Wall clock time and date at job start Sun Mar 29 2020 21:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47381 * 2 1 4 4 H 1.09003 * 109.47009 * 305.85052 * 3 2 1 5 5 C 1.50698 * 109.47119 * 185.84736 * 3 2 1 6 6 H 1.07997 * 119.99882 * 243.40665 * 5 3 2 7 7 C 1.37881 * 119.99932 * 63.41000 * 5 3 2 8 8 N 1.31518 * 119.99519 * 196.03829 * 7 5 3 9 9 Si 1.86793 * 120.00140 * 16.03872 * 7 5 3 10 10 H 1.48507 * 109.47120 * 92.73427 * 9 7 5 11 11 H 1.48494 * 109.47175 * 212.72866 * 9 7 5 12 12 H 1.48503 * 109.47231 * 332.73601 * 9 7 5 13 13 N 1.46897 * 109.46991 * 65.84503 * 3 2 1 14 14 C 1.46901 * 111.00234 * 258.60109 * 13 3 2 15 15 C 1.52995 * 109.47256 * 175.29380 * 14 13 3 16 16 H 1.09000 * 112.84706 * 316.18773 * 15 14 13 17 17 C 1.53775 * 113.61908 * 87.50042 * 15 14 13 18 18 C 1.53784 * 87.08350 * 139.97810 * 17 15 14 19 19 C 1.53003 * 113.60860 * 89.11791 * 18 17 15 20 20 O 1.42898 * 113.69301 * 220.00330 * 18 17 15 21 21 C 1.53776 * 87.08012 * 334.56722 * 18 17 15 22 22 H 1.09003 * 109.47141 * 295.85676 * 1 2 3 23 23 H 1.08997 * 109.47113 * 55.85672 * 1 2 3 24 24 H 1.08997 * 109.47197 * 175.85860 * 1 2 3 25 25 H 1.09006 * 109.46715 * 240.00066 * 2 1 3 26 26 H 1.09005 * 109.47174 * 120.00153 * 2 1 3 27 27 H 0.96997 * 119.99944 * 179.97438 * 8 7 5 28 28 H 1.00903 * 111.00223 * 134.64818 * 13 3 2 29 29 H 1.09008 * 109.46563 * 295.28953 * 14 13 3 30 30 H 1.09001 * 109.47420 * 55.28542 * 14 13 3 31 31 H 1.08995 * 113.61588 * 254.52677 * 17 15 14 32 32 H 1.09000 * 113.61546 * 25.42909 * 17 15 14 33 33 H 1.08997 * 109.47532 * 322.49727 * 19 18 17 34 34 H 1.09001 * 109.47546 * 82.50362 * 19 18 17 35 35 H 1.09002 * 109.46518 * 202.50059 * 19 18 17 36 36 H 0.96692 * 114.00629 * 277.54251 * 20 18 17 37 37 H 1.08995 * 113.61484 * 270.87802 * 21 18 17 38 38 H 1.09005 * 113.60956 * 139.97621 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5937 1.9857 -0.8330 5 6 3.5401 1.4449 -0.1447 6 1 4.1586 1.8358 0.6496 7 6 4.1228 0.9481 -1.2914 8 7 5.4048 0.6549 -1.3034 9 14 3.0915 0.6915 -2.8275 10 1 3.1661 1.9038 -3.6820 11 1 3.6093 -0.4782 -3.5816 12 1 1.6792 0.4452 -2.4401 13 7 1.6690 2.0930 1.2637 14 6 0.4995 2.9637 1.0841 15 6 0.0724 3.5301 2.4396 16 1 0.0740 2.7806 3.2310 17 6 0.7978 4.8316 2.8198 18 6 -0.5498 5.3303 3.3676 19 6 -0.7853 4.9704 4.8360 20 8 -0.8108 6.7065 3.0850 21 6 -1.2206 4.3607 2.3804 22 1 -0.3633 0.4482 0.9248 23 1 -0.3633 0.5768 -0.8505 24 1 -0.3633 -1.0249 -0.0742 25 1 1.8933 -0.5139 -0.8901 26 1 1.8934 -0.5139 0.8900 27 1 5.8148 0.3050 -2.1099 28 1 2.4473 2.6077 1.6477 29 1 0.7564 3.7831 0.4126 30 1 -0.3206 2.3871 0.6564 31 1 1.5592 4.6987 3.5882 32 1 1.1565 5.3985 1.9607 33 1 -0.3861 3.9758 5.0349 34 1 -0.2829 5.6978 5.4735 35 1 -1.8550 4.9811 5.0455 36 1 -0.3915 7.3213 3.7024 37 1 -1.4137 4.7988 1.4012 38 1 -2.0886 3.8473 2.7943 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155037.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:12 Heat of formation + Delta-G solvation = -41.419317 kcal Electronic energy + Delta-G solvation = -16322.394307 eV Core-core repulsion = 13779.029024 eV Total energy + Delta-G solvation = -2543.365283 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.82192 -36.55014 -34.95723 -32.34173 -31.32066 -29.26414 -27.50362 -25.72234 -24.66983 -22.42617 -21.21707 -19.62892 -18.67402 -17.16722 -16.53764 -15.41314 -15.25372 -14.96209 -14.19063 -13.90776 -13.40544 -12.91987 -12.89008 -12.75175 -12.35213 -12.15477 -11.92713 -11.78386 -11.63714 -11.31717 -11.05064 -10.82024 -10.60724 -10.48625 -10.34979 -9.92539 -9.79966 -9.65486 -9.27471 -9.12561 -8.42053 -7.39511 -6.13611 -4.08232 3.27446 3.37272 3.41373 4.13221 4.40900 4.56214 4.62312 4.77685 4.81767 5.16615 5.24270 5.43778 5.56363 5.64036 5.76765 5.86703 5.88233 5.92377 6.01189 6.07268 6.09767 6.23270 6.26684 6.30186 6.41017 6.61960 6.73602 6.80491 7.06545 7.09710 7.48311 7.62164 7.67648 8.02384 8.39745 8.63604 8.95759 9.53191 10.99330 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038513 B = 0.006091 C = 0.005796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.850213 B = 4595.718825 C = 4829.347178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C 0.191 3.809 4 H 0.003 0.997 5 C -0.534 4.534 6 H 0.075 0.925 7 C 0.078 3.922 8 N -0.890 5.890 9 Si 0.863 3.137 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.250 1.250 13 N -0.679 5.679 14 C 0.067 3.933 15 C -0.100 4.100 16 H 0.098 0.902 17 C -0.158 4.158 18 C 0.096 3.904 19 C -0.159 4.159 20 O -0.556 6.556 21 C -0.118 4.118 22 H 0.055 0.945 23 H 0.036 0.964 24 H 0.034 0.966 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.264 0.736 28 H 0.338 0.662 29 H 0.021 0.979 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.372 0.628 37 H 0.087 0.913 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.251 7.092 8.632 16.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C 0.082 3.918 4 H 0.020 0.980 5 C -0.571 4.571 6 H 0.093 0.907 7 C -0.125 4.125 8 N -0.527 5.527 9 Si 0.690 3.310 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.174 1.174 13 N -0.310 5.310 14 C -0.063 4.063 15 C -0.119 4.119 16 H 0.116 0.884 17 C -0.196 4.196 18 C 0.056 3.944 19 C -0.217 4.217 20 O -0.362 6.362 21 C -0.156 4.156 22 H 0.074 0.926 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.156 0.844 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.219 0.781 37 H 0.105 0.895 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.806 6.206 8.249 16.448 hybrid contribution 0.405 0.805 -0.987 1.336 sum -12.401 7.011 7.262 15.990 Atomic orbital electron populations 1.21876 0.98680 0.99377 1.00632 1.21846 0.92665 0.99390 1.00712 1.19445 0.95348 0.90786 0.86231 0.97984 1.21245 0.89561 1.42432 1.03911 0.90721 1.24900 0.94756 0.94045 0.98807 1.69994 1.11715 1.42622 1.28388 0.87197 0.82417 0.77792 0.83610 1.20864 1.21307 1.17410 1.60546 1.07914 1.33133 1.29425 1.21988 0.95365 0.94948 0.93979 1.22385 0.94943 0.95234 0.99339 0.88374 1.23754 0.96648 0.97609 1.01597 1.22721 0.96404 0.81179 0.94098 1.22141 1.02350 1.02733 0.94444 1.86563 1.76624 1.15954 1.57056 1.23129 0.97486 0.95453 0.99524 0.92555 0.94455 0.94726 0.93307 0.92310 0.92669 0.84435 0.96043 0.91366 0.91308 0.89515 0.90793 0.92196 0.91846 0.78144 0.89478 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 8.74 37.16 0.32 -2.44 16 2 C -0.11 -2.40 4.85 -26.73 -0.13 -2.53 16 3 C 0.19 4.49 1.75 -68.87 -0.12 4.37 16 4 H 0.00 0.06 6.35 -51.93 -0.33 -0.27 16 5 C -0.53 -14.82 9.03 -34.44 -0.31 -15.13 16 6 H 0.07 2.23 7.67 -52.49 -0.40 1.83 16 7 C 0.08 2.23 5.31 -17.82 -0.09 2.14 16 8 N -0.89 -27.01 13.96 55.43 0.77 -26.24 16 9 Si 0.86 21.31 25.76 -169.99 -4.38 16.93 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.25 -5.85 5.49 56.52 0.31 -5.54 16 13 N -0.68 -13.68 6.09 -107.95 -0.66 -14.34 16 14 C 0.07 1.14 4.87 -3.83 -0.02 1.12 16 15 C -0.10 -1.38 3.59 -89.81 -0.32 -1.70 16 16 H 0.10 1.34 7.66 -51.93 -0.40 0.94 16 17 C -0.16 -2.04 7.03 -25.92 -0.18 -2.23 16 18 C 0.10 1.11 1.94 -89.81 -0.17 0.94 16 19 C -0.16 -1.47 9.32 37.16 0.35 -1.13 16 20 O -0.56 -6.59 13.50 -35.23 -0.48 -7.06 16 21 C -0.12 -1.47 7.06 -25.92 -0.18 -1.65 16 22 H 0.06 0.99 6.65 -51.93 -0.35 0.64 16 23 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 1.14 4.88 -51.93 -0.25 0.89 16 26 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.34 6.96 7.97 -39.29 -0.31 6.64 16 29 H 0.02 0.39 7.84 -51.92 -0.41 -0.02 16 30 H 0.07 1.16 6.01 -51.93 -0.31 0.85 16 31 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 32 H 0.09 1.23 7.90 -51.93 -0.41 0.82 16 33 H 0.07 0.69 7.34 -51.93 -0.38 0.30 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.37 2.87 9.04 45.56 0.41 3.28 16 37 H 0.09 1.16 8.10 -51.93 -0.42 0.74 16 38 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 LS Contribution 295.12 15.07 4.45 4.45 Total: -1.00 -30.26 295.12 -6.90 -37.16 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -5.74 Total: 7.34 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: -0.86 Total: -18.23 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.12 Total: -40.58 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.48 Total: -7.06 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.38 Total: 16.93 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.26 -6.90 -37.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155037.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.264 kcal (2) G-P(sol) polarization free energy of solvation -30.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds