Wall clock time and date at job start Sun Mar 29 2020 21:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47543 * 2 1 4 4 H 1.09002 * 109.46577 * 305.21877 * 3 2 1 5 5 C 1.50696 * 109.47127 * 185.22073 * 3 2 1 6 6 H 1.08008 * 119.99608 * 239.99904 * 5 3 2 7 7 C 1.37875 * 120.00536 * 59.99870 * 5 3 2 8 8 N 1.31514 * 119.99526 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00288 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47042 * 60.00579 * 9 7 5 11 11 H 1.48500 * 109.46894 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47509 * 300.00378 * 9 7 5 13 13 N 1.46899 * 109.46955 * 65.21935 * 3 2 1 14 14 C 1.46902 * 110.99769 * 222.75144 * 13 3 2 15 15 C 1.52994 * 109.54628 * 63.60006 * 14 13 3 16 16 C 1.53180 * 109.54034 * 303.41883 * 14 13 3 17 17 C 1.53102 * 109.15903 * 183.24370 * 16 14 13 18 18 O 1.42902 * 109.48429 * 57.47496 * 17 16 14 19 19 C 1.42899 * 114.10002 * 298.88936 * 18 17 16 20 20 C 1.53093 * 109.41416 * 61.16122 * 19 18 17 21 21 H 1.09001 * 109.46676 * 301.18094 * 1 2 3 22 22 H 1.08996 * 109.47169 * 61.17734 * 1 2 3 23 23 H 1.08991 * 109.47303 * 181.18168 * 1 2 3 24 24 H 1.09003 * 109.46817 * 239.99945 * 2 1 3 25 25 H 1.08998 * 109.47421 * 120.00425 * 2 1 3 26 26 H 0.97004 * 119.99537 * 179.97438 * 8 7 5 27 27 H 1.00903 * 110.99863 * 346.69873 * 13 3 2 28 28 H 1.08992 * 109.47375 * 54.66686 * 15 14 13 29 29 H 1.09000 * 109.47116 * 174.66718 * 15 14 13 30 30 H 1.09006 * 109.47192 * 294.66016 * 15 14 13 31 31 H 1.08998 * 109.52364 * 303.06519 * 16 14 13 32 32 H 1.09003 * 109.52311 * 63.25207 * 16 14 13 33 33 H 1.09001 * 109.40992 * 297.49868 * 17 16 14 34 34 H 1.08999 * 109.49566 * 177.51027 * 17 16 14 35 35 H 1.08999 * 109.48215 * 301.17647 * 19 18 17 36 36 H 1.09009 * 109.49213 * 181.14688 * 19 18 17 37 37 H 1.09000 * 109.52252 * 182.48694 * 20 19 18 38 38 H 1.09000 * 109.57603 * 62.32816 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6024 1.9825 -0.8396 5 6 3.5415 1.4443 -0.1293 6 1 4.1496 1.8879 0.6453 7 6 4.1389 0.8798 -1.2362 8 7 3.3984 0.3401 -2.1796 9 14 6.0000 0.8828 -1.3968 10 1 6.5966 0.1473 -0.2530 11 1 6.3882 0.2209 -2.6682 12 1 6.4946 2.2830 -1.3971 13 7 1.6560 2.0976 1.2575 14 6 1.1707 3.4625 1.0131 15 6 -0.1029 3.4091 0.1670 16 6 2.2455 4.2633 0.2714 17 6 1.7638 5.7056 0.0930 18 8 1.4718 6.2723 1.3719 19 6 0.4400 5.5924 2.0896 20 6 0.8694 4.1462 2.3503 21 1 -0.3633 0.5321 0.8792 22 1 -0.3633 0.4954 -0.9003 23 1 -0.3633 -1.0273 0.0212 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 3.8187 -0.0567 -2.9586 27 1 0.9671 1.5523 1.7536 28 1 -0.8349 2.7638 0.6526 29 1 -0.5143 4.4134 0.0659 30 1 0.1332 3.0121 -0.8204 31 1 3.1686 4.2579 0.8510 32 1 2.4250 3.8143 -0.7055 33 1 0.8639 5.7135 -0.5220 34 1 2.5427 6.2915 -0.3950 35 1 -0.4772 5.5987 1.5007 36 1 0.2652 6.0966 3.0402 37 1 0.0657 3.6136 2.8587 38 1 1.7635 4.1375 2.9736 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255151838.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:54 Heat of formation + Delta-G solvation = -74.321526 kcal Electronic energy + Delta-G solvation = -17318.222087 eV Core-core repulsion = 14773.430058 eV Total energy + Delta-G solvation = -2544.792030 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.94100 -38.15335 -35.37299 -33.59733 -32.03875 -30.91779 -28.86603 -27.99832 -25.05257 -24.48897 -23.83244 -21.35566 -19.52008 -18.28361 -17.44077 -16.90872 -16.61006 -15.98407 -15.73776 -15.53969 -15.07379 -14.64976 -14.44658 -14.27022 -13.46600 -13.19949 -13.04044 -12.85982 -12.83896 -12.75501 -12.55791 -12.19698 -12.09020 -12.00951 -11.64327 -11.43864 -11.27504 -10.97939 -10.93594 -10.37124 -10.35950 -8.86904 -8.01392 -6.10606 1.41348 1.41705 1.49317 2.45737 3.02067 3.23049 3.57634 3.82359 4.07907 4.19076 4.27802 4.34753 4.43170 4.50340 4.56629 4.66396 4.69191 4.73098 4.80554 4.89670 4.94280 5.04415 5.06307 5.16055 5.25463 5.26681 5.37121 5.51734 5.54466 5.70085 5.83746 5.94577 6.31753 6.43228 6.70707 7.02572 7.06362 7.57352 9.00457 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026316 B = 0.009910 C = 0.007977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.747711 B = 2824.854382 C = 3509.331123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.132 4.132 3 C 0.228 3.772 4 H -0.004 1.004 5 C -0.495 4.495 6 H 0.043 0.957 7 C 0.010 3.990 8 N -0.920 5.920 9 Si 0.944 3.056 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.683 5.683 14 C 0.115 3.885 15 C -0.173 4.173 16 C -0.127 4.127 17 C 0.066 3.934 18 O -0.400 6.400 19 C 0.060 3.940 20 C -0.135 4.135 21 H 0.056 0.944 22 H 0.037 0.963 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.031 0.969 26 H 0.257 0.743 27 H 0.327 0.673 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.037 0.963 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.113 0.887 37 H 0.085 0.915 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.206 7.257 5.695 12.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.171 4.171 3 C 0.120 3.880 4 H 0.014 0.986 5 C -0.534 4.534 6 H 0.061 0.939 7 C -0.188 4.188 8 N -0.561 5.561 9 Si 0.771 3.229 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.314 5.314 14 C 0.023 3.977 15 C -0.232 4.232 16 C -0.165 4.165 17 C -0.011 4.011 18 O -0.319 6.319 19 C -0.016 4.016 20 C -0.173 4.173 21 H 0.074 0.926 22 H 0.056 0.944 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.146 0.854 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.115 0.885 35 H 0.082 0.918 36 H 0.131 0.869 37 H 0.104 0.896 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.437 7.516 5.749 12.035 hybrid contribution 0.377 -0.914 -0.984 1.395 sum -7.060 6.602 4.765 10.776 Atomic orbital electron populations 1.21750 0.96272 1.00902 1.00388 1.21774 0.94260 1.00042 1.00997 1.18904 0.93410 0.89764 0.85956 0.98597 1.21465 0.93168 1.35106 1.03656 0.93892 1.25569 1.01408 0.95849 0.95948 1.69979 1.35845 1.40366 1.09935 0.85824 0.82000 0.78055 0.76976 1.20268 1.21139 1.20215 1.60772 1.44408 1.02313 1.23903 1.20893 0.92299 0.89881 0.94615 1.22598 0.98090 1.02301 1.00201 1.22058 0.98461 0.95520 1.00501 1.22639 1.00487 0.92928 0.84998 1.87856 1.57771 1.54850 1.31401 1.22788 0.89877 0.91506 0.97458 1.22160 1.02218 0.96605 0.96287 0.92557 0.94409 0.92774 0.91538 0.95023 0.93342 0.85387 0.91856 0.91005 0.94364 0.93407 0.92845 0.92182 0.88538 0.91808 0.86891 0.89632 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.95 9.78 71.98 0.70 -4.25 16 2 C -0.13 -6.11 5.21 30.59 0.16 -5.95 16 3 C 0.23 11.00 1.16 44.17 0.05 11.05 16 4 H 0.00 -0.18 4.99 -2.39 -0.01 -0.20 16 5 C -0.49 -27.26 7.75 25.60 0.20 -27.07 16 6 H 0.04 2.46 7.81 -2.91 -0.02 2.44 16 7 C 0.01 0.54 5.29 84.65 0.45 0.99 16 8 N -0.92 -52.71 11.29 21.45 0.24 -52.47 16 9 Si 0.94 44.77 29.54 68.60 2.03 46.80 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 13 N -0.68 -27.79 5.93 -451.51 -2.68 -30.47 16 14 C 0.11 3.96 0.69 3.65 0.00 3.96 16 15 C -0.17 -5.35 7.73 71.98 0.56 -4.80 16 16 C -0.13 -4.87 4.15 30.69 0.13 -4.75 16 17 C 0.07 2.03 6.57 72.02 0.47 2.51 16 18 O -0.40 -11.99 10.77 -148.98 -1.60 -13.59 16 19 C 0.06 1.45 6.57 72.01 0.47 1.92 16 20 C -0.13 -3.77 5.22 30.69 0.16 -3.61 16 21 H 0.06 1.79 6.25 -2.39 -0.01 1.78 16 22 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.07 3.55 5.95 -2.39 -0.01 3.54 16 25 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 27 H 0.33 12.08 6.59 -89.69 -0.59 11.49 16 28 H 0.06 1.76 7.74 -2.39 -0.02 1.75 16 29 H 0.07 1.87 5.04 -2.39 -0.01 1.86 16 30 H 0.04 1.39 6.44 -2.38 -0.02 1.38 16 31 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.05 2.40 6.40 -2.39 -0.02 2.39 16 33 H 0.06 1.66 6.73 -2.39 -0.02 1.64 16 34 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.06 1.35 6.49 -2.39 -0.02 1.33 16 36 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 37 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -60.36 282.82 1.79 -58.57 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: 0.45 Total: 21.15 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 3.35 Total: -29.99 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -2.44 Total: -82.94 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -1.60 Total: -13.59 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -60.36 1.79 -58.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255151838.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.751 kcal (2) G-P(sol) polarization free energy of solvation -60.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds