.207 1.207 14 C 0.035 3.965 15 H 0.074 0.926 16 C -0.159 4.159 17 C -0.182 4.182 18 C -0.018 4.018 19 O -0.318 6.318 20 C -0.012 4.012 21 H 0.067 0.933 22 H 0.084 0.916 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.033 0.967 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.136 0.864 36 H 0.064 0.936 37 H 0.102 0.898 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.500 2.706 7.184 8.898 hybrid contribution 0.549 -0.043 -1.435 1.537 sum -3.950 2.663 5.749 7.466 Atomic orbital electron populations 1.21715 0.94611 1.01992 1.01677 1.21433 0.96701 0.96231 1.01272 1.22012 0.97752 0.96354 0.99947 1.20954 0.91313 0.85571 1.00113 1.44058 1.74062 1.11749 1.01409 1.19080 1.34210 0.93810 0.91191 0.92556 1.25662 0.97358 0.98358 1.02040 1.70122 1.37542 1.16857 1.31610 0.85616 0.77744 0.77499 0.81286 1.20302 1.22058 1.20698 1.21086 0.93793 0.93097 0.88530 0.92564 1.21866 0.97954 0.98891 0.97145 1.22190 1.00940 0.97682 0.97438 1.22726 0.81660 0.95205 1.02194 1.87820 1.29491 1.72464 1.42067 1.22897 1.00059 0.92630 0.85655 0.93325 0.91562 0.92386 0.93374 0.91997 0.93349 0.94354 0.91171 0.96690 0.94102 0.93776 0.94401 0.91061 0.89606 0.86390 0.93622 0.89794 0.94471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.91 71.98 0.71 -3.03 16 2 C -0.12 -3.85 5.93 30.59 0.18 -3.67 16 3 C -0.12 -4.76 5.54 30.60 0.17 -4.59 16 4 C 0.15 6.90 5.18 86.38 0.45 7.35 16 5 N -0.59 -28.93 2.40 -677.19 -1.63 -30.56 16 6 C -0.25 -13.47 8.20 84.03 0.69 -12.78 16 7 H 0.06 3.01 6.78 -2.91 -0.02 2.99 16 8 C -0.04 -2.04 4.91 84.86 0.42 -1.62 16 9 N -0.92 -52.92 11.34 21.65 0.25 -52.68 16 10 Si 0.95 44.36 29.61 68.60 2.03 46.39 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 13 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 14 C 0.14 5.98 2.84 45.15 0.13 6.11 16 15 H 0.06 2.32 7.87 -2.38 -0.02 2.31 16 16 C -0.12 -4.77 5.32 30.71 0.16 -4.61 16 17 C -0.14 -4.29 6.14 30.69 0.19 -4.10 16 18 C 0.06 1.66 6.84 72.01 0.49 2.15 16 19 O -0.40 -13.90 10.77 -148.98 -1.60 -15.51 16 20 C 0.07 2.55 6.14 72.08 0.44 2.99 16 21 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 22 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.07 3.80 5.33 -2.39 -0.01 3.78 16 29 H 0.01 0.69 8.04 -2.39 -0.02 0.67 16 30 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 31 H 0.04 1.95 7.57 -2.39 -0.02 1.93 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 38 H 0.04 1.53 6.88 -2.39 -0.02 1.51 16 Total: -1.00 -59.15 299.03 4.07 -55.08 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.99 Total: 13.08 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: 4.03 Total: -15.81 kcal Atomic # 7 Polarization: -81.85 SS G_CDS: -1.38 Total: -83.23 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -1.60 Total: -15.51 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -59.15 4.07 -55.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254386595.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.743 kcal (2) G-P(sol) polarization free energy of solvation -59.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds