Wall clock time and date at job start Sun Mar 29 2020 21:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47413 * 2 1 4 4 H 1.08997 * 109.47312 * 54.90362 * 3 2 1 5 5 C 1.50700 * 109.47368 * 174.90815 * 3 2 1 6 6 H 1.07994 * 120.00084 * 119.99826 * 5 3 2 7 7 C 1.37879 * 119.99564 * 299.99651 * 5 3 2 8 8 N 1.31507 * 120.00076 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 120.00117 * 0.02562 * 7 5 3 10 10 H 1.48493 * 109.47336 * 89.99844 * 9 7 5 11 11 H 1.48500 * 109.47113 * 210.00181 * 9 7 5 12 12 H 1.48506 * 109.47051 * 329.99824 * 9 7 5 13 13 N 1.46905 * 109.47127 * 294.90362 * 3 2 1 14 14 C 1.46903 * 111.00197 * 154.21073 * 13 3 2 15 15 C 1.53000 * 109.46988 * 185.21254 * 14 13 3 16 16 H 1.09000 * 112.85138 * 316.19850 * 15 14 13 17 17 C 1.53784 * 113.61377 * 87.50489 * 15 14 13 18 18 C 1.54050 * 87.07463 * 139.97782 * 17 15 14 19 19 C 1.52992 * 113.61491 * 89.07334 * 18 17 15 20 20 O 1.42907 * 113.69231 * 220.05412 * 18 17 15 21 21 C 1.53780 * 86.98710 * 334.56605 * 18 17 15 22 22 H 1.09000 * 109.47043 * 300.12683 * 1 2 3 23 23 H 1.09006 * 109.47363 * 60.12189 * 1 2 3 24 24 H 1.08992 * 109.47701 * 180.12754 * 1 2 3 25 25 H 1.09000 * 109.47068 * 240.00165 * 2 1 3 26 26 H 1.08996 * 109.47276 * 120.00127 * 2 1 3 27 27 H 0.97008 * 120.00180 * 179.97438 * 8 7 5 28 28 H 1.00896 * 111.00026 * 278.16928 * 13 3 2 29 29 H 1.08999 * 109.46965 * 65.21337 * 14 13 3 30 30 H 1.08998 * 109.46493 * 305.21035 * 14 13 3 31 31 H 1.08999 * 113.61180 * 254.52603 * 17 15 14 32 32 H 1.09000 * 113.61722 * 25.34412 * 17 15 14 33 33 H 1.08999 * 109.47534 * 322.61546 * 19 18 17 34 34 H 1.09004 * 109.47211 * 82.61854 * 19 18 17 35 35 H 1.09006 * 109.47236 * 202.61548 * 19 18 17 36 36 H 0.96708 * 113.99318 * 277.42311 * 20 18 17 37 37 H 1.09002 * 113.61772 * 270.84511 * 21 18 17 38 38 H 1.09001 * 113.61515 * 140.02286 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6041 1.9820 0.8408 5 6 3.5417 1.4443 0.1261 6 1 4.1482 1.8884 -0.6493 7 6 4.1414 0.8790 1.2315 8 7 5.4518 0.8802 1.3414 9 14 3.0923 0.1103 2.5725 10 1 2.8719 -1.3259 2.2663 11 1 3.7875 0.2370 3.8786 12 1 1.7835 0.8089 2.6386 13 7 1.6534 2.0986 -1.2563 14 6 1.5562 3.5540 -1.0819 15 6 1.0276 4.1877 -2.3702 16 1 1.4951 3.7788 -3.2659 17 6 -0.5074 4.2430 -2.4448 18 6 -0.3481 5.6438 -3.0657 19 6 -0.2206 5.6276 -4.5902 20 8 -1.3095 6.5920 -2.5980 21 6 1.0028 5.7250 -2.3354 22 1 -0.3633 0.5158 0.8888 23 1 -0.3634 0.5120 -0.8911 24 1 -0.3634 -1.0275 0.0023 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 5.8737 0.4828 2.1194 28 1 2.2958 1.8654 -1.9985 29 1 2.5423 3.9594 -0.8555 30 1 0.8745 3.7767 -0.2611 31 1 -0.9381 3.5096 -3.1266 32 1 -0.9921 4.2492 -1.4685 33 1 0.3672 4.7623 -4.8965 34 1 -1.2130 5.5693 -5.0373 35 1 0.2749 6.5396 -4.9232 36 1 -2.1613 6.5458 -3.0536 37 1 0.9310 6.1377 -1.3291 38 1 1.7922 6.1880 -2.9275 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255155036.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:10 Heat of formation + Delta-G solvation = -64.178977 kcal Electronic energy + Delta-G solvation = -16312.005025 eV Core-core repulsion = 13767.652809 eV Total energy + Delta-G solvation = -2544.352216 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.76986 -38.15662 -36.09141 -34.30824 -33.21580 -30.24654 -28.85643 -26.67138 -26.26542 -24.15472 -22.41574 -21.67856 -19.74038 -19.05206 -17.65257 -17.12797 -16.34263 -16.17902 -15.58973 -15.32936 -15.07473 -14.83332 -14.31691 -13.87397 -13.66045 -13.53973 -13.21575 -13.06614 -12.86219 -12.71863 -12.45020 -12.36521 -12.08527 -11.93225 -11.64942 -11.52089 -11.27772 -11.19912 -11.06922 -10.71204 -10.51477 -9.05373 -8.35302 -6.40137 1.28095 1.33220 1.43851 2.28064 3.00209 3.23826 3.54495 3.65458 3.71861 3.91676 4.05882 4.34497 4.42339 4.47877 4.61037 4.66539 4.70419 4.80632 4.83886 4.92270 4.95260 4.96588 4.99199 5.15220 5.16337 5.22439 5.31360 5.41351 5.44894 5.49735 5.58737 5.64986 6.08016 6.40329 6.62841 6.80622 6.96539 7.29090 8.81006 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038614 B = 0.006184 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.958032 B = 4526.499163 C = 4840.285320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.116 4.116 3 C 0.188 3.812 4 H 0.020 0.980 5 C -0.546 4.546 6 H 0.034 0.966 7 C 0.015 3.985 8 N -0.947 5.947 9 Si 0.951 3.049 10 H -0.264 1.264 11 H -0.300 1.300 12 H -0.250 1.250 13 N -0.664 5.664 14 C 0.080 3.920 15 C -0.095 4.095 16 H 0.098 0.902 17 C -0.139 4.139 18 C 0.104 3.896 19 C -0.155 4.155 20 O -0.572 6.572 21 C -0.126 4.126 22 H 0.038 0.962 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.031 0.969 27 H 0.265 0.735 28 H 0.332 0.668 29 H 0.004 0.996 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.390 0.610 37 H 0.072 0.928 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.700 6.275 -9.524 18.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.154 4.154 3 C 0.078 3.922 4 H 0.038 0.962 5 C -0.585 4.585 6 H 0.052 0.948 7 C -0.183 4.183 8 N -0.587 5.587 9 Si 0.778 3.222 10 H -0.190 1.190 11 H -0.228 1.228 12 H -0.174 1.174 13 N -0.292 5.292 14 C -0.050 4.050 15 C -0.114 4.114 16 H 0.116 0.884 17 C -0.177 4.177 18 C 0.064 3.936 19 C -0.212 4.212 20 O -0.381 6.381 21 C -0.164 4.164 22 H 0.058 0.942 23 H 0.089 0.911 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.149 0.851 29 H 0.023 0.977 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.240 0.760 37 H 0.091 0.909 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.766 6.290 -8.940 18.372 hybrid contribution 1.051 -0.292 0.705 1.299 sum -13.715 5.998 -8.235 17.085 Atomic orbital electron populations 1.21636 0.94531 1.01034 1.01895 1.21740 0.96516 0.97480 0.99678 1.19441 0.91083 0.92223 0.89475 0.96247 1.22088 0.92911 1.37650 1.05845 0.94821 1.25863 0.95820 0.96092 1.00537 1.70061 1.10901 1.46931 1.30784 0.85817 0.79354 0.79705 0.77339 1.18968 1.22815 1.17385 1.60774 1.53810 1.07421 1.07226 1.21760 0.97621 0.88479 0.97167 1.22240 0.97040 0.94458 0.97654 0.88403 1.23599 0.95533 0.97163 1.01412 1.22712 0.89039 0.87857 0.94025 1.22113 1.03763 1.03276 0.92062 1.86530 1.26902 1.59495 1.65140 1.23162 0.96315 0.95906 1.01051 0.94238 0.91057 0.92441 0.92503 0.95083 0.92569 0.85125 0.97727 0.92655 0.90279 0.90893 0.90759 0.90163 0.91468 0.76006 0.90888 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.53 9.80 71.98 0.71 -3.82 16 2 C -0.12 -4.88 5.11 30.59 0.16 -4.73 16 3 C 0.19 8.72 1.57 44.17 0.07 8.79 16 4 H 0.02 0.96 6.76 -2.39 -0.02 0.94 16 5 C -0.55 -30.96 9.05 25.60 0.23 -30.73 16 6 H 0.03 2.11 7.97 -2.91 -0.02 2.09 16 7 C 0.01 0.88 5.45 84.66 0.46 1.34 16 8 N -0.95 -59.54 13.96 21.45 0.30 -59.24 16 9 Si 0.95 45.71 24.41 68.60 1.67 47.39 16 10 H -0.26 -12.03 6.83 99.48 0.68 -11.35 16 11 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 12 H -0.25 -11.30 6.53 99.48 0.65 -10.65 16 13 N -0.66 -26.02 5.68 -495.44 -2.81 -28.84 16 14 C 0.08 2.89 5.35 86.30 0.46 3.35 16 15 C -0.10 -2.62 3.59 -10.27 -0.04 -2.65 16 16 H 0.10 2.54 7.66 -2.39 -0.02 2.52 16 17 C -0.14 -3.35 7.04 31.21 0.22 -3.13 16 18 C 0.10 2.23 1.95 -10.18 -0.02 2.21 16 19 C -0.15 -2.45 9.32 71.98 0.67 -1.78 16 20 O -0.57 -12.45 13.50 -148.98 -2.01 -14.46 16 21 C -0.13 -3.25 7.05 31.12 0.22 -3.03 16 22 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.07 2.29 7.76 -2.38 -0.02 2.27 16 24 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.03 1.38 3.21 -2.39 -0.01 1.38 16 27 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 28 H 0.33 13.20 8.46 -89.70 -0.76 12.44 16 29 H 0.00 0.19 8.11 -2.39 -0.02 0.17 16 30 H 0.05 2.06 7.63 -2.39 -0.02 2.04 16 31 H 0.08 1.70 8.10 -2.39 -0.02 1.68 16 32 H 0.07 1.96 7.90 -2.39 -0.02 1.94 16 33 H 0.07 1.17 7.34 -2.39 -0.02 1.15 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.39 4.92 9.04 -74.05 -0.67 4.25 16 37 H 0.07 2.09 8.10 -2.39 -0.02 2.07 16 38 H 0.08 1.85 8.10 -2.39 -0.02 1.83 16 Total: -1.00 -65.96 298.45 -0.19 -66.15 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: -0.48 Total: 23.19 kcal Atomic # 6 Polarization: -37.32 SS G_CDS: 3.14 Total: -34.19 kcal Atomic # 7 Polarization: -85.56 SS G_CDS: -2.51 Total: -88.08 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -2.01 Total: -14.46 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.67 Total: 47.39 kcal Total: -65.96 -0.19 -66.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155036.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.969 kcal (2) G-P(sol) polarization free energy of solvation -65.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds