Wall clock time and date at job start Sun Mar 29 2020 21:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47417 * 2 1 4 4 H 1.08995 * 109.47193 * 305.33676 * 3 2 1 5 5 C 1.50699 * 109.47086 * 185.33789 * 3 2 1 6 6 H 1.08002 * 120.00061 * 240.00081 * 5 3 2 7 7 C 1.37876 * 120.00261 * 59.72389 * 5 3 2 8 8 N 1.31515 * 119.99478 * 0.27705 * 7 5 3 9 9 Si 1.86798 * 120.00264 * 180.27178 * 7 5 3 10 10 H 1.48493 * 109.47165 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46719 * 120.00484 * 9 7 5 12 12 H 1.48495 * 109.47338 * 239.99930 * 9 7 5 13 13 N 1.46904 * 109.46851 * 65.33929 * 3 2 1 14 14 C 1.46903 * 110.99799 * 205.60508 * 13 3 2 15 15 H 1.09002 * 109.47154 * 327.98786 * 14 13 3 16 16 C 1.52998 * 109.47302 * 87.98858 * 14 13 3 17 17 C 1.53000 * 109.47177 * 180.02562 * 16 14 13 18 18 C 1.53005 * 109.46729 * 299.99517 * 17 16 14 19 19 H 1.09000 * 109.46465 * 180.02562 * 18 17 16 20 20 O 1.42895 * 109.47483 * 300.00089 * 18 17 16 21 21 C 1.53006 * 109.46914 * 60.00536 * 18 17 16 22 22 C 1.52995 * 109.46865 * 299.99634 * 21 18 17 23 23 H 1.08998 * 109.47312 * 59.31023 * 1 2 3 24 24 H 1.08998 * 109.47627 * 179.31388 * 1 2 3 25 25 H 1.09000 * 109.46984 * 299.31670 * 1 2 3 26 26 H 1.09002 * 109.47096 * 239.99605 * 2 1 3 27 27 H 1.09009 * 109.46702 * 120.00234 * 2 1 3 28 28 H 0.96997 * 119.99962 * 179.97438 * 8 7 5 29 29 H 1.00891 * 111.00373 * 329.55616 * 13 3 2 30 30 H 1.09007 * 109.47064 * 299.99991 * 16 14 13 31 31 H 1.09002 * 109.47075 * 59.99879 * 16 14 13 32 32 H 1.09001 * 109.46824 * 180.02562 * 17 16 14 33 33 H 1.08995 * 109.47334 * 59.99428 * 17 16 14 34 34 H 0.96700 * 114.00534 * 300.00322 * 20 18 17 35 35 H 1.08998 * 109.46552 * 179.97438 * 21 18 17 36 36 H 1.09002 * 109.47250 * 59.99727 * 21 18 17 37 37 H 1.09002 * 109.47262 * 300.00085 * 22 21 18 38 38 H 1.08997 * 109.47153 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6008 1.9831 -0.8383 5 6 3.5412 1.4444 -0.1322 6 1 4.1508 1.8874 0.6415 7 6 4.1367 0.8756 -1.2380 8 7 3.3943 0.3361 -2.1801 9 14 5.9978 0.8713 -1.3982 10 1 6.5981 1.5347 -0.2131 11 1 6.4842 -0.5294 -1.4803 12 1 6.3904 1.6045 -2.6284 13 7 1.6584 2.0967 1.2587 14 6 1.5647 3.5527 1.0879 15 1 2.2885 3.8782 0.3406 16 6 0.1537 3.9224 0.6261 17 6 0.0564 5.4388 0.4475 18 6 0.3541 6.1293 1.7800 19 1 0.2843 7.2096 1.6529 20 8 -0.5947 5.7032 2.7599 21 6 1.7652 5.7597 2.2418 22 6 1.8626 4.2433 2.4203 23 1 -0.3634 0.5245 -0.8837 24 1 -0.3634 -1.0275 -0.0123 25 1 -0.3633 0.5032 0.8961 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5139 0.8901 28 1 3.8131 -0.0637 -2.9582 29 1 0.7939 1.7182 1.6154 30 1 -0.0583 3.4307 -0.3234 31 1 -0.5701 3.5969 1.3733 32 1 -0.9491 5.7021 0.1190 33 1 0.7801 5.7638 -0.2998 34 1 -1.5126 5.9053 2.5327 35 1 1.9774 6.2520 3.1908 36 1 2.4890 6.0848 1.4943 37 1 1.1388 3.9182 3.1677 38 1 2.8677 3.9800 2.7497 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154485.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:19 Heat of formation + Delta-G solvation = -75.606758 kcal Electronic energy + Delta-G solvation = -16820.784085 eV Core-core repulsion = 14275.936323 eV Total energy + Delta-G solvation = -2544.847762 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.02565 -36.38769 -34.31179 -32.00448 -30.78434 -30.43702 -27.73522 -25.77833 -22.82013 -22.32309 -21.14070 -19.71630 -19.17237 -16.67941 -16.14826 -15.71177 -14.83315 -14.57931 -14.09372 -13.67662 -13.22453 -13.02524 -12.70655 -12.44603 -12.00735 -11.85463 -11.67652 -11.45256 -11.20932 -10.93488 -10.82375 -10.67174 -10.55831 -10.02353 -9.97409 -9.89731 -9.64593 -9.60342 -9.29178 -8.96492 -8.30881 -7.08262 -5.92301 -3.95881 3.33408 3.41390 3.47073 4.37004 4.48657 4.95911 4.99859 5.11586 5.34678 5.42956 5.55920 5.66244 5.77290 5.84973 5.97252 6.12958 6.20258 6.21269 6.22701 6.31775 6.38694 6.45007 6.55182 6.62236 6.87912 6.89637 6.97960 7.15755 7.25854 7.59778 7.73996 7.84296 7.99069 8.42193 8.47965 8.86949 9.13346 9.69076 11.12934 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029038 B = 0.007911 C = 0.006837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.032068 B = 3538.708684 C = 4094.366163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.219 3.781 4 H 0.001 0.999 5 C -0.489 4.489 6 H 0.061 0.939 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.683 5.683 14 C 0.097 3.903 15 H 0.076 0.924 16 C -0.141 4.141 17 C -0.147 4.147 18 C 0.107 3.893 19 H 0.046 0.954 20 O -0.562 6.562 21 C -0.112 4.112 22 C -0.100 4.100 23 H 0.041 0.959 24 H 0.036 0.964 25 H 0.035 0.965 26 H 0.098 0.902 27 H 0.040 0.960 28 H 0.258 0.742 29 H 0.317 0.683 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.370 0.630 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.252 8.982 5.146 12.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C 0.111 3.889 4 H 0.019 0.981 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.312 5.312 14 C -0.014 4.014 15 H 0.095 0.905 16 C -0.180 4.180 17 C -0.185 4.185 18 C 0.048 3.952 19 H 0.064 0.936 20 O -0.367 6.367 21 C -0.150 4.150 22 C -0.138 4.138 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.117 0.883 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.134 0.866 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.216 0.784 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.008 8.674 5.511 11.904 hybrid contribution -0.404 0.222 -1.141 1.230 sum -6.412 8.896 4.370 11.804 Atomic orbital electron populations 1.21875 0.99680 0.99476 0.99616 1.21774 0.91183 1.00584 1.02980 1.19151 0.95231 0.89831 0.84642 0.98112 1.21292 0.91404 1.35808 1.04284 0.92064 1.24964 0.98008 0.95782 0.95926 1.69886 1.34507 1.39655 1.09744 0.86518 0.86007 0.77570 0.77779 1.19790 1.21181 1.21322 1.60753 1.36023 1.01808 1.32641 1.21440 0.94063 0.89773 0.96145 0.90545 1.22193 0.99934 0.94631 1.01216 1.22187 1.01255 0.97423 0.97684 1.21798 0.90086 0.95658 0.87672 0.93581 1.86546 1.18684 1.84509 1.46932 1.21558 0.93888 0.98218 1.01305 1.21406 1.01892 0.92366 0.98175 0.94004 0.94510 0.94566 0.88334 0.94142 0.93247 0.86560 0.92393 0.92056 0.92594 0.91116 0.78419 0.91911 0.90854 0.91963 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.74 37.16 0.36 -2.58 16 2 C -0.13 -3.03 5.36 -26.74 -0.14 -3.18 16 3 C 0.22 5.47 1.84 -68.87 -0.13 5.35 16 4 H 0.00 0.03 7.34 -51.93 -0.38 -0.35 16 5 C -0.49 -13.62 8.55 -34.44 -0.29 -13.91 16 6 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 7 C 0.05 1.48 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -25.73 11.28 55.43 0.63 -25.10 16 9 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 N -0.68 -14.74 6.06 -100.95 -0.61 -15.35 16 14 C 0.10 1.83 2.26 -67.71 -0.15 1.68 16 15 H 0.08 1.65 7.63 -51.93 -0.40 1.25 16 16 C -0.14 -2.30 5.01 -26.73 -0.13 -2.43 16 17 C -0.15 -1.96 5.64 -26.73 -0.15 -2.11 16 18 C 0.11 1.34 3.77 -26.73 -0.10 1.24 16 19 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 20 O -0.56 -7.12 11.97 -35.23 -0.42 -7.55 16 21 C -0.11 -1.56 5.66 -26.73 -0.15 -1.71 16 22 C -0.10 -1.69 5.38 -26.73 -0.14 -1.83 16 23 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.04 0.65 6.47 -51.93 -0.34 0.31 16 26 H 0.10 2.65 5.93 -51.93 -0.31 2.34 16 27 H 0.04 0.97 8.14 -51.92 -0.42 0.55 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.32 6.40 6.19 -39.30 -0.24 6.15 16 30 H 0.06 1.04 7.66 -51.92 -0.40 0.64 16 31 H 0.06 0.98 7.67 -51.93 -0.40 0.58 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.37 3.16 9.08 45.56 0.41 3.58 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 1.08 7.68 -51.93 -0.40 0.68 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 293.72 15.07 4.43 4.43 Total: -1.00 -29.33 293.72 -7.93 -37.26 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -5.80 Total: 7.72 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -1.13 Total: -18.10 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.01 Total: -40.45 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.42 Total: -7.55 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.33 -7.93 -37.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154485.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.344 kcal (2) G-P(sol) polarization free energy of solvation -29.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds