Wall clock time and date at job start Sun Mar 29 2020 21:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47413 * 2 1 4 4 H 1.08997 * 109.47312 * 54.90362 * 3 2 1 5 5 C 1.50700 * 109.47368 * 174.90815 * 3 2 1 6 6 H 1.07994 * 120.00084 * 119.99826 * 5 3 2 7 7 C 1.37879 * 119.99564 * 299.99651 * 5 3 2 8 8 N 1.31507 * 120.00076 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 120.00117 * 0.02562 * 7 5 3 10 10 H 1.48493 * 109.47336 * 89.99844 * 9 7 5 11 11 H 1.48500 * 109.47113 * 210.00181 * 9 7 5 12 12 H 1.48506 * 109.47051 * 329.99824 * 9 7 5 13 13 N 1.46905 * 109.47127 * 294.90362 * 3 2 1 14 14 C 1.46903 * 111.00197 * 154.21073 * 13 3 2 15 15 C 1.53000 * 109.46988 * 185.21254 * 14 13 3 16 16 H 1.09000 * 112.85138 * 316.19850 * 15 14 13 17 17 C 1.53784 * 113.61377 * 87.50489 * 15 14 13 18 18 C 1.54050 * 87.07463 * 139.97782 * 17 15 14 19 19 C 1.52992 * 113.61491 * 89.07334 * 18 17 15 20 20 O 1.42907 * 113.69231 * 220.05412 * 18 17 15 21 21 C 1.53780 * 86.98710 * 334.56605 * 18 17 15 22 22 H 1.09000 * 109.47043 * 300.12683 * 1 2 3 23 23 H 1.09006 * 109.47363 * 60.12189 * 1 2 3 24 24 H 1.08992 * 109.47701 * 180.12754 * 1 2 3 25 25 H 1.09000 * 109.47068 * 240.00165 * 2 1 3 26 26 H 1.08996 * 109.47276 * 120.00127 * 2 1 3 27 27 H 0.97008 * 120.00180 * 179.97438 * 8 7 5 28 28 H 1.00896 * 111.00026 * 278.16928 * 13 3 2 29 29 H 1.08999 * 109.46965 * 65.21337 * 14 13 3 30 30 H 1.08998 * 109.46493 * 305.21035 * 14 13 3 31 31 H 1.08999 * 113.61180 * 254.52603 * 17 15 14 32 32 H 1.09000 * 113.61722 * 25.34412 * 17 15 14 33 33 H 1.08999 * 109.47534 * 322.61546 * 19 18 17 34 34 H 1.09004 * 109.47211 * 82.61854 * 19 18 17 35 35 H 1.09006 * 109.47236 * 202.61548 * 19 18 17 36 36 H 0.96708 * 113.99318 * 277.42311 * 20 18 17 37 37 H 1.09002 * 113.61772 * 270.84511 * 21 18 17 38 38 H 1.09001 * 113.61515 * 140.02286 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6041 1.9820 0.8408 5 6 3.5417 1.4443 0.1261 6 1 4.1482 1.8884 -0.6493 7 6 4.1414 0.8790 1.2315 8 7 5.4518 0.8802 1.3414 9 14 3.0923 0.1103 2.5725 10 1 2.8719 -1.3259 2.2663 11 1 3.7875 0.2370 3.8786 12 1 1.7835 0.8089 2.6386 13 7 1.6534 2.0986 -1.2563 14 6 1.5562 3.5540 -1.0819 15 6 1.0276 4.1877 -2.3702 16 1 1.4951 3.7788 -3.2659 17 6 -0.5074 4.2430 -2.4448 18 6 -0.3481 5.6438 -3.0657 19 6 -0.2206 5.6276 -4.5902 20 8 -1.3095 6.5920 -2.5980 21 6 1.0028 5.7250 -2.3354 22 1 -0.3633 0.5158 0.8888 23 1 -0.3634 0.5120 -0.8911 24 1 -0.3634 -1.0275 0.0023 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 5.8737 0.4828 2.1194 28 1 2.2958 1.8654 -1.9985 29 1 2.5423 3.9594 -0.8555 30 1 0.8745 3.7767 -0.2611 31 1 -0.9381 3.5096 -3.1266 32 1 -0.9921 4.2492 -1.4685 33 1 0.3672 4.7623 -4.8965 34 1 -1.2130 5.5693 -5.0373 35 1 0.2749 6.5396 -4.9232 36 1 -2.1613 6.5458 -3.0536 37 1 0.9310 6.1377 -1.3291 38 1 1.7922 6.1880 -2.9275 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155036.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:11 Heat of formation + Delta-G solvation = -41.133052 kcal Electronic energy + Delta-G solvation = -16311.005679 eV Core-core repulsion = 13767.652809 eV Total energy + Delta-G solvation = -2543.352870 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.72206 -36.47785 -34.95860 -32.28316 -31.60916 -29.17330 -27.17052 -25.61676 -24.75458 -22.41265 -21.16908 -19.89637 -18.60883 -16.98766 -16.66837 -15.35140 -15.09253 -14.91429 -14.20711 -13.94505 -13.50304 -13.10915 -12.85251 -12.63207 -12.23255 -12.10985 -11.84441 -11.71979 -11.46820 -11.23955 -11.18658 -10.77709 -10.68731 -10.44286 -10.20973 -9.98439 -9.75404 -9.56734 -9.39657 -9.17580 -8.56737 -7.30063 -6.12237 -4.12956 3.26570 3.37120 3.39824 4.18296 4.37814 4.61267 4.69695 4.82636 4.87926 5.19288 5.33531 5.46995 5.61601 5.63887 5.83457 5.93969 5.96554 6.01878 6.04593 6.08129 6.13812 6.20821 6.29279 6.40404 6.61794 6.69770 6.73652 6.77515 6.99757 7.12977 7.29736 7.58080 7.66286 8.07105 8.40861 8.51411 8.90482 9.51640 11.00754 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038614 B = 0.006184 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.958032 B = 4526.499163 C = 4840.285320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C 0.183 3.817 4 H 0.031 0.969 5 C -0.545 4.545 6 H 0.072 0.928 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.265 1.265 13 N -0.680 5.680 14 C 0.077 3.923 15 C -0.099 4.099 16 H 0.088 0.912 17 C -0.144 4.144 18 C 0.092 3.908 19 C -0.159 4.159 20 O -0.556 6.556 21 C -0.119 4.119 22 H 0.038 0.962 23 H 0.062 0.938 24 H 0.032 0.968 25 H 0.057 0.943 26 H 0.043 0.957 27 H 0.264 0.736 28 H 0.332 0.668 29 H 0.034 0.966 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.370 0.630 37 H 0.088 0.912 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.125 6.539 -8.695 16.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C 0.074 3.926 4 H 0.048 0.952 5 C -0.584 4.584 6 H 0.090 0.910 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.205 1.205 11 H -0.226 1.226 12 H -0.190 1.190 13 N -0.308 5.308 14 C -0.053 4.053 15 C -0.118 4.118 16 H 0.107 0.893 17 C -0.181 4.181 18 C 0.052 3.948 19 C -0.216 4.216 20 O -0.361 6.361 21 C -0.157 4.157 22 H 0.057 0.943 23 H 0.081 0.919 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.149 0.851 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.217 0.783 37 H 0.107 0.893 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.154 6.545 -8.084 15.997 hybrid contribution 0.202 -0.458 0.503 0.710 sum -11.952 6.087 -7.581 15.407 Atomic orbital electron populations 1.21726 0.97614 0.99210 1.01445 1.21809 0.93802 0.99419 1.00292 1.19563 0.94195 0.90599 0.88284 0.95160 1.21758 0.90601 1.38973 1.07081 0.91008 1.25013 0.94771 0.95313 0.97960 1.69919 1.08924 1.45134 1.29685 0.86804 0.80614 0.79849 0.80661 1.20467 1.22635 1.18969 1.60741 1.54707 1.06531 1.08865 1.21731 0.99126 0.89495 0.94942 1.22319 0.95813 0.93991 0.99647 0.89331 1.23658 0.97169 0.95741 1.01575 1.22842 0.90232 0.88945 0.92792 1.22129 1.02326 1.02975 0.94168 1.86577 1.25635 1.59651 1.64280 1.23135 0.94403 0.96851 1.01263 0.94309 0.91874 0.94927 0.92458 0.93841 0.92662 0.85131 0.94799 0.92066 0.91581 0.89573 0.90910 0.92276 0.91881 0.78277 0.89340 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.80 37.16 0.36 -2.29 16 2 C -0.12 -2.53 5.11 -26.73 -0.14 -2.67 16 3 C 0.18 4.27 1.57 -68.86 -0.11 4.16 16 4 H 0.03 0.75 6.76 -51.93 -0.35 0.40 16 5 C -0.55 -15.08 9.05 -34.44 -0.31 -15.39 16 6 H 0.07 2.15 7.97 -52.49 -0.42 1.73 16 7 C 0.07 2.07 5.45 -17.82 -0.10 1.98 16 8 N -0.90 -27.48 13.96 55.43 0.77 -26.70 16 9 Si 0.89 22.20 24.41 -169.99 -4.15 18.05 16 10 H -0.28 -6.76 6.83 56.52 0.39 -6.37 16 11 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.26 -6.37 6.53 56.52 0.37 -6.00 16 13 N -0.68 -13.44 5.68 -107.95 -0.61 -14.06 16 14 C 0.08 1.39 5.35 -3.82 -0.02 1.36 16 15 C -0.10 -1.41 3.59 -89.81 -0.32 -1.73 16 16 H 0.09 1.22 7.66 -51.93 -0.40 0.82 16 17 C -0.14 -1.87 7.04 -25.77 -0.18 -2.05 16 18 C 0.09 1.09 1.95 -89.67 -0.17 0.92 16 19 C -0.16 -1.51 9.32 37.15 0.35 -1.16 16 20 O -0.56 -6.69 13.50 -35.23 -0.48 -7.17 16 21 C -0.12 -1.58 7.05 -25.92 -0.18 -1.76 16 22 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.06 1.12 7.76 -51.93 -0.40 0.72 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.04 1.02 3.21 -51.93 -0.17 0.85 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.33 6.60 8.46 -39.29 -0.33 6.27 16 29 H 0.03 0.68 8.11 -51.93 -0.42 0.26 16 30 H 0.06 1.13 7.63 -51.93 -0.40 0.73 16 31 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 32 H 0.09 1.22 7.90 -51.93 -0.41 0.81 16 33 H 0.07 0.69 7.34 -51.93 -0.38 0.31 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.37 2.88 9.04 45.56 0.41 3.29 16 37 H 0.09 1.26 8.10 -51.93 -0.42 0.84 16 38 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 298.45 15.07 4.50 4.50 Total: -1.00 -30.31 298.45 -6.62 -36.93 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -5.82 Total: 7.07 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -0.82 Total: -18.62 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.16 Total: -40.76 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.48 Total: -7.17 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.15 Total: 18.05 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.31 -6.62 -36.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155036.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.203 kcal (2) G-P(sol) polarization free energy of solvation -30.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds