Wall clock time and date at job start Sun Mar 29 2020 21:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.46965 * 2 1 4 4 H 1.08999 * 109.47452 * 305.90482 * 3 2 1 5 5 C 1.50702 * 109.47155 * 185.89997 * 3 2 1 6 6 H 1.07996 * 120.00166 * 243.25687 * 5 3 2 7 7 C 1.37874 * 119.99658 * 63.25503 * 5 3 2 8 8 N 1.31521 * 120.00301 * 195.95249 * 7 5 3 9 9 Si 1.86807 * 120.00357 * 15.95179 * 7 5 3 10 10 H 1.48500 * 109.47035 * 93.38852 * 9 7 5 11 11 H 1.48495 * 109.47280 * 213.39112 * 9 7 5 12 12 H 1.48503 * 109.46756 * 333.38917 * 9 7 5 13 13 N 1.46901 * 109.47426 * 65.90166 * 3 2 1 14 14 C 1.46899 * 110.99981 * 258.86796 * 13 3 2 15 15 C 1.53005 * 109.46685 * 175.58276 * 14 13 3 16 16 H 1.08994 * 113.03766 * 48.02323 * 15 14 13 17 17 C 1.54044 * 113.86044 * 179.97438 * 15 14 13 18 18 C 1.54038 * 85.81769 * 136.85173 * 17 15 14 19 19 C 1.53000 * 113.86098 * 91.56979 * 18 17 15 20 20 C 1.52998 * 113.86675 * 223.26835 * 18 17 15 21 21 O 1.44172 * 85.52404 * 337.42045 * 18 17 15 22 22 H 1.08994 * 109.46927 * 295.91824 * 1 2 3 23 23 H 1.09000 * 109.47052 * 55.92391 * 1 2 3 24 24 H 1.09004 * 109.47003 * 175.92278 * 1 2 3 25 25 H 1.08993 * 109.46873 * 240.00042 * 2 1 3 26 26 H 1.08999 * 109.46860 * 120.00103 * 2 1 3 27 27 H 0.96996 * 120.00549 * 180.02562 * 8 7 5 28 28 H 1.00900 * 110.99726 * 22.81891 * 13 3 2 29 29 H 1.09001 * 109.47328 * 55.58334 * 14 13 3 30 30 H 1.08997 * 109.46871 * 295.58074 * 14 13 3 31 31 H 1.08997 * 113.81578 * 251.07553 * 17 15 14 32 32 H 1.08998 * 113.81754 * 22.63120 * 17 15 14 33 33 H 1.09001 * 109.47651 * 59.99909 * 19 18 17 34 34 H 1.09006 * 109.47483 * 179.97438 * 19 18 17 35 35 H 1.09000 * 109.47201 * 299.99580 * 19 18 17 36 36 H 1.09000 * 109.46708 * 60.00202 * 20 18 17 37 37 H 1.08998 * 109.47788 * 180.02562 * 20 18 17 38 38 H 1.09001 * 109.47620 * 300.00888 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5930 1.9859 -0.8324 5 6 3.5399 1.4450 -0.1460 6 1 4.1590 1.8379 0.6468 7 6 4.1218 0.9457 -1.2919 8 7 5.4042 0.6544 -1.3051 9 14 3.0886 0.6828 -2.8259 10 1 3.1728 1.8864 -3.6917 11 1 3.5972 -0.4980 -3.5689 12 1 1.6744 0.4511 -2.4365 13 7 1.6701 2.0927 1.2643 14 6 0.4966 2.9585 1.0873 15 6 0.0757 3.5301 2.4427 16 1 0.9100 3.9445 3.0085 17 6 -1.1520 4.4580 2.3735 18 6 -1.6368 3.7243 3.6382 19 6 -1.1996 4.3888 4.9452 20 6 -3.1242 3.3665 3.6144 21 8 -0.7722 2.6527 3.2110 22 1 -0.3633 0.4492 0.9243 23 1 -0.3633 0.5758 -0.8512 24 1 -0.3633 -1.0251 -0.0731 25 1 1.8933 -0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 5.8137 0.3035 -2.1114 28 1 1.5092 1.4092 1.9888 29 1 -0.3241 2.3768 0.6676 30 1 0.7466 3.7753 0.4103 31 1 -0.9184 5.5099 2.5373 32 1 -1.7813 4.2909 1.4994 33 1 -1.5969 5.4029 4.9879 34 1 -1.5797 3.8142 5.7899 35 1 -0.1110 4.4229 4.9890 36 1 -3.3274 2.7144 2.7650 37 1 -3.3893 2.8530 4.5386 38 1 -3.7157 4.2775 3.5228 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154404.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:23 Heat of formation + Delta-G solvation = -44.656921 kcal Electronic energy + Delta-G solvation = -16448.491193 eV Core-core repulsion = 13904.985516 eV Total energy + Delta-G solvation = -2543.505676 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.66559 -38.40292 -34.63159 -33.52785 -32.72177 -30.59476 -29.10318 -28.39025 -26.17501 -24.11692 -22.39559 -21.62904 -20.10394 -18.83919 -17.53010 -16.94219 -16.73230 -16.39365 -15.72501 -15.57583 -14.87467 -14.61131 -14.41395 -13.81825 -13.57765 -13.43055 -13.31094 -13.13150 -12.91770 -12.70615 -12.66899 -12.59626 -12.39301 -12.35403 -11.74656 -11.58073 -11.36980 -11.22785 -11.12630 -10.56593 -10.48758 -8.97571 -8.26809 -6.23197 1.33758 1.37274 1.46867 2.36891 2.66837 3.05410 3.27926 3.57773 3.94155 4.01189 4.11542 4.24766 4.25465 4.35456 4.43410 4.48384 4.52522 4.72394 4.74894 4.75881 4.81264 4.89726 4.97633 5.05012 5.05509 5.10677 5.14425 5.21894 5.39166 5.46313 5.49190 5.59207 5.73809 6.06600 6.70629 6.76687 6.81845 7.39685 8.90838 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.045404 B = 0.006158 C = 0.005869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.539413 B = 4545.913793 C = 4769.930305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.147 4.147 3 C 0.199 3.801 4 H 0.024 0.976 5 C -0.509 4.509 6 H 0.030 0.970 7 C 0.014 3.986 8 N -0.946 5.946 9 Si 0.928 3.072 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.228 1.228 13 N -0.685 5.685 14 C 0.061 3.939 15 C 0.064 3.936 16 H 0.090 0.910 17 C -0.162 4.162 18 C 0.073 3.927 19 C -0.151 4.151 20 C -0.139 4.139 21 O -0.400 6.400 22 H 0.056 0.944 23 H 0.050 0.950 24 H 0.062 0.938 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.264 0.736 28 H 0.332 0.668 29 H 0.039 0.961 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.163 6.977 7.428 21.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.187 4.187 3 C 0.089 3.911 4 H 0.042 0.958 5 C -0.547 4.547 6 H 0.048 0.952 7 C -0.183 4.183 8 N -0.586 5.586 9 Si 0.752 3.248 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.151 1.151 13 N -0.315 5.315 14 C -0.068 4.068 15 C 0.006 3.994 16 H 0.107 0.893 17 C -0.200 4.200 18 C 0.034 3.966 19 C -0.208 4.208 20 C -0.196 4.196 21 O -0.321 6.321 22 H 0.075 0.925 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.150 0.850 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.581 7.155 7.302 21.207 hybrid contribution -0.057 -0.871 -0.890 1.247 sum -18.638 6.283 6.411 20.687 Atomic orbital electron populations 1.21842 0.95155 1.01827 1.01318 1.22458 0.95689 0.99606 1.00903 1.19353 0.93439 0.89876 0.88406 0.95822 1.21288 0.91766 1.39145 1.02513 0.95158 1.25772 0.95929 0.94528 1.02082 1.70132 1.13859 1.45358 1.29289 0.86164 0.81627 0.77678 0.79344 1.20330 1.21271 1.15051 1.60520 1.36263 1.26067 1.08614 1.22224 0.91709 0.97163 0.95736 1.23454 0.94133 0.89838 0.91995 0.89272 1.24769 0.95599 1.00756 0.98851 1.22989 0.92648 0.86273 0.94707 1.21967 1.01747 1.01683 0.95411 1.21801 0.91969 1.03077 1.02735 1.89768 1.43533 1.30014 1.68773 0.92518 0.93139 0.91888 0.93437 0.93218 0.92704 0.85038 0.94281 0.90376 0.89089 0.88329 0.88940 0.91289 0.92797 0.92528 0.91571 0.88820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 8.74 71.98 0.63 -4.27 16 2 C -0.15 -6.31 4.49 30.60 0.14 -6.17 16 3 C 0.20 9.41 1.73 44.17 0.08 9.49 16 4 H 0.02 1.12 6.36 -2.39 -0.02 1.11 16 5 C -0.51 -29.98 9.29 25.60 0.24 -29.74 16 6 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16 7 C 0.01 0.83 5.32 84.65 0.45 1.28 16 8 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 9 Si 0.93 44.07 25.75 68.60 1.77 45.83 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 11 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 12 H -0.23 -9.73 5.48 99.48 0.55 -9.19 16 13 N -0.68 -28.83 6.10 -495.45 -3.02 -31.85 16 14 C 0.06 2.05 5.14 86.31 0.44 2.50 16 15 C 0.06 1.80 4.27 30.89 0.13 1.94 16 16 H 0.09 2.64 7.84 -2.39 -0.02 2.62 16 17 C -0.16 -3.33 7.11 31.30 0.22 -3.11 16 18 C 0.07 1.51 1.82 -10.50 -0.02 1.50 16 19 C -0.15 -2.59 9.38 71.98 0.67 -1.92 16 20 C -0.14 -2.28 9.48 71.98 0.68 -1.60 16 21 O -0.40 -11.87 11.97 -148.98 -1.78 -13.65 16 22 H 0.06 1.87 6.50 -2.39 -0.02 1.85 16 23 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 25 H 0.05 2.13 4.86 -2.39 -0.01 2.12 16 26 H 0.05 2.17 8.01 -2.39 -0.02 2.15 16 27 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 28 H 0.33 13.78 7.97 -89.69 -0.71 13.06 16 29 H 0.04 1.28 5.97 -2.39 -0.01 1.26 16 30 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.09 1.52 8.10 -2.39 -0.02 1.50 16 32 H 0.10 1.90 8.05 -2.39 -0.02 1.89 16 33 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.05 1.06 7.58 -2.39 -0.02 1.04 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -68.11 296.99 1.07 -67.04 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.14 Total: 22.77 kcal Atomic # 6 Polarization: -33.79 SS G_CDS: 3.67 Total: -30.12 kcal Atomic # 7 Polarization: -89.15 SS G_CDS: -2.72 Total: -91.88 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: -1.78 Total: -13.65 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.77 Total: 45.83 kcal Total: -68.11 1.07 -67.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154404.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.386 kcal (2) G-P(sol) polarization free energy of solvation -68.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds