Wall clock time and date at job start Sun Mar 29 2020 21:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47150 * 2 1 4 4 H 1.09003 * 109.46973 * 305.65090 * 3 2 1 5 5 C 1.50700 * 109.47022 * 185.65799 * 3 2 1 6 6 H 1.08001 * 120.00233 * 239.99542 * 5 3 2 7 7 C 1.37885 * 120.00344 * 59.99969 * 5 3 2 8 8 N 1.31516 * 119.99582 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00102 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47063 * 60.00268 * 9 7 5 11 11 H 1.48496 * 109.47090 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47111 * 300.00037 * 9 7 5 13 13 N 1.46897 * 109.47335 * 65.65862 * 3 2 1 14 14 C 1.46896 * 111.00102 * 205.56950 * 13 3 2 15 15 C 1.52997 * 109.47249 * 183.98519 * 14 13 3 16 16 H 1.08996 * 112.68153 * 314.66478 * 15 14 13 17 17 C 1.53367 * 113.43330 * 184.11331 * 15 14 13 18 18 C 1.53369 * 81.26111 * 218.60924 * 17 15 14 19 19 C 1.52996 * 113.39405 * 271.59032 * 18 17 15 20 20 C 1.53000 * 113.43362 * 141.38941 * 18 17 15 21 21 O 1.43352 * 88.44668 * 26.48714 * 18 17 15 22 22 H 1.08998 * 109.47567 * 175.57644 * 1 2 3 23 23 H 1.09000 * 109.47179 * 295.57994 * 1 2 3 24 24 H 1.09002 * 109.47338 * 55.57519 * 1 2 3 25 25 H 1.09000 * 109.47306 * 240.00104 * 2 1 3 26 26 H 1.09000 * 109.47355 * 119.99662 * 2 1 3 27 27 H 0.96995 * 119.99930 * 180.02562 * 8 7 5 28 28 H 1.00901 * 110.99503 * 329.51953 * 13 3 2 29 29 H 1.09002 * 109.47287 * 63.98439 * 14 13 3 30 30 H 1.09009 * 109.46956 * 303.98554 * 14 13 3 31 31 H 1.08995 * 114.57142 * 331.70258 * 17 15 14 32 32 H 1.09001 * 114.56695 * 105.51900 * 17 15 14 33 33 H 1.08996 * 109.47599 * 178.41760 * 19 18 17 34 34 H 1.09003 * 109.47000 * 298.41651 * 19 18 17 35 35 H 1.09003 * 109.47227 * 58.41532 * 19 18 17 36 36 H 1.08996 * 109.47521 * 301.56529 * 20 18 17 37 37 H 1.09006 * 109.46958 * 61.56490 * 20 18 17 38 38 H 1.09001 * 109.46868 * 181.55783 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5963 1.9847 -0.8351 5 6 3.5404 1.4448 -0.1401 6 1 4.1541 1.8864 0.6311 7 6 4.1299 0.8831 -1.2529 8 7 3.3826 0.3449 -2.1918 9 14 5.9898 0.8866 -1.4268 10 1 6.5947 0.1482 -0.2891 11 1 6.3689 0.2269 -2.7020 12 1 6.4842 2.2868 -1.4271 13 7 1.6650 2.0945 1.2618 14 6 1.5712 3.5508 1.0943 15 6 1.2774 4.2020 2.4473 16 1 0.4946 3.6844 3.0017 17 6 1.0615 5.7179 2.3606 18 6 1.8446 5.6691 3.6784 19 6 0.9537 5.4801 4.9078 20 6 2.8362 6.8229 3.8400 21 8 2.4547 4.4535 3.2255 22 1 -0.3634 -1.0246 -0.0793 23 1 -0.3633 0.4437 0.9269 24 1 -0.3634 0.5810 -0.8477 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.7972 -0.0506 -2.9744 28 1 0.8020 1.7156 1.6220 29 1 0.7677 3.7853 0.3961 30 1 2.5146 3.9332 0.7043 31 1 1.5871 6.2043 1.5389 32 1 0.0233 6.0343 2.4619 33 1 1.5748 5.4264 5.8019 34 1 0.2675 6.3229 4.9922 35 1 0.3838 4.5566 4.8051 36 1 3.5451 6.8115 3.0122 37 1 2.2952 7.7693 3.8421 38 1 3.3746 6.7101 4.7811 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154407.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:29 Heat of formation + Delta-G solvation = -24.040308 kcal Electronic energy + Delta-G solvation = -16359.221539 eV Core-core repulsion = 13816.609866 eV Total energy + Delta-G solvation = -2542.611673 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.89005 -36.23525 -32.80755 -31.96509 -31.19350 -29.10181 -27.56168 -26.72560 -24.63880 -22.53481 -20.76828 -19.52178 -19.14611 -16.38535 -16.06652 -15.69434 -15.16739 -14.69772 -13.96830 -13.91540 -13.44324 -12.94522 -12.67946 -12.52337 -12.31942 -12.05392 -11.87688 -11.79128 -11.47841 -11.19851 -11.06597 -10.81361 -10.61064 -10.46173 -10.28256 -9.89740 -9.63570 -9.50056 -9.29970 -9.01805 -8.28304 -7.15003 -5.90669 -3.94002 3.39597 3.42540 3.47654 4.03695 4.35039 4.51419 4.85200 4.94067 5.12811 5.33324 5.38271 5.49934 5.52919 5.66722 5.71518 5.75394 5.81640 5.92225 5.99930 6.11012 6.18213 6.19688 6.27721 6.42870 6.45691 6.58363 6.82859 6.87476 7.11602 7.23842 7.53157 7.82983 7.99241 8.35589 8.45527 8.82580 9.14885 9.70675 11.14802 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026433 B = 0.007063 C = 0.005890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.013648 B = 3963.154161 C = 4752.590282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.219 3.781 4 H 0.001 0.999 5 C -0.491 4.491 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.683 5.683 14 C 0.067 3.933 15 C 0.069 3.931 16 H 0.081 0.919 17 C -0.178 4.178 18 C 0.069 3.931 19 C -0.154 4.154 20 C -0.143 4.143 21 O -0.342 6.342 22 H 0.037 0.963 23 H 0.034 0.966 24 H 0.042 0.958 25 H 0.100 0.900 26 H 0.041 0.959 27 H 0.259 0.741 28 H 0.314 0.686 29 H 0.028 0.972 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.735 9.727 9.038 14.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.112 3.888 4 H 0.018 0.982 5 C -0.530 4.530 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.314 5.314 14 C -0.063 4.063 15 C 0.011 3.989 16 H 0.099 0.901 17 C -0.216 4.216 18 C 0.029 3.971 19 C -0.211 4.211 20 C -0.200 4.200 21 O -0.261 6.261 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.118 0.882 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.131 0.869 29 H 0.046 0.954 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.796 9.503 9.132 14.398 hybrid contribution 0.021 0.049 -0.691 0.693 sum -5.774 9.552 8.441 13.994 Atomic orbital electron populations 1.21879 0.99648 0.99669 0.99500 1.21770 0.91187 1.00388 1.03115 1.19152 0.95546 0.89981 0.84158 0.98181 1.21220 0.91339 1.36244 1.04158 0.92001 1.24960 0.98089 0.95704 0.95857 1.69865 1.34712 1.39723 1.09629 0.86600 0.85847 0.78143 0.77037 1.20303 1.21502 1.20442 1.60667 1.36076 1.01732 1.32941 1.21981 1.01122 0.90673 0.92495 1.23230 0.88015 0.94043 0.93629 0.90108 1.24556 1.01213 0.97676 0.98195 1.22428 0.93056 0.87655 0.93925 1.22003 0.99433 1.02402 0.97289 1.21815 0.98973 0.96374 1.02818 1.90099 1.33462 1.38195 1.64305 0.94382 0.94656 0.93922 0.88213 0.94015 0.93113 0.86880 0.95416 0.89864 0.88385 0.90788 0.91759 0.91528 0.91732 0.91474 0.91523 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.67 37.16 0.36 -2.57 16 2 C -0.13 -3.04 5.36 -26.73 -0.14 -3.19 16 3 C 0.22 5.61 2.02 -68.87 -0.14 5.47 16 4 H 0.00 0.02 7.84 -51.93 -0.41 -0.39 16 5 C -0.49 -14.07 8.58 -34.44 -0.30 -14.37 16 6 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 7 C 0.05 1.53 5.29 -17.82 -0.09 1.44 16 8 N -0.90 -26.08 11.29 55.43 0.63 -25.46 16 9 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 N -0.68 -15.16 6.27 -107.95 -0.68 -15.84 16 14 C 0.07 1.32 5.50 -3.83 -0.02 1.30 16 15 C 0.07 1.12 3.95 -39.29 -0.16 0.96 16 16 H 0.08 1.21 7.11 -51.93 -0.37 0.84 16 17 C -0.18 -2.29 7.31 -26.35 -0.19 -2.48 16 18 C 0.07 0.92 1.69 -103.18 -0.17 0.75 16 19 C -0.15 -1.67 9.27 37.16 0.34 -1.32 16 20 C -0.14 -1.63 9.43 37.16 0.35 -1.28 16 21 O -0.34 -6.23 12.21 -35.23 -0.43 -6.66 16 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.03 0.62 6.61 -51.93 -0.34 0.27 16 24 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.10 2.69 5.94 -51.93 -0.31 2.38 16 26 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.31 6.27 6.62 -39.29 -0.26 6.01 16 29 H 0.03 0.51 8.13 -51.93 -0.42 0.09 16 30 H 0.08 1.85 7.96 -51.92 -0.41 1.43 16 31 H 0.10 1.26 8.12 -51.93 -0.42 0.84 16 32 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.72 6.87 -51.93 -0.36 0.37 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 303.25 15.07 4.57 4.57 Total: -1.00 -30.37 303.25 -7.74 -38.11 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.65 Total: 3.39 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -0.16 Total: -15.29 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: -0.05 Total: -41.30 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.43 Total: -6.66 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.37 -7.74 -38.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154407.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.068 kcal (2) G-P(sol) polarization free energy of solvation -30.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds