Wall clock time and date at job start Sun Mar 29 2020 21:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.46965 * 2 1 4 4 H 1.08999 * 109.47452 * 305.90482 * 3 2 1 5 5 C 1.50702 * 109.47155 * 185.89997 * 3 2 1 6 6 H 1.07996 * 120.00166 * 243.25687 * 5 3 2 7 7 C 1.37874 * 119.99658 * 63.25503 * 5 3 2 8 8 N 1.31521 * 120.00301 * 195.95249 * 7 5 3 9 9 Si 1.86807 * 120.00357 * 15.95179 * 7 5 3 10 10 H 1.48500 * 109.47035 * 93.38852 * 9 7 5 11 11 H 1.48495 * 109.47280 * 213.39112 * 9 7 5 12 12 H 1.48503 * 109.46756 * 333.38917 * 9 7 5 13 13 N 1.46901 * 109.47426 * 65.90166 * 3 2 1 14 14 C 1.46899 * 110.99981 * 258.86796 * 13 3 2 15 15 C 1.53005 * 109.46685 * 175.58276 * 14 13 3 16 16 H 1.08994 * 113.03766 * 48.02323 * 15 14 13 17 17 C 1.54044 * 113.86044 * 179.97438 * 15 14 13 18 18 C 1.54038 * 85.81769 * 136.85173 * 17 15 14 19 19 C 1.53000 * 113.86098 * 91.56979 * 18 17 15 20 20 C 1.52998 * 113.86675 * 223.26835 * 18 17 15 21 21 O 1.44172 * 85.52404 * 337.42045 * 18 17 15 22 22 H 1.08994 * 109.46927 * 295.91824 * 1 2 3 23 23 H 1.09000 * 109.47052 * 55.92391 * 1 2 3 24 24 H 1.09004 * 109.47003 * 175.92278 * 1 2 3 25 25 H 1.08993 * 109.46873 * 240.00042 * 2 1 3 26 26 H 1.08999 * 109.46860 * 120.00103 * 2 1 3 27 27 H 0.96996 * 120.00549 * 180.02562 * 8 7 5 28 28 H 1.00900 * 110.99726 * 22.81891 * 13 3 2 29 29 H 1.09001 * 109.47328 * 55.58334 * 14 13 3 30 30 H 1.08997 * 109.46871 * 295.58074 * 14 13 3 31 31 H 1.08997 * 113.81578 * 251.07553 * 17 15 14 32 32 H 1.08998 * 113.81754 * 22.63120 * 17 15 14 33 33 H 1.09001 * 109.47651 * 59.99909 * 19 18 17 34 34 H 1.09006 * 109.47483 * 179.97438 * 19 18 17 35 35 H 1.09000 * 109.47201 * 299.99580 * 19 18 17 36 36 H 1.09000 * 109.46708 * 60.00202 * 20 18 17 37 37 H 1.08998 * 109.47788 * 180.02562 * 20 18 17 38 38 H 1.09001 * 109.47620 * 300.00888 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5930 1.9859 -0.8324 5 6 3.5399 1.4450 -0.1460 6 1 4.1590 1.8379 0.6468 7 6 4.1218 0.9457 -1.2919 8 7 5.4042 0.6544 -1.3051 9 14 3.0886 0.6828 -2.8259 10 1 3.1728 1.8864 -3.6917 11 1 3.5972 -0.4980 -3.5689 12 1 1.6744 0.4511 -2.4365 13 7 1.6701 2.0927 1.2643 14 6 0.4966 2.9585 1.0873 15 6 0.0757 3.5301 2.4427 16 1 0.9100 3.9445 3.0085 17 6 -1.1520 4.4580 2.3735 18 6 -1.6368 3.7243 3.6382 19 6 -1.1996 4.3888 4.9452 20 6 -3.1242 3.3665 3.6144 21 8 -0.7722 2.6527 3.2110 22 1 -0.3633 0.4492 0.9243 23 1 -0.3633 0.5758 -0.8512 24 1 -0.3633 -1.0251 -0.0731 25 1 1.8933 -0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 5.8137 0.3035 -2.1114 28 1 1.5092 1.4092 1.9888 29 1 -0.3241 2.3768 0.6676 30 1 0.7466 3.7753 0.4103 31 1 -0.9184 5.5099 2.5373 32 1 -1.7813 4.2909 1.4994 33 1 -1.5969 5.4029 4.9879 34 1 -1.5797 3.8142 5.7899 35 1 -0.1110 4.4229 4.9890 36 1 -3.3274 2.7144 2.7650 37 1 -3.3893 2.8530 4.5386 38 1 -3.7157 4.2775 3.5228 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154404.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:24 Heat of formation + Delta-G solvation = -22.529635 kcal Electronic energy + Delta-G solvation = -16447.531681 eV Core-core repulsion = 13904.985516 eV Total energy + Delta-G solvation = -2542.546165 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.63653 -36.67609 -32.86584 -32.08269 -31.31928 -29.25249 -27.69140 -27.38283 -24.69594 -22.38747 -21.10057 -19.85300 -19.14773 -16.74419 -16.38406 -15.81029 -15.21339 -14.89059 -14.21165 -13.95126 -13.74504 -13.09221 -12.79405 -12.72018 -12.47282 -12.15499 -11.93609 -11.80978 -11.69195 -11.63158 -11.35466 -11.07517 -10.78299 -10.54981 -10.32782 -10.16469 -9.88081 -9.50861 -9.33448 -9.25422 -8.33251 -7.28471 -6.01817 -3.92805 3.30712 3.40291 3.42516 3.64298 4.29827 4.47667 4.74803 4.76547 4.98584 5.24552 5.25939 5.37119 5.39783 5.48430 5.57147 5.62953 5.65381 5.82337 5.85543 5.88246 5.93785 6.01529 6.09464 6.14902 6.28079 6.39486 6.57441 6.59766 6.67859 6.83241 6.93742 7.25347 7.82163 7.99461 8.41128 8.77816 9.15923 9.65428 11.11759 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.045404 B = 0.006158 C = 0.005869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.539413 B = 4545.913793 C = 4769.930305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.149 4.149 3 C 0.193 3.807 4 H 0.022 0.978 5 C -0.499 4.499 6 H 0.080 0.920 7 C 0.071 3.929 8 N -0.895 5.895 9 Si 0.858 3.142 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.255 1.255 13 N -0.671 5.671 14 C 0.059 3.941 15 C 0.068 3.932 16 H 0.097 0.903 17 C -0.176 4.176 18 C 0.079 3.921 19 C -0.152 4.152 20 C -0.141 4.141 21 O -0.371 6.371 22 H 0.050 0.950 23 H 0.043 0.957 24 H 0.040 0.960 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.262 0.738 28 H 0.332 0.668 29 H 0.034 0.966 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.993 6.384 7.768 18.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.188 4.188 3 C 0.084 3.916 4 H 0.040 0.960 5 C -0.537 4.537 6 H 0.098 0.902 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.685 3.315 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.179 1.179 13 N -0.301 5.301 14 C -0.071 4.071 15 C 0.010 3.990 16 H 0.115 0.885 17 C -0.214 4.214 18 C 0.039 3.961 19 C -0.209 4.209 20 C -0.198 4.198 21 O -0.291 6.291 22 H 0.069 0.931 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.149 0.851 29 H 0.052 0.948 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.379 6.546 7.619 18.369 hybrid contribution -1.108 -0.723 -1.128 1.738 sum -16.486 5.823 6.491 18.651 Atomic orbital electron populations 1.21967 0.98460 1.00140 1.00723 1.22593 0.92830 1.01535 1.01846 1.19566 0.96682 0.88276 0.87081 0.96016 1.21002 0.89221 1.39786 1.03711 0.90200 1.24902 0.94725 0.94801 0.98605 1.69982 1.11550 1.43646 1.28184 0.87286 0.82154 0.77747 0.84263 1.20836 1.21464 1.17904 1.60684 1.33673 1.25958 1.09801 1.22188 0.93157 0.97954 0.93842 1.23583 0.93065 0.88839 0.93468 0.88496 1.24855 0.97739 1.00299 0.98469 1.22649 0.91984 0.87426 0.94043 1.21943 1.02459 1.00354 0.96149 1.21776 0.93149 1.01990 1.02871 1.89793 1.42729 1.28190 1.68415 0.93057 0.93824 0.94092 0.92231 0.92393 0.92856 0.85098 0.94845 0.90312 0.91056 0.89022 0.91353 0.91782 0.91514 0.91591 0.92049 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 8.74 37.16 0.32 -2.56 16 2 C -0.15 -3.28 4.49 -26.73 -0.12 -3.40 16 3 C 0.19 4.59 1.73 -68.87 -0.12 4.47 16 4 H 0.02 0.53 6.36 -51.93 -0.33 0.20 16 5 C -0.50 -14.26 9.29 -34.44 -0.32 -14.58 16 6 H 0.08 2.53 8.06 -52.49 -0.42 2.10 16 7 C 0.07 2.06 5.32 -17.82 -0.09 1.97 16 8 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 9 Si 0.86 21.36 25.75 -169.99 -4.38 16.99 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.25 -5.96 5.48 56.52 0.31 -5.65 16 13 N -0.67 -14.10 6.10 -107.95 -0.66 -14.75 16 14 C 0.06 1.02 5.14 -3.82 -0.02 1.00 16 15 C 0.07 1.01 4.27 -26.27 -0.11 0.89 16 16 H 0.10 1.45 7.84 -51.93 -0.41 1.04 16 17 C -0.18 -2.04 7.11 -25.64 -0.18 -2.22 16 18 C 0.08 0.91 1.82 -90.17 -0.16 0.75 16 19 C -0.15 -1.48 9.38 37.16 0.35 -1.13 16 20 C -0.14 -1.37 9.48 37.16 0.35 -1.01 16 21 O -0.37 -5.76 11.97 -35.23 -0.42 -6.18 16 22 H 0.05 0.91 6.50 -51.93 -0.34 0.57 16 23 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 1.39 4.86 -51.93 -0.25 1.14 16 26 H 0.06 1.27 8.01 -51.93 -0.42 0.86 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.33 6.83 7.97 -39.29 -0.31 6.51 16 29 H 0.03 0.58 5.97 -51.93 -0.31 0.27 16 30 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.09 1.03 8.05 -51.93 -0.42 0.61 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.70 7.58 -51.93 -0.39 0.31 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 296.99 15.07 4.48 4.48 Total: -1.00 -30.76 296.99 -6.95 -37.71 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -6.63 Total: 4.48 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -0.11 Total: -15.83 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.11 Total: -41.64 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.42 Total: -6.18 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.38 Total: 16.99 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.76 -6.95 -37.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154404.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.179 kcal (2) G-P(sol) polarization free energy of solvation -30.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds