Wall clock time and date at job start Sun Mar 29 2020 21:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47381 * 2 1 4 4 H 1.09003 * 109.47009 * 305.85052 * 3 2 1 5 5 C 1.50698 * 109.47119 * 185.84736 * 3 2 1 6 6 H 1.07997 * 119.99882 * 243.40665 * 5 3 2 7 7 C 1.37881 * 119.99932 * 63.41000 * 5 3 2 8 8 N 1.31518 * 119.99519 * 196.03829 * 7 5 3 9 9 Si 1.86793 * 120.00140 * 16.03872 * 7 5 3 10 10 H 1.48507 * 109.47120 * 92.73427 * 9 7 5 11 11 H 1.48494 * 109.47175 * 212.72866 * 9 7 5 12 12 H 1.48503 * 109.47231 * 332.73601 * 9 7 5 13 13 N 1.46897 * 109.46991 * 65.84503 * 3 2 1 14 14 C 1.46901 * 111.00234 * 258.60109 * 13 3 2 15 15 C 1.52995 * 109.47256 * 175.29380 * 14 13 3 16 16 H 1.09000 * 112.84706 * 316.18773 * 15 14 13 17 17 C 1.53775 * 113.61908 * 87.50042 * 15 14 13 18 18 C 1.53784 * 87.08350 * 139.97810 * 17 15 14 19 19 C 1.53003 * 113.60860 * 89.11791 * 18 17 15 20 20 O 1.42898 * 113.69301 * 220.00330 * 18 17 15 21 21 C 1.53776 * 87.08012 * 334.56722 * 18 17 15 22 22 H 1.09003 * 109.47141 * 295.85676 * 1 2 3 23 23 H 1.08997 * 109.47113 * 55.85672 * 1 2 3 24 24 H 1.08997 * 109.47197 * 175.85860 * 1 2 3 25 25 H 1.09006 * 109.46715 * 240.00066 * 2 1 3 26 26 H 1.09005 * 109.47174 * 120.00153 * 2 1 3 27 27 H 0.96997 * 119.99944 * 179.97438 * 8 7 5 28 28 H 1.00903 * 111.00223 * 134.64818 * 13 3 2 29 29 H 1.09008 * 109.46563 * 295.28953 * 14 13 3 30 30 H 1.09001 * 109.47420 * 55.28542 * 14 13 3 31 31 H 1.08995 * 113.61588 * 254.52677 * 17 15 14 32 32 H 1.09000 * 113.61546 * 25.42909 * 17 15 14 33 33 H 1.08997 * 109.47532 * 322.49727 * 19 18 17 34 34 H 1.09001 * 109.47546 * 82.50362 * 19 18 17 35 35 H 1.09002 * 109.46518 * 202.50059 * 19 18 17 36 36 H 0.96692 * 114.00629 * 277.54251 * 20 18 17 37 37 H 1.08995 * 113.61484 * 270.87802 * 21 18 17 38 38 H 1.09005 * 113.60956 * 139.97621 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5937 1.9857 -0.8330 5 6 3.5401 1.4449 -0.1447 6 1 4.1586 1.8358 0.6496 7 6 4.1228 0.9481 -1.2914 8 7 5.4048 0.6549 -1.3034 9 14 3.0915 0.6915 -2.8275 10 1 3.1661 1.9038 -3.6820 11 1 3.6093 -0.4782 -3.5816 12 1 1.6792 0.4452 -2.4401 13 7 1.6690 2.0930 1.2637 14 6 0.4995 2.9637 1.0841 15 6 0.0724 3.5301 2.4396 16 1 0.0740 2.7806 3.2310 17 6 0.7978 4.8316 2.8198 18 6 -0.5498 5.3303 3.3676 19 6 -0.7853 4.9704 4.8360 20 8 -0.8108 6.7065 3.0850 21 6 -1.2206 4.3607 2.3804 22 1 -0.3633 0.4482 0.9248 23 1 -0.3633 0.5768 -0.8505 24 1 -0.3633 -1.0249 -0.0742 25 1 1.8933 -0.5139 -0.8901 26 1 1.8934 -0.5139 0.8900 27 1 5.8148 0.3050 -2.1099 28 1 2.4473 2.6077 1.6477 29 1 0.7564 3.7831 0.4126 30 1 -0.3206 2.3871 0.6564 31 1 1.5592 4.6987 3.5882 32 1 1.1565 5.3985 1.9607 33 1 -0.3861 3.9758 5.0349 34 1 -0.2829 5.6978 5.4735 35 1 -1.8550 4.9811 5.0455 36 1 -0.3915 7.3213 3.7024 37 1 -1.4137 4.7988 1.4012 38 1 -2.0886 3.8473 2.7943 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255155037.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:12 Heat of formation + Delta-G solvation = -64.337593 kcal Electronic energy + Delta-G solvation = -16323.388118 eV Core-core repulsion = 13779.029024 eV Total energy + Delta-G solvation = -2544.359094 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.82877 -38.17851 -36.07160 -34.36779 -32.89319 -30.41972 -29.05428 -26.74160 -26.15544 -24.17352 -22.39452 -21.42124 -19.74332 -19.04799 -17.69415 -17.13202 -16.39859 -16.08745 -15.74156 -15.30205 -14.90332 -14.61181 -14.41231 -13.92106 -13.66946 -13.61781 -13.16053 -13.07090 -12.87885 -12.73372 -12.67299 -12.37361 -11.93194 -11.90260 -11.75711 -11.48133 -11.26065 -11.13091 -10.96132 -10.64249 -10.50210 -9.07719 -8.35052 -6.33889 1.30980 1.35281 1.45909 2.32556 2.99284 3.22811 3.55645 3.63315 3.70746 3.90603 3.95071 4.42626 4.48036 4.53630 4.55995 4.62747 4.68616 4.79681 4.83576 4.86188 4.91276 4.92153 4.99212 5.11332 5.20165 5.22042 5.31473 5.38796 5.41063 5.55072 5.59993 5.81206 6.02637 6.49859 6.67804 6.88212 6.92340 7.31860 8.81428 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038513 B = 0.006091 C = 0.005796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.850213 B = 4595.718825 C = 4829.347178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C 0.195 3.805 4 H -0.002 1.002 5 C -0.539 4.539 6 H 0.037 0.963 7 C 0.023 3.977 8 N -0.938 5.938 9 Si 0.925 3.075 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.227 1.227 13 N -0.676 5.676 14 C 0.068 3.932 15 C -0.096 4.096 16 H 0.104 0.896 17 C -0.162 4.162 18 C 0.105 3.895 19 C -0.155 4.155 20 O -0.573 6.573 21 C -0.118 4.118 22 H 0.066 0.934 23 H 0.041 0.959 24 H 0.056 0.944 25 H 0.036 0.964 26 H 0.047 0.953 27 H 0.266 0.734 28 H 0.332 0.668 29 H 0.008 0.992 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.389 0.611 37 H 0.075 0.925 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.827 7.216 9.071 18.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.147 4.147 3 C 0.086 3.914 4 H 0.016 0.984 5 C -0.577 4.577 6 H 0.055 0.945 7 C -0.176 4.176 8 N -0.577 5.577 9 Si 0.749 3.251 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.150 1.150 13 N -0.306 5.306 14 C -0.061 4.061 15 C -0.114 4.114 16 H 0.123 0.877 17 C -0.200 4.200 18 C 0.065 3.935 19 C -0.213 4.213 20 O -0.381 6.381 21 C -0.156 4.156 22 H 0.085 0.915 23 H 0.060 0.940 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.149 0.851 29 H 0.027 0.973 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.239 0.761 37 H 0.094 0.906 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.404 6.348 8.712 18.801 hybrid contribution 1.279 0.831 -1.045 1.848 sum -14.125 7.179 7.667 17.602 Atomic orbital electron populations 1.21775 0.95329 1.01132 1.01413 1.21762 0.95637 0.97716 0.99608 1.19331 0.92355 0.92202 0.87551 0.98422 1.21568 0.91857 1.41439 1.02858 0.94470 1.25739 0.95845 0.93953 1.02052 1.70121 1.13766 1.44415 1.29417 0.86196 0.81905 0.77704 0.79291 1.20627 1.20982 1.14977 1.60562 1.08548 1.33953 1.27494 1.22063 0.93994 0.94084 0.95961 1.22297 0.96156 0.95543 0.97431 0.87747 1.23749 0.97828 0.97218 1.01235 1.22657 0.94560 0.81096 0.95231 1.22121 1.03172 1.03204 0.92754 1.86517 1.76917 1.16391 1.58259 1.23113 0.97372 0.95516 0.99552 0.91515 0.93987 0.92472 0.94575 0.93385 0.92513 0.85085 0.97333 0.90802 0.90827 0.91358 0.90732 0.90625 0.90968 0.76105 0.90598 0.89407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.74 8.74 71.98 0.63 -4.11 16 2 C -0.11 -4.69 4.85 30.59 0.15 -4.54 16 3 C 0.20 9.11 1.75 44.17 0.08 9.19 16 4 H 0.00 -0.09 6.35 -2.39 -0.02 -0.10 16 5 C -0.54 -30.69 9.03 25.60 0.23 -30.46 16 6 H 0.04 2.33 7.67 -2.91 -0.02 2.31 16 7 C 0.02 1.34 5.31 84.65 0.45 1.79 16 8 N -0.94 -58.49 13.96 21.45 0.30 -58.19 16 9 Si 0.93 43.94 25.76 68.60 1.77 45.71 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 11 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.23 -9.85 5.49 99.48 0.55 -9.31 16 13 N -0.68 -26.98 6.09 -495.45 -3.02 -29.99 16 14 C 0.07 2.25 4.87 86.30 0.42 2.67 16 15 C -0.10 -2.47 3.59 -10.27 -0.04 -2.51 16 16 H 0.10 2.62 7.66 -2.39 -0.02 2.60 16 17 C -0.16 -4.02 7.03 31.12 0.22 -3.81 16 18 C 0.11 2.19 1.94 -10.27 -0.02 2.17 16 19 C -0.16 -2.40 9.32 71.98 0.67 -1.73 16 20 O -0.57 -12.38 13.50 -148.98 -2.01 -14.39 16 21 C -0.12 -2.68 7.06 31.12 0.22 -2.46 16 22 H 0.07 2.12 6.65 -2.39 -0.02 2.11 16 23 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.04 1.63 4.88 -2.38 -0.01 1.62 16 26 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 27 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 28 H 0.33 13.93 7.97 -89.69 -0.71 13.21 16 29 H 0.01 0.30 7.84 -2.38 -0.02 0.28 16 30 H 0.07 2.35 6.01 -2.39 -0.01 2.33 16 31 H 0.07 1.72 8.10 -2.39 -0.02 1.71 16 32 H 0.07 1.94 7.90 -2.39 -0.02 1.92 16 33 H 0.07 1.16 7.34 -2.39 -0.02 1.14 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.39 5.13 9.04 -74.06 -0.67 4.46 16 37 H 0.08 1.90 8.10 -2.39 -0.02 1.89 16 38 H 0.09 1.70 8.10 -2.38 -0.02 1.68 16 Total: -1.00 -65.53 295.12 -0.45 -65.99 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: -0.50 Total: 24.67 kcal Atomic # 6 Polarization: -36.80 SS G_CDS: 3.01 Total: -33.79 kcal Atomic # 7 Polarization: -85.47 SS G_CDS: -2.72 Total: -88.19 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -2.01 Total: -14.39 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.77 Total: 45.71 kcal Total: -65.53 -0.45 -65.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155037.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.650 kcal (2) G-P(sol) polarization free energy of solvation -65.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds