Wall clock time and date at job start Sun Mar 29 2020 21:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47417 * 2 1 4 4 H 1.08995 * 109.47193 * 305.33676 * 3 2 1 5 5 C 1.50699 * 109.47086 * 185.33789 * 3 2 1 6 6 H 1.08002 * 120.00061 * 240.00081 * 5 3 2 7 7 C 1.37876 * 120.00261 * 59.72389 * 5 3 2 8 8 N 1.31515 * 119.99478 * 0.27705 * 7 5 3 9 9 Si 1.86798 * 120.00264 * 180.27178 * 7 5 3 10 10 H 1.48493 * 109.47165 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46719 * 120.00484 * 9 7 5 12 12 H 1.48495 * 109.47338 * 239.99930 * 9 7 5 13 13 N 1.46904 * 109.46851 * 65.33929 * 3 2 1 14 14 C 1.46903 * 110.99799 * 205.60508 * 13 3 2 15 15 H 1.09002 * 109.47154 * 327.98786 * 14 13 3 16 16 C 1.52998 * 109.47302 * 87.98858 * 14 13 3 17 17 C 1.53000 * 109.47177 * 180.02562 * 16 14 13 18 18 C 1.53005 * 109.46729 * 299.99517 * 17 16 14 19 19 H 1.09000 * 109.46465 * 180.02562 * 18 17 16 20 20 O 1.42895 * 109.47483 * 300.00089 * 18 17 16 21 21 C 1.53006 * 109.46914 * 60.00536 * 18 17 16 22 22 C 1.52995 * 109.46865 * 299.99634 * 21 18 17 23 23 H 1.08998 * 109.47312 * 59.31023 * 1 2 3 24 24 H 1.08998 * 109.47627 * 179.31388 * 1 2 3 25 25 H 1.09000 * 109.46984 * 299.31670 * 1 2 3 26 26 H 1.09002 * 109.47096 * 239.99605 * 2 1 3 27 27 H 1.09009 * 109.46702 * 120.00234 * 2 1 3 28 28 H 0.96997 * 119.99962 * 179.97438 * 8 7 5 29 29 H 1.00891 * 111.00373 * 329.55616 * 13 3 2 30 30 H 1.09007 * 109.47064 * 299.99991 * 16 14 13 31 31 H 1.09002 * 109.47075 * 59.99879 * 16 14 13 32 32 H 1.09001 * 109.46824 * 180.02562 * 17 16 14 33 33 H 1.08995 * 109.47334 * 59.99428 * 17 16 14 34 34 H 0.96700 * 114.00534 * 300.00322 * 20 18 17 35 35 H 1.08998 * 109.46552 * 179.97438 * 21 18 17 36 36 H 1.09002 * 109.47250 * 59.99727 * 21 18 17 37 37 H 1.09002 * 109.47262 * 300.00085 * 22 21 18 38 38 H 1.08997 * 109.47153 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6008 1.9831 -0.8383 5 6 3.5412 1.4444 -0.1322 6 1 4.1508 1.8874 0.6415 7 6 4.1367 0.8756 -1.2380 8 7 3.3943 0.3361 -2.1801 9 14 5.9978 0.8713 -1.3982 10 1 6.5981 1.5347 -0.2131 11 1 6.4842 -0.5294 -1.4803 12 1 6.3904 1.6045 -2.6284 13 7 1.6584 2.0967 1.2587 14 6 1.5647 3.5527 1.0879 15 1 2.2885 3.8782 0.3406 16 6 0.1537 3.9224 0.6261 17 6 0.0564 5.4388 0.4475 18 6 0.3541 6.1293 1.7800 19 1 0.2843 7.2096 1.6529 20 8 -0.5947 5.7032 2.7599 21 6 1.7652 5.7597 2.2418 22 6 1.8626 4.2433 2.4203 23 1 -0.3634 0.5245 -0.8837 24 1 -0.3634 -1.0275 -0.0123 25 1 -0.3633 0.5032 0.8961 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5139 0.8901 28 1 3.8131 -0.0637 -2.9582 29 1 0.7939 1.7182 1.6154 30 1 -0.0583 3.4307 -0.3234 31 1 -0.5701 3.5969 1.3733 32 1 -0.9491 5.7021 0.1190 33 1 0.7801 5.7638 -0.2998 34 1 -1.5126 5.9053 2.5327 35 1 1.9774 6.2520 3.1908 36 1 2.4890 6.0848 1.4943 37 1 1.1388 3.9182 3.1677 38 1 2.8677 3.9800 2.7497 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154485.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:19 Heat of formation + Delta-G solvation = -96.370552 kcal Electronic energy + Delta-G solvation = -16821.684471 eV Core-core repulsion = 14275.936323 eV Total energy + Delta-G solvation = -2545.748147 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.27776 -37.95518 -35.76077 -33.95390 -32.35807 -31.65656 -29.36427 -27.61781 -24.68373 -23.56691 -22.47936 -21.53232 -20.55895 -18.29423 -17.69419 -16.99806 -16.76890 -15.81626 -15.80071 -15.22232 -14.76385 -14.49500 -14.30127 -13.92087 -13.47598 -13.24661 -13.10305 -13.04380 -12.81601 -12.71738 -12.50776 -12.23900 -11.98500 -11.93331 -11.59475 -11.54007 -11.25617 -11.08445 -10.85092 -10.56275 -10.43320 -8.88200 -8.06204 -6.18224 1.38620 1.40778 1.52911 2.43641 3.17956 3.41289 3.72275 3.85798 3.90078 4.18033 4.31284 4.40540 4.49429 4.55432 4.57350 4.64466 4.70017 4.71266 4.86376 5.01983 5.07490 5.11656 5.14592 5.23879 5.25931 5.28866 5.38499 5.51526 5.54419 5.65460 5.78401 5.92171 6.39242 6.59224 6.97114 7.01362 7.06708 7.51135 8.96720 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029038 B = 0.007911 C = 0.006837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.032068 B = 3538.708684 C = 4094.366163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.123 4.123 3 C 0.229 3.771 4 H -0.031 1.031 5 C -0.510 4.510 6 H 0.046 0.954 7 C 0.008 3.992 8 N -0.920 5.920 9 Si 0.954 3.046 10 H -0.272 1.272 11 H -0.279 1.279 12 H -0.280 1.280 13 N -0.687 5.687 14 C 0.096 3.904 15 H 0.043 0.957 16 C -0.132 4.132 17 C -0.143 4.143 18 C 0.113 3.887 19 H 0.076 0.924 20 O -0.577 6.577 21 C -0.113 4.113 22 C -0.092 4.092 23 H 0.036 0.964 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.034 0.966 28 H 0.260 0.740 29 H 0.325 0.675 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.389 0.611 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.068 10.161 5.887 14.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.162 4.162 3 C 0.120 3.880 4 H -0.013 1.013 5 C -0.549 4.549 6 H 0.064 0.936 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.781 3.219 10 H -0.197 1.197 11 H -0.205 1.205 12 H -0.206 1.206 13 N -0.318 5.318 14 C -0.015 4.015 15 H 0.061 0.939 16 C -0.171 4.171 17 C -0.182 4.182 18 C 0.055 3.945 19 H 0.094 0.906 20 O -0.385 6.385 21 C -0.151 4.151 22 C -0.130 4.130 23 H 0.055 0.945 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.144 0.856 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.238 0.762 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.850 9.867 6.259 13.544 hybrid contribution -0.166 -0.148 -1.352 1.371 sum -7.016 9.719 4.907 12.952 Atomic orbital electron populations 1.21729 0.96275 1.01114 1.00310 1.21611 0.94260 0.99245 1.01050 1.18880 0.93725 0.90419 0.84940 1.01341 1.21525 0.92992 1.36099 1.04234 0.93573 1.25680 1.02279 0.95391 0.95593 1.70008 1.36103 1.39918 1.10034 0.85559 0.80878 0.77738 0.77773 1.19651 1.20529 1.20625 1.60678 1.36761 1.03471 1.30871 1.21451 0.95105 0.88236 0.96662 0.93905 1.22037 0.97854 0.97167 1.00024 1.22187 1.02768 0.94758 0.98467 1.21723 0.89037 0.97065 0.86714 0.90599 1.86503 1.20152 1.84803 1.46995 1.21581 0.95566 0.95654 1.02276 1.21288 1.00627 0.94617 0.96445 0.94510 0.92357 0.92625 0.91410 0.94760 0.93108 0.85609 0.94606 0.91236 0.89916 0.91683 0.76171 0.90556 0.90651 0.92116 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.30 9.74 71.98 0.70 -4.59 16 2 C -0.12 -5.99 5.36 30.59 0.16 -5.83 16 3 C 0.23 11.81 1.84 44.17 0.08 11.89 16 4 H -0.03 -1.77 7.34 -2.39 -0.02 -1.79 16 5 C -0.51 -29.28 8.55 25.60 0.22 -29.07 16 6 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 7 C 0.01 0.48 5.29 84.65 0.45 0.92 16 8 N -0.92 -53.88 11.28 21.45 0.24 -53.63 16 9 Si 0.95 45.15 29.54 68.60 2.03 47.18 16 10 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 13 N -0.69 -30.23 6.06 -473.31 -2.87 -33.10 16 14 C 0.10 3.69 2.26 44.91 0.10 3.79 16 15 H 0.04 1.92 7.63 -2.39 -0.02 1.90 16 16 C -0.13 -4.22 5.01 30.59 0.15 -4.06 16 17 C -0.14 -3.50 5.64 30.60 0.17 -3.32 16 18 C 0.11 2.49 3.77 30.60 0.12 2.61 16 19 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 20 O -0.58 -12.66 11.97 -148.98 -1.78 -14.44 16 21 C -0.11 -2.95 5.66 30.59 0.17 -2.77 16 22 C -0.09 -3.05 5.38 30.59 0.16 -2.89 16 23 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.05 1.92 6.47 -2.39 -0.02 1.90 16 26 H 0.07 3.74 5.93 -2.39 -0.01 3.72 16 27 H 0.03 1.66 8.14 -2.38 -0.02 1.64 16 28 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 29 H 0.33 13.07 6.19 -89.70 -0.56 12.52 16 30 H 0.04 1.29 7.66 -2.38 -0.02 1.27 16 31 H 0.07 2.11 7.67 -2.39 -0.02 2.09 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.39 5.14 9.08 -74.06 -0.67 4.47 16 35 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.06 2.04 7.68 -2.39 -0.02 2.02 16 38 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -64.24 293.72 -0.09 -64.33 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: -0.20 Total: 22.99 kcal Atomic # 6 Polarization: -35.82 SS G_CDS: 2.49 Total: -33.33 kcal Atomic # 7 Polarization: -84.11 SS G_CDS: -2.63 Total: -86.73 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -1.78 Total: -14.44 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -64.24 -0.09 -64.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154485.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.041 kcal (2) G-P(sol) polarization free energy of solvation -64.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds