Wall clock time and date at job start Sun Mar 29 2020 21:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47150 * 2 1 4 4 H 1.09003 * 109.46973 * 305.65090 * 3 2 1 5 5 C 1.50700 * 109.47022 * 185.65799 * 3 2 1 6 6 H 1.08001 * 120.00233 * 239.99542 * 5 3 2 7 7 C 1.37885 * 120.00344 * 59.99969 * 5 3 2 8 8 N 1.31516 * 119.99582 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00102 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47063 * 60.00268 * 9 7 5 11 11 H 1.48496 * 109.47090 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47111 * 300.00037 * 9 7 5 13 13 N 1.46897 * 109.47335 * 65.65862 * 3 2 1 14 14 C 1.46896 * 111.00102 * 205.56950 * 13 3 2 15 15 C 1.52997 * 109.47249 * 183.98519 * 14 13 3 16 16 H 1.08996 * 112.68153 * 314.66478 * 15 14 13 17 17 C 1.53367 * 113.43330 * 184.11331 * 15 14 13 18 18 C 1.53369 * 81.26111 * 218.60924 * 17 15 14 19 19 C 1.52996 * 113.39405 * 271.59032 * 18 17 15 20 20 C 1.53000 * 113.43362 * 141.38941 * 18 17 15 21 21 O 1.43352 * 88.44668 * 26.48714 * 18 17 15 22 22 H 1.08998 * 109.47567 * 175.57644 * 1 2 3 23 23 H 1.09000 * 109.47179 * 295.57994 * 1 2 3 24 24 H 1.09002 * 109.47338 * 55.57519 * 1 2 3 25 25 H 1.09000 * 109.47306 * 240.00104 * 2 1 3 26 26 H 1.09000 * 109.47355 * 119.99662 * 2 1 3 27 27 H 0.96995 * 119.99930 * 180.02562 * 8 7 5 28 28 H 1.00901 * 110.99503 * 329.51953 * 13 3 2 29 29 H 1.09002 * 109.47287 * 63.98439 * 14 13 3 30 30 H 1.09009 * 109.46956 * 303.98554 * 14 13 3 31 31 H 1.08995 * 114.57142 * 331.70258 * 17 15 14 32 32 H 1.09001 * 114.56695 * 105.51900 * 17 15 14 33 33 H 1.08996 * 109.47599 * 178.41760 * 19 18 17 34 34 H 1.09003 * 109.47000 * 298.41651 * 19 18 17 35 35 H 1.09003 * 109.47227 * 58.41532 * 19 18 17 36 36 H 1.08996 * 109.47521 * 301.56529 * 20 18 17 37 37 H 1.09006 * 109.46958 * 61.56490 * 20 18 17 38 38 H 1.09001 * 109.46868 * 181.55783 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5963 1.9847 -0.8351 5 6 3.5404 1.4448 -0.1401 6 1 4.1541 1.8864 0.6311 7 6 4.1299 0.8831 -1.2529 8 7 3.3826 0.3449 -2.1918 9 14 5.9898 0.8866 -1.4268 10 1 6.5947 0.1482 -0.2891 11 1 6.3689 0.2269 -2.7020 12 1 6.4842 2.2868 -1.4271 13 7 1.6650 2.0945 1.2618 14 6 1.5712 3.5508 1.0943 15 6 1.2774 4.2020 2.4473 16 1 0.4946 3.6844 3.0017 17 6 1.0615 5.7179 2.3606 18 6 1.8446 5.6691 3.6784 19 6 0.9537 5.4801 4.9078 20 6 2.8362 6.8229 3.8400 21 8 2.4547 4.4535 3.2255 22 1 -0.3634 -1.0246 -0.0793 23 1 -0.3633 0.4437 0.9269 24 1 -0.3634 0.5810 -0.8477 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.7972 -0.0506 -2.9744 28 1 0.8020 1.7156 1.6220 29 1 0.7677 3.7853 0.3961 30 1 2.5146 3.9332 0.7043 31 1 1.5871 6.2043 1.5389 32 1 0.0233 6.0343 2.4619 33 1 1.5748 5.4264 5.8019 34 1 0.2675 6.3229 4.9922 35 1 0.3838 4.5566 4.8051 36 1 3.5451 6.8115 3.0122 37 1 2.2952 7.7693 3.8421 38 1 3.3746 6.7101 4.7811 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154407.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:29 Heat of formation + Delta-G solvation = -44.645713 kcal Electronic energy + Delta-G solvation = -16360.115056 eV Core-core repulsion = 13816.609866 eV Total energy + Delta-G solvation = -2543.505190 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.05241 -38.11123 -34.64115 -33.38819 -32.79709 -30.47955 -28.61382 -28.38813 -26.27029 -24.36362 -22.18776 -21.37476 -20.24024 -18.41324 -17.48558 -16.97111 -16.70706 -16.41674 -15.66897 -15.40265 -14.70707 -14.53225 -14.14756 -13.97917 -13.64377 -13.24477 -13.15554 -13.08217 -12.79801 -12.76233 -12.66299 -12.57139 -12.40193 -12.05622 -11.92179 -11.54885 -11.38594 -11.11644 -10.97691 -10.55610 -10.44412 -9.00166 -8.08831 -6.20657 1.38407 1.40270 1.48554 2.42175 2.95173 3.15012 3.23521 3.64582 3.92258 4.04257 4.17239 4.28385 4.39262 4.50652 4.53247 4.56878 4.69352 4.72097 4.75027 4.82548 4.91423 4.95336 5.02253 5.08361 5.14428 5.23509 5.35230 5.35971 5.50147 5.56444 5.60709 5.72878 5.88306 6.34354 6.49228 6.92247 7.00762 7.48099 8.94006 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026433 B = 0.007063 C = 0.005890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.013648 B = 3963.154161 C = 4752.590282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.122 4.122 3 C 0.225 3.775 4 H -0.029 1.029 5 C -0.515 4.515 6 H 0.041 0.959 7 C 0.011 3.989 8 N -0.918 5.918 9 Si 0.954 3.046 10 H -0.275 1.275 11 H -0.278 1.278 12 H -0.277 1.277 13 N -0.689 5.689 14 C 0.069 3.931 15 C 0.067 3.933 16 H 0.098 0.902 17 C -0.163 4.163 18 C 0.062 3.938 19 C -0.150 4.150 20 C -0.142 4.142 21 O -0.389 6.389 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.038 0.962 25 H 0.068 0.932 26 H 0.034 0.966 27 H 0.262 0.738 28 H 0.329 0.671 29 H 0.039 0.961 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.048 0.952 37 H 0.095 0.905 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.859 10.677 10.151 16.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C 0.117 3.883 4 H -0.012 1.012 5 C -0.554 4.554 6 H 0.059 0.941 7 C -0.187 4.187 8 N -0.558 5.558 9 Si 0.780 3.220 10 H -0.201 1.201 11 H -0.203 1.203 12 H -0.202 1.202 13 N -0.321 5.321 14 C -0.060 4.060 15 C 0.009 3.991 16 H 0.116 0.884 17 C -0.201 4.201 18 C 0.023 3.977 19 C -0.207 4.207 20 C -0.199 4.199 21 O -0.309 6.309 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.057 0.943 25 H 0.087 0.913 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.148 0.852 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.111 0.889 32 H 0.125 0.875 33 H 0.084 0.916 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.114 0.886 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.935 10.463 10.258 16.211 hybrid contribution 0.376 -0.221 -1.020 1.110 sum -6.559 10.242 9.237 15.273 Atomic orbital electron populations 1.21741 0.95899 1.01298 1.00605 1.21594 0.94555 0.98723 1.01156 1.18929 0.93882 0.90888 0.84619 1.01189 1.21436 0.93090 1.36765 1.04111 0.94097 1.25653 1.02297 0.95244 0.95494 1.69978 1.36223 1.39772 1.09822 0.85682 0.80828 0.78176 0.77345 1.20068 1.20282 1.20212 1.60535 1.37202 1.03270 1.31130 1.21965 0.99630 0.89188 0.95251 1.23282 0.87982 0.96235 0.91579 0.88440 1.24473 1.03090 0.94599 0.97901 1.22787 0.93551 0.86332 0.95027 1.22009 0.99371 1.03441 0.95911 1.21848 0.98728 0.97134 1.02224 1.90070 1.34986 1.40726 1.65100 0.92259 0.92249 0.94294 0.91308 0.94714 0.92928 0.85246 0.94263 0.93529 0.88919 0.87497 0.91622 0.88601 0.92185 0.93280 0.88586 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.21 9.67 71.98 0.70 -4.52 16 2 C -0.12 -5.93 5.36 30.59 0.16 -5.76 16 3 C 0.22 11.84 2.02 44.17 0.09 11.93 16 4 H -0.03 -1.69 7.84 -2.39 -0.02 -1.71 16 5 C -0.52 -30.53 8.58 25.60 0.22 -30.31 16 6 H 0.04 2.53 7.81 -2.91 -0.02 2.51 16 7 C 0.01 0.66 5.29 84.66 0.45 1.10 16 8 N -0.92 -54.21 11.29 21.45 0.24 -53.96 16 9 Si 0.95 46.22 29.54 68.60 2.03 48.25 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 13 N -0.69 -30.93 6.27 -495.45 -3.11 -34.04 16 14 C 0.07 2.76 5.50 86.30 0.47 3.24 16 15 C 0.07 2.11 3.95 22.46 0.09 2.20 16 16 H 0.10 2.72 7.11 -2.39 -0.02 2.71 16 17 C -0.16 -3.83 7.31 30.84 0.23 -3.61 16 18 C 0.06 1.53 1.69 -18.93 -0.03 1.50 16 19 C -0.15 -2.81 9.27 71.98 0.67 -2.14 16 20 C -0.14 -3.00 9.43 71.98 0.68 -2.32 16 21 O -0.39 -14.14 12.21 -148.98 -1.82 -15.95 16 22 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.06 1.94 6.61 -2.39 -0.02 1.93 16 24 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.07 3.79 5.94 -2.39 -0.01 3.78 16 26 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 28 H 0.33 12.85 6.62 -89.69 -0.59 12.25 16 29 H 0.04 1.45 8.13 -2.39 -0.02 1.43 16 30 H 0.05 2.17 7.96 -2.38 -0.02 2.15 16 31 H 0.09 2.27 8.12 -2.39 -0.02 2.25 16 32 H 0.11 1.82 8.11 -2.39 -0.02 1.80 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.10 1.23 8.14 -2.39 -0.02 1.22 16 35 H 0.06 1.18 6.87 -2.39 -0.02 1.16 16 36 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -67.51 303.25 1.48 -66.03 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.42 Total: 18.38 kcal Atomic # 6 Polarization: -32.42 SS G_CDS: 3.72 Total: -28.70 kcal Atomic # 7 Polarization: -85.14 SS G_CDS: -2.87 Total: -88.00 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -1.82 Total: -15.95 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -67.51 1.48 -66.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154407.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.388 kcal (2) G-P(sol) polarization free energy of solvation -67.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds