Wall clock time and date at job start Sun Mar 29 2020 21:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47543 * 2 1 4 4 H 1.09002 * 109.46577 * 305.21877 * 3 2 1 5 5 C 1.50696 * 109.47127 * 185.22073 * 3 2 1 6 6 H 1.08008 * 119.99608 * 239.99904 * 5 3 2 7 7 C 1.37875 * 120.00536 * 59.99870 * 5 3 2 8 8 N 1.31514 * 119.99526 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00288 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47042 * 60.00579 * 9 7 5 11 11 H 1.48500 * 109.46894 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47509 * 300.00378 * 9 7 5 13 13 N 1.46899 * 109.46955 * 65.21935 * 3 2 1 14 14 C 1.46902 * 110.99769 * 222.75144 * 13 3 2 15 15 C 1.52994 * 109.54628 * 63.60006 * 14 13 3 16 16 C 1.53180 * 109.54034 * 303.41883 * 14 13 3 17 17 C 1.53102 * 109.15903 * 183.24370 * 16 14 13 18 18 O 1.42902 * 109.48429 * 57.47496 * 17 16 14 19 19 C 1.42899 * 114.10002 * 298.88936 * 18 17 16 20 20 C 1.53093 * 109.41416 * 61.16122 * 19 18 17 21 21 H 1.09001 * 109.46676 * 301.18094 * 1 2 3 22 22 H 1.08996 * 109.47169 * 61.17734 * 1 2 3 23 23 H 1.08991 * 109.47303 * 181.18168 * 1 2 3 24 24 H 1.09003 * 109.46817 * 239.99945 * 2 1 3 25 25 H 1.08998 * 109.47421 * 120.00425 * 2 1 3 26 26 H 0.97004 * 119.99537 * 179.97438 * 8 7 5 27 27 H 1.00903 * 110.99863 * 346.69873 * 13 3 2 28 28 H 1.08992 * 109.47375 * 54.66686 * 15 14 13 29 29 H 1.09000 * 109.47116 * 174.66718 * 15 14 13 30 30 H 1.09006 * 109.47192 * 294.66016 * 15 14 13 31 31 H 1.08998 * 109.52364 * 303.06519 * 16 14 13 32 32 H 1.09003 * 109.52311 * 63.25207 * 16 14 13 33 33 H 1.09001 * 109.40992 * 297.49868 * 17 16 14 34 34 H 1.08999 * 109.49566 * 177.51027 * 17 16 14 35 35 H 1.08999 * 109.48215 * 301.17647 * 19 18 17 36 36 H 1.09009 * 109.49213 * 181.14688 * 19 18 17 37 37 H 1.09000 * 109.52252 * 182.48694 * 20 19 18 38 38 H 1.09000 * 109.57603 * 62.32816 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6024 1.9825 -0.8396 5 6 3.5415 1.4443 -0.1293 6 1 4.1496 1.8879 0.6453 7 6 4.1389 0.8798 -1.2362 8 7 3.3984 0.3401 -2.1796 9 14 6.0000 0.8828 -1.3968 10 1 6.5966 0.1473 -0.2530 11 1 6.3882 0.2209 -2.6682 12 1 6.4946 2.2830 -1.3971 13 7 1.6560 2.0976 1.2575 14 6 1.1707 3.4625 1.0131 15 6 -0.1029 3.4091 0.1670 16 6 2.2455 4.2633 0.2714 17 6 1.7638 5.7056 0.0930 18 8 1.4718 6.2723 1.3719 19 6 0.4400 5.5924 2.0896 20 6 0.8694 4.1462 2.3503 21 1 -0.3633 0.5321 0.8792 22 1 -0.3633 0.4954 -0.9003 23 1 -0.3633 -1.0273 0.0212 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 3.8187 -0.0567 -2.9586 27 1 0.9671 1.5523 1.7536 28 1 -0.8349 2.7638 0.6526 29 1 -0.5143 4.4134 0.0659 30 1 0.1332 3.0121 -0.8204 31 1 3.1686 4.2579 0.8510 32 1 2.4250 3.8143 -0.7055 33 1 0.8639 5.7135 -0.5220 34 1 2.5427 6.2915 -0.3950 35 1 -0.4772 5.5987 1.5007 36 1 0.2652 6.0966 3.0402 37 1 0.0657 3.6136 2.8587 38 1 1.7635 4.1375 2.9736 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255151838.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:55 Heat of formation + Delta-G solvation = -56.237727 kcal Electronic energy + Delta-G solvation = -17317.437915 eV Core-core repulsion = 14773.430058 eV Total energy + Delta-G solvation = -2544.007858 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.57192 -36.59692 -33.68796 -31.67759 -30.75507 -29.32554 -27.37508 -26.23525 -23.42042 -23.12870 -22.30182 -19.57736 -18.08494 -16.26173 -16.03445 -15.62910 -14.74446 -14.54500 -14.40915 -13.91808 -13.46060 -13.07777 -12.97803 -12.58140 -12.00190 -11.70019 -11.53456 -11.44490 -11.11067 -10.90252 -10.80459 -10.73556 -10.66496 -10.17268 -9.89163 -9.82174 -9.63432 -9.45281 -9.14645 -8.98790 -8.29754 -7.16347 -5.93409 -3.96012 3.35939 3.40055 3.44011 4.20151 4.47074 5.01739 5.13983 5.34371 5.38710 5.46578 5.53312 5.66024 5.70859 5.86205 5.98294 6.02223 6.09031 6.14619 6.16413 6.34785 6.35468 6.42595 6.51114 6.57866 6.81556 6.85311 7.06167 7.09282 7.22488 7.50637 7.55403 7.79035 7.96569 8.36210 8.50454 8.76634 9.11900 9.68340 11.11637 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026316 B = 0.009910 C = 0.007977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.747711 B = 2824.854382 C = 3509.331123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.135 4.135 3 C 0.216 3.784 4 H 0.019 0.981 5 C -0.484 4.484 6 H 0.060 0.940 7 C 0.053 3.947 8 N -0.899 5.899 9 Si 0.892 3.108 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.676 5.676 14 C 0.121 3.879 15 C -0.183 4.183 16 C -0.132 4.132 17 C 0.058 3.942 18 O -0.389 6.389 19 C 0.063 3.937 20 C -0.141 4.141 21 H 0.034 0.966 22 H 0.042 0.958 23 H 0.035 0.965 24 H 0.100 0.900 25 H 0.038 0.962 26 H 0.259 0.741 27 H 0.318 0.682 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.044 0.956 34 H 0.088 0.912 35 H 0.046 0.954 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.796 6.343 4.633 10.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 C 0.109 3.891 4 H 0.036 0.964 5 C -0.523 4.523 6 H 0.079 0.921 7 C -0.147 4.147 8 N -0.540 5.540 9 Si 0.720 3.280 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.306 5.306 14 C 0.029 3.971 15 C -0.242 4.242 16 C -0.170 4.170 17 C -0.018 4.018 18 O -0.307 6.307 19 C -0.014 4.014 20 C -0.180 4.180 21 H 0.053 0.947 22 H 0.061 0.939 23 H 0.054 0.946 24 H 0.118 0.882 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.136 0.864 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.106 0.894 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.018 6.593 4.671 10.075 hybrid contribution -0.066 -0.644 -0.696 0.951 sum -6.084 5.949 3.975 9.392 Atomic orbital electron populations 1.21906 0.99659 0.99381 0.99667 1.21934 0.91209 1.01161 1.03044 1.19215 0.95249 0.89310 0.85289 0.96356 1.21231 0.91317 1.35578 1.04154 0.92148 1.24952 0.97849 0.95864 0.96026 1.69859 1.34659 1.39751 1.09684 0.86658 0.86152 0.78134 0.77012 1.20442 1.21613 1.20424 1.60908 1.43257 1.01015 1.25408 1.20751 0.92130 0.91515 0.92735 1.22730 0.98718 1.00763 1.02012 1.22177 0.98877 0.93085 1.02872 1.22729 0.99571 0.95114 0.84430 1.87857 1.56788 1.54659 1.31444 1.22561 0.90091 0.92683 0.96087 1.22208 1.02058 0.95385 0.98305 0.94730 0.93878 0.94605 0.88209 0.94359 0.93160 0.86392 0.93302 0.93295 0.91670 0.90529 0.89303 0.93743 0.89370 0.93568 0.89653 0.91925 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.78 37.16 0.36 -2.46 16 2 C -0.13 -3.10 5.21 -26.73 -0.14 -3.24 16 3 C 0.22 5.12 1.16 -68.87 -0.08 5.05 16 4 H 0.02 0.48 4.99 -51.93 -0.26 0.22 16 5 C -0.48 -12.93 7.75 -34.44 -0.27 -13.20 16 6 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 7 C 0.05 1.44 5.29 -17.82 -0.09 1.34 16 8 N -0.90 -25.11 11.29 55.43 0.63 -24.48 16 9 Si 0.89 21.42 29.54 -169.99 -5.02 16.39 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.68 -13.84 5.93 -94.06 -0.56 -14.39 16 14 C 0.12 2.15 0.69 -131.42 -0.09 2.06 16 15 C -0.18 -3.02 7.73 37.15 0.29 -2.73 16 16 C -0.13 -2.50 4.15 -26.59 -0.11 -2.61 16 17 C 0.06 0.93 6.57 37.21 0.24 1.18 16 18 O -0.39 -6.30 10.77 -35.23 -0.38 -6.68 16 19 C 0.06 0.87 6.57 37.21 0.24 1.12 16 20 C -0.14 -2.16 5.22 -26.59 -0.14 -2.30 16 21 H 0.03 0.59 6.25 -51.93 -0.32 0.27 16 22 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 23 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 25 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.32 6.12 6.59 -39.29 -0.26 5.86 16 28 H 0.05 0.76 7.74 -51.93 -0.40 0.36 16 29 H 0.05 0.72 5.04 -51.93 -0.26 0.45 16 30 H 0.06 1.21 6.44 -51.93 -0.33 0.88 16 31 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 32 H 0.09 1.91 6.40 -51.93 -0.33 1.58 16 33 H 0.04 0.66 6.73 -51.93 -0.35 0.31 16 34 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.05 0.60 6.49 -51.93 -0.34 0.26 16 36 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 282.82 15.07 4.26 4.26 Total: -1.00 -27.50 282.82 -6.94 -34.44 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.09 Total: 6.27 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: 0.22 Total: -15.80 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.07 Total: -38.88 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.38 Total: -6.68 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.50 -6.94 -34.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255151838.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.797 kcal (2) G-P(sol) polarization free energy of solvation -27.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds