Wall clock time and date at job start Sun Mar 29 2020 21:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47382 * 2 1 4 4 H 1.08995 * 109.47114 * 305.30778 * 3 2 1 5 5 C 1.50703 * 109.46838 * 185.30755 * 3 2 1 6 6 H 1.07998 * 120.00472 * 239.99820 * 5 3 2 7 7 C 1.37881 * 119.99565 * 60.00551 * 5 3 2 8 8 N 1.31514 * 120.00086 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99469 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47003 * 89.99943 * 9 7 5 11 11 H 1.48506 * 109.46958 * 209.99882 * 9 7 5 12 12 H 1.48494 * 109.47526 * 329.99400 * 9 7 5 13 13 N 1.46900 * 109.47164 * 65.31443 * 3 2 1 14 14 C 1.46900 * 111.00158 * 222.12246 * 13 3 2 15 15 C 1.53001 * 109.52033 * 305.83404 * 14 13 3 16 16 C 1.53172 * 109.52661 * 185.70286 * 14 13 3 17 17 C 1.53180 * 109.03923 * 183.11197 * 16 14 13 18 18 C 1.53090 * 109.16083 * 56.98272 * 17 16 14 19 19 O 1.42910 * 109.41414 * 302.39009 * 18 17 16 20 20 C 1.42909 * 114.15127 * 61.13141 * 19 18 17 21 21 H 1.08997 * 109.47326 * 294.87137 * 1 2 3 22 22 H 1.09008 * 109.46639 * 54.86214 * 1 2 3 23 23 H 1.08991 * 109.47664 * 174.86560 * 1 2 3 24 24 H 1.09007 * 109.47016 * 119.99732 * 2 1 3 25 25 H 1.09002 * 109.47343 * 239.99582 * 2 1 3 26 26 H 0.96998 * 119.99491 * 180.02562 * 8 7 5 27 27 H 1.00902 * 111.00149 * 346.07366 * 13 3 2 28 28 H 1.09003 * 109.47581 * 66.58059 * 15 14 13 29 29 H 1.09002 * 109.47348 * 186.58368 * 15 14 13 30 30 H 1.09005 * 109.46866 * 306.58276 * 15 14 13 31 31 H 1.08999 * 109.54452 * 302.98031 * 16 14 13 32 32 H 1.09002 * 109.53864 * 63.15770 * 16 14 13 33 33 H 1.08997 * 109.52436 * 176.89216 * 17 16 14 34 34 H 1.09003 * 109.51995 * 297.01953 * 17 16 14 35 35 H 1.08995 * 109.48380 * 62.37163 * 18 17 16 36 36 H 1.09006 * 109.47975 * 182.41296 * 18 17 16 37 37 H 1.08996 * 109.53621 * 178.92550 * 20 19 18 38 38 H 1.08993 * 109.43204 * 58.88180 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6012 1.9830 -0.8386 5 6 3.5413 1.4444 -0.1314 6 1 4.1506 1.8875 0.6423 7 6 4.1370 0.8804 -1.2397 8 7 3.3950 0.3405 -2.1818 9 14 5.9978 0.8834 -1.4030 10 1 6.5508 -0.3492 -0.7864 11 1 6.3686 0.9272 -2.8403 12 1 6.5535 2.0747 -0.7121 13 7 1.6580 2.0970 1.2584 14 6 1.1863 3.4671 1.0172 15 6 2.2455 4.2413 0.2300 16 6 0.9328 4.1647 2.3571 17 6 0.3681 5.5639 2.0930 18 6 -0.9051 5.4414 1.2518 19 8 -0.6056 4.7565 0.0338 20 6 -0.1177 3.4257 0.2161 21 1 -0.3634 0.4322 0.9323 22 1 -0.3633 0.5915 -0.8405 23 1 -0.3634 -1.0234 -0.0920 24 1 1.8933 -0.5138 0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 3.8141 -0.0565 -2.9613 27 1 0.9623 1.5565 1.7504 28 1 2.3395 3.8152 -0.7689 29 1 1.9483 5.2871 0.1524 30 1 3.2034 4.1730 0.7457 31 1 0.2158 3.5860 2.9395 32 1 1.8694 4.2462 2.9086 33 1 0.1330 6.0468 3.0415 34 1 1.1058 6.1587 1.5544 35 1 -1.6562 4.8812 1.8086 36 1 -1.2878 6.4365 1.0246 37 1 0.0673 2.9689 -0.7561 38 1 -0.8590 2.8388 0.7585 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255163696.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:46 Heat of formation + Delta-G solvation = -56.955062 kcal Electronic energy + Delta-G solvation = -17309.472187 eV Core-core repulsion = 14765.433223 eV Total energy + Delta-G solvation = -2544.038964 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.59140 -36.37819 -33.73660 -32.14281 -31.26920 -28.61399 -26.96380 -25.80537 -24.72821 -22.99740 -21.83439 -19.50570 -18.38849 -16.34466 -16.21182 -15.56615 -14.85180 -14.70441 -14.43436 -13.76010 -13.44502 -13.00725 -12.70312 -12.34503 -12.23815 -11.98608 -11.34645 -11.22049 -11.07050 -10.91211 -10.79625 -10.67141 -10.57069 -10.41875 -10.04189 -9.83274 -9.59885 -9.47071 -9.41540 -8.91291 -8.29351 -7.15683 -5.92539 -3.94922 3.35039 3.41699 3.45773 4.17506 4.48326 5.00397 5.11805 5.16078 5.33610 5.35596 5.45985 5.56033 5.67860 5.87418 5.96644 6.03169 6.10879 6.13068 6.15997 6.27477 6.38795 6.48367 6.52293 6.68252 6.80821 6.84035 7.06269 7.11516 7.28305 7.42044 7.57524 7.78193 7.96791 8.34189 8.47824 8.74471 9.12269 9.69093 11.12804 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031546 B = 0.008894 C = 0.007823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.387735 B = 3147.493390 C = 3578.504365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.135 4.135 3 C 0.215 3.785 4 H 0.018 0.982 5 C -0.482 4.482 6 H 0.061 0.939 7 C 0.052 3.948 8 N -0.898 5.898 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.671 5.671 14 C 0.090 3.910 15 C -0.122 4.122 16 C -0.107 4.107 17 C -0.156 4.156 18 C 0.060 3.940 19 O -0.383 6.383 20 C 0.035 3.965 21 H 0.032 0.968 22 H 0.043 0.957 23 H 0.037 0.963 24 H 0.039 0.961 25 H 0.101 0.899 26 H 0.258 0.742 27 H 0.317 0.683 28 H 0.066 0.934 29 H 0.043 0.957 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.042 0.958 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.144 6.465 6.355 11.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C 0.108 3.892 4 H 0.036 0.964 5 C -0.521 4.521 6 H 0.079 0.921 7 C -0.147 4.147 8 N -0.539 5.539 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.303 5.303 14 C -0.002 4.002 15 C -0.180 4.180 16 C -0.145 4.145 17 C -0.194 4.194 18 C -0.017 4.017 19 O -0.300 6.300 20 C -0.043 4.043 21 H 0.051 0.949 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.119 0.881 26 H 0.068 0.932 27 H 0.135 0.865 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.492 6.657 6.136 11.140 hybrid contribution 0.119 -0.485 -0.248 0.558 sum -6.373 6.172 5.888 10.648 Atomic orbital electron populations 1.21923 0.99668 0.99783 0.99432 1.21951 0.91172 1.01095 1.03201 1.19260 0.95574 0.89292 0.85029 0.96442 1.21229 0.91171 1.35539 1.04153 0.92062 1.24957 0.97889 0.95894 0.96002 1.69861 1.34569 1.39743 1.09708 0.86585 0.86132 0.78302 0.76881 1.20944 1.21537 1.20021 1.60943 1.42877 1.00784 1.25687 1.21404 0.93115 0.91981 0.93687 1.21729 0.97861 0.97368 1.01019 1.21593 1.01082 0.94558 0.97274 1.22252 0.98651 0.98385 1.00101 1.22511 0.95662 0.96893 0.86599 1.87903 1.85129 1.27741 1.29251 1.23636 0.95273 0.83003 1.02405 0.94865 0.93805 0.94357 0.94221 0.88073 0.93186 0.86502 0.91474 0.93844 0.92066 0.92783 0.90941 0.91570 0.90682 0.93926 0.89600 0.88398 0.94354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.71 37.16 0.36 -2.49 16 2 C -0.14 -3.11 5.21 -26.73 -0.14 -3.25 16 3 C 0.22 5.13 1.18 -68.86 -0.08 5.05 16 4 H 0.02 0.47 4.98 -51.93 -0.26 0.21 16 5 C -0.48 -12.93 7.78 -34.44 -0.27 -13.20 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.05 1.43 5.29 -17.82 -0.09 1.34 16 8 N -0.90 -25.25 11.29 55.43 0.63 -24.62 16 9 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.67 -13.75 5.93 -94.11 -0.56 -14.31 16 14 C 0.09 1.65 0.69 -131.46 -0.09 1.56 16 15 C -0.12 -2.42 7.16 37.16 0.27 -2.15 16 16 C -0.11 -1.63 5.12 -26.55 -0.14 -1.76 16 17 C -0.16 -2.02 5.78 -26.59 -0.15 -2.18 16 18 C 0.06 0.80 6.84 37.20 0.25 1.06 16 19 O -0.38 -6.54 10.31 -35.23 -0.36 -6.90 16 20 C 0.04 0.63 5.42 37.21 0.20 0.83 16 21 H 0.03 0.56 6.79 -51.93 -0.35 0.21 16 22 H 0.04 0.84 8.14 -51.92 -0.42 0.42 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 25 H 0.10 2.63 5.94 -51.93 -0.31 2.33 16 26 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.32 6.06 6.65 -39.29 -0.26 5.80 16 28 H 0.07 1.52 6.52 -51.93 -0.34 1.18 16 29 H 0.04 0.77 6.03 -51.93 -0.31 0.45 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.02 6.49 -51.93 -0.34 0.68 16 35 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.10 1.96 6.48 -51.93 -0.34 1.62 16 38 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 285.99 15.07 4.31 4.31 Total: -1.00 -27.63 285.99 -7.16 -34.80 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -6.28 Total: 5.46 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: 0.12 Total: -15.20 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.07 Total: -38.94 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.36 Total: -6.90 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.63 -7.16 -34.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163696.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.157 kcal (2) G-P(sol) polarization free energy of solvation -27.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds